HHsearch alignment of GI: 254780138 and MMDB domain: 2ka5_A_

>2ka5_A (A:) Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=97.87  E-value=5.4e-05  Score=53.20  Aligned_cols=86  Identities=13%  Similarity=0.178  Sum_probs=71.8

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      +++.+++++.|+|+..+...+.+++.+.+... ..+.+++|+++++.+|++|...|.++.+   +.+.+..+.+.++...
T Consensus        19 ~~~~~ii~l~G~L~~~~~~~~~~~l~~~~~~~-~~~~iiiDl~~v~~iDssg~~~l~~~~~~~~~~g~~l~l~~~~~~v~   97 (125)
T 2ka5_A           19 VDDVVILMPNKELNIENAHLFKKWVFDEFLNK-GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVE   97 (125)
T ss_dssp             CSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred             ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             99999999750897888999999999999966-99889998469984057899899999999997699399988978999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999886422
Q gi|254780138|r   80 QLFSLISFTH   89 (373)
Q Consensus        80 ~Ll~Ll~~~~   89 (373)
                      ++++......
T Consensus        98 ~~l~~~~~~~  107 (125)
T 2ka5_A           98 RVLSLTNLDR  107 (125)
T ss_dssp             HHHHHTTSTT
T ss_pred             HHHHHCCCCC
T ss_conf             9999859986