Query         gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 373
No_of_seqs    186 out of 1048
Neff          6.2 
Searched_HMMs 23785
Date          Sun May 22 22:47:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780138.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1th8_B Anti-sigma F factor ant  98.0 2.6E-05 1.1E-09   54.4   8.8   86    3-89     10-98  (116)
  2 1sbo_A Putative anti-sigma fac  98.0 2.2E-05 9.4E-10   54.8   8.4   86    2-88     10-98  (110)
  3 2ka5_A Putative anti-sigma fac  97.9 3.5E-05 1.5E-09   53.4   7.0   86    3-89     19-107 (125)
  4 1h4x_A SPOIIAA, anti-sigma F f  97.8 6.3E-05 2.7E-09   51.7   8.0   86    3-89      9-97  (117)
  5 2vy9_A Anti-sigma-factor antag  97.6 0.00025   1E-08   47.5   8.1   84    3-87     10-96  (123)
  6 3oir_A Sulfate transporter sul  97.4 0.00041 1.7E-08   45.9   6.4   83    3-88     21-106 (135)
  7 3mgl_A Sulfate permease family  97.1  0.0015 6.3E-08   42.0   6.7   83    4-89     19-104 (130)
  8 3oiz_A Antisigma-factor antago  97.0 0.00044 1.8E-08   45.8   3.3   81    1-85     11-95  (99)
  9 3llo_A Prestin; STAS domain, c  96.9  0.0022 9.1E-08   40.9   6.4   85    3-87     28-117 (143)
 10 2q3l_A Uncharacterized protein  63.6     5.6 0.00024   16.9   4.7   82    4-85     19-104 (126)
 11 2ook_A Hypothetical protein; s  54.8     7.8 0.00033   15.9   4.0   51    3-53     18-69  (127)
 12 1z96_A DNA-damage, UBA-domain   20.1      28  0.0012   12.0   1.6   18  237-254     4-21  (40)

No 1  
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=98.04  E-value=2.6e-05  Score=54.41  Aligned_cols=86  Identities=16%  Similarity=0.345  Sum_probs=72.5

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      +|+..++++.|+.+..+..++++.+.+.+... ..+.+++|+++++++||+|...|.++.+   +.+.+..+.+.++..+
T Consensus        10 ~~~v~vv~l~G~l~~~~~~~l~~~l~~~~~~~-~~~~liiDl~~v~~idssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~   88 (116)
T 1th8_B           10 KQDVLIVRLSGELDHHTAEELREQVTDVLENR-AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVK   88 (116)
T ss_dssp             ETTEEEEEEEEEESHHHHHHHHHHHHHHHHSS-CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHHHH
T ss_pred             ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             89999999999999899999999999999718-99699999569835167999999999999995899899996898999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999886422
Q gi|254780138|r   80 QLFSLISFTH   89 (373)
Q Consensus        80 ~Ll~Ll~~~~   89 (373)
                      +.++......
T Consensus        89 ~~l~~~gl~~   98 (116)
T 1th8_B           89 RLFDMSGLFK   98 (116)
T ss_dssp             HHHHHHTGGG
T ss_pred             HHHHHCCCCC
T ss_conf             9999839977


No 2  
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=98.03  E-value=2.2e-05  Score=54.80  Aligned_cols=86  Identities=15%  Similarity=0.324  Sum_probs=71.7

Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHH
Q ss_conf             85882799984035635522007999986431167880899701051521299999999997---518764315899126
Q gi|254780138|r    2 SENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHI   78 (373)
Q Consensus         2 s~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~   78 (373)
                      .+++..+++++|+.+..+...+.+.+.+.+... ..+.+++|+++++++||+|...|..+.+   +.+.+....+.++..
T Consensus        10 ~~~~~~ii~l~G~l~~~~a~~l~~~l~~~~~~~-~~~~vvlD~~~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v   88 (110)
T 1sbo_A           10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFISTT-SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESI   88 (110)
T ss_dssp             ECSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC-SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHH
T ss_pred             EECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             999999999999999689899999999998538-9978999946998736279999999999999789989999299899


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999988642
Q gi|254780138|r   79 EQLFSLISFT   88 (373)
Q Consensus        79 ~~Ll~Ll~~~   88 (373)
                      +++++.....
T Consensus        89 ~~~l~~~gl~   98 (110)
T 1sbo_A           89 SRILKLTHLD   98 (110)
T ss_dssp             HHHHHHTTCG
T ss_pred             HHHHHHCCCC
T ss_conf             9999984998


No 3  
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=97.87  E-value=3.5e-05  Score=53.42  Aligned_cols=86  Identities=13%  Similarity=0.178  Sum_probs=70.0

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      .|+..+++++|+++..+.....+.+...+... ..+.+++|+++++++||+|...|.++.+   +.+.+..+.+.++..+
T Consensus        19 ~d~v~vl~~~g~Ld~~~a~~f~~~l~~~~~~~-~~~~vilDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~   97 (125)
T 2ka5_A           19 VDDVVILMPNKELNIENAHLFKKWVFDEFLNK-GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVE   97 (125)
T ss_dssp             CSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred             ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             99999999741886889999999999999966-99889998479972776899999999999997799999957998999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999886422
Q gi|254780138|r   80 QLFSLISFTH   89 (373)
Q Consensus        80 ~Ll~Ll~~~~   89 (373)
                      +.++......
T Consensus        98 ~~l~~~gl~~  107 (125)
T 2ka5_A           98 RVLSLTNLDR  107 (125)
T ss_dssp             HHHHHTTSTT
T ss_pred             HHHHHCCCCC
T ss_conf             9999819986


No 4  
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=97.85  E-value=6.3e-05  Score=51.66  Aligned_cols=86  Identities=17%  Similarity=0.300  Sum_probs=71.3

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCHHHH
Q ss_conf             58827999840356355220079999864311678808997010515212999999999975---187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEK---YHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~---~~~~~~~~~l~~~~~   79 (373)
                      ++...++++.|+.+..+...+++.+.+.+... ..+.+.+|+++++++||+|+..|.++.+.   .+.+..+.+.++..+
T Consensus         9 ~~~~~vi~l~G~l~~~~a~~l~~~l~~~~~~~-~~~~vilDls~v~~idssgl~~L~~~~~~~~~~~~~l~l~~~~~~v~   87 (117)
T 1h4x_A            9 TRETVVIRLFGELDHHAVEQIRAKISTAIFQG-AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTMR   87 (117)
T ss_dssp             ETTEEEEEEEEEECHHHHHHHHHHHHHHHHHT-SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCHHHH
T ss_pred             ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             09899999999998689999999999999539-99689999726876476999999999999986899899996998999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999886422
Q gi|254780138|r   80 QLFSLISFTH   89 (373)
Q Consensus        80 ~Ll~Ll~~~~   89 (373)
                      ++++......
T Consensus        88 ~~l~~~gl~~   97 (117)
T 1h4x_A           88 KVFQFSGLGP   97 (117)
T ss_dssp             HHHHHTTCGG
T ss_pred             HHHHHCCCCE
T ss_conf             9999839984


No 5  
>2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica}
Probab=97.62  E-value=0.00025  Score=47.49  Aligned_cols=84  Identities=10%  Similarity=0.218  Sum_probs=70.1

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      .|+.+++.+.|+.+..+...+.+++...+... ..+.+.+|+++++.+|++|.-.+.++.+   ..+.+..+.|++|..+
T Consensus        10 ~~~~lvv~l~G~Ld~~~~~~l~~~ll~~i~~~-~~~~vilD~s~v~~idssgl~~l~~~~~~~~~~g~~~~l~g~~p~v~   88 (123)
T 2vy9_A           10 VDDYWVVAIEETLHDQSVIQFKEELLHNITGV-AGKGLVIDISALEVVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVA   88 (123)
T ss_dssp             ETTEEEEECCCCSCSHHHHHHHHHHHHHHTTS-CCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHTTCCEEEECCCHHHH
T ss_pred             ECCEEEEEEEEEECHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             89999998568987899999999999999847-99799998569974519999999999999997699899993899999


Q ss_pred             HHHHHHHH
Q ss_conf             99998864
Q gi|254780138|r   80 QLFSLISF   87 (373)
Q Consensus        80 ~Ll~Ll~~   87 (373)
                      +.+.....
T Consensus        89 ~~l~~~g~   96 (123)
T 2vy9_A           89 ITLTEMGL   96 (123)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHCC
T ss_conf             99999599


No 6  
>3oir_A Sulfate transporter sulfate transporter family PR; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; HET: MSE; 1.85A {Wolinella succinogenes}
Probab=97.35  E-value=0.00041  Score=45.91  Aligned_cols=83  Identities=17%  Similarity=0.238  Sum_probs=66.5

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH
Q ss_conf             5882799984035635522007999986431167880899701051521299999999997---5187643158991269
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE   79 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~   79 (373)
                      .+|..++++.|.....+...+.+.+.+..   ...+.+++|++++.++|++|+..|.++.+   +.+.+..+.++++...
T Consensus        21 ~~gv~v~rl~G~L~F~~a~~~~~~l~~~~---~~~~~vIlD~~~v~~iDssg~~~L~~l~~~~~~~g~~l~l~~~~~~v~   97 (135)
T 3oir_A           21 PLGVEIYEINGPFFFGVADRLKGVLDVIE---ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRLY   97 (135)
T ss_dssp             CTTEEEEECCSSBSHHHHHHHTTHHHHCS---SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHHHH
T ss_pred             CCCEEEEEECCEEEHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf             99879999621886151999999999734---799999997507975478899999999999985799999997998999


Q ss_pred             HHHHHHHHH
Q ss_conf             999988642
Q gi|254780138|r   80 QLFSLISFT   88 (373)
Q Consensus        80 ~Ll~Ll~~~   88 (373)
                      +.++.....
T Consensus        98 ~~l~~~g~~  106 (135)
T 3oir_A           98 GALNRFGFI  106 (135)
T ss_dssp             HHHHHTTHH
T ss_pred             HHHHHCCCH
T ss_conf             999986992


No 7  
>3mgl_A Sulfate permease family protein; PSI2, MCSG, structural genomics, protein structure initiative; 2.25A {Vibrio cholerae o1 biovar el tor}
Probab=97.05  E-value=0.0015  Score=41.98  Aligned_cols=83  Identities=12%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHHH
Q ss_conf             882799984035635522007999986431167880899701051521299999999997---51876431589912699
Q gi|254780138|r    4 NGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIEQ   80 (373)
Q Consensus         4 dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~~   80 (373)
                      .|..++++.|.....+.....+.+.+.. .  +.+.+++|++++..+|++|+..|.++.+   +.+.+....+.++..++
T Consensus        19 ~~v~i~~~~G~L~F~~a~~~~~~l~~~~-~--~~~~vIlD~~~v~~iD~sg~~~l~~~~~~~~~~g~~l~l~~~~~~v~~   95 (130)
T 3mgl_A           19 RELAVYALEGPFFFAAAETFERVMGSIQ-E--TPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQ   95 (130)
T ss_dssp             TTEEEEEEESSCCHHHHHHHHHHHHHSS-S--CCSEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred             CCEEEEEECCEEEHHHHHHHHHHHHHHC-C--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             9889999756985465999999999724-7--999999977379876868999999999999977998999828889999


Q ss_pred             HHHHHHHHH
Q ss_conf             999886422
Q gi|254780138|r   81 LFSLISFTH   89 (373)
Q Consensus        81 Ll~Ll~~~~   89 (373)
                      .++......
T Consensus        96 ~l~~~gl~~  104 (130)
T 3mgl_A           96 KLVKAGIVK  104 (130)
T ss_dssp             HHHHTTHHH
T ss_pred             HHHHCCCHH
T ss_conf             999869965


No 8  
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=96.95  E-value=0.00044  Score=45.77  Aligned_cols=81  Identities=15%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             CCCCC-EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCH
Q ss_conf             98588-27999840356355220079999864311678808997010515212999999999975---187643158991
Q gi|254780138|r    1 MSENG-ITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEK---YHGKIKLQGVST   76 (373)
Q Consensus         1 ~s~dG-~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~---~~~~~~~~~l~~   76 (373)
                      +++|| ..++++.|+.--.+....    .+.+...++.+.+++|++++..||++|+..|.++.++   .+.+..+.++++
T Consensus        11 ~~~dg~~~vy~i~G~LfFg~a~~~----~~~~~~~~~~~~vild~~~v~~iD~Sa~~aL~~~~~~~~~~g~~l~l~gl~~   86 (99)
T 3oiz_A           11 LSKDGRERIYRVEGQLFYASVEDF----MAAFDFREALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMNE   86 (99)
T ss_dssp             ECTTSSEEEEEEEEEECGGGHHHH----HHTCCTTSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred             ECCCCCEEEEEEECEEEHHHHHHH----HHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             889899999999478842409999----9998533799999998478972377999999999999995799999982998


Q ss_pred             HHHHHHHHH
Q ss_conf             269999988
Q gi|254780138|r   77 HIEQLFSLI   85 (373)
Q Consensus        77 ~~~~Ll~Ll   85 (373)
                      ..+++++..
T Consensus        87 ~v~~~l~r~   95 (99)
T 3oiz_A           87 ASETMVDRL   95 (99)
T ss_dssp             HHTTCC---
T ss_pred             HHHHHHHHH
T ss_conf             999999982


No 9  
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=96.89  E-value=0.0022  Score=40.88  Aligned_cols=85  Identities=14%  Similarity=0.203  Sum_probs=65.6

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHH
Q ss_conf             5882799984035635522007999986431--167880899701051521299999999997---51876431589912
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINK--SIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTH   77 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~--~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~   77 (373)
                      -.|.+++++.|+..-.+.....+++.+....  .+..+.+++|+++++.+|++|+..|.++.+   +.+.+..+.++++.
T Consensus        28 ~p~v~I~r~~g~L~F~na~~~~~~i~~~~~~~~~~~~k~vVld~~~v~~iD~tg~~~L~~l~~~l~~~gi~l~la~~~~~  107 (143)
T 3llo_A           28 IPGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQ  107 (143)
T ss_dssp             CTTEEEEEECSCHHHHHHHHHHHC-----------CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHH
T ss_pred             CCCEEEEECCCCCEECCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             69999998489857712288888876664202579825999996689858879999999999999977999999809879


Q ss_pred             HHHHHHHHHH
Q ss_conf             6999998864
Q gi|254780138|r   78 IEQLFSLISF   87 (373)
Q Consensus        78 ~~~Ll~Ll~~   87 (373)
                      ..+.++....
T Consensus       108 v~~~l~~~g~  117 (143)
T 3llo_A          108 VVNDLTSNRF  117 (143)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHCCC
T ss_conf             9999998799


No 10 
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=63.64  E-value=5.6  Score=16.90  Aligned_cols=82  Identities=11%  Similarity=0.094  Sum_probs=48.1

Q ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHHH
Q ss_conf             88279998403563552200799998643116788-08997010515212999999999975187---643158991269
Q gi|254780138|r    4 NGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTIGAELIMYFMEKYHG---KIKLQGVSTHIE   79 (373)
Q Consensus         4 dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTAGA~lL~~l~~~~~~---~~~~~~l~~~~~   79 (373)
                      |....++++|..|...+..+.+.+...++.+.+.+ .+.+|..+...||-..+|==.++-.++..   ++..++-+.=.+
T Consensus        19 ~~il~~~~~Gklt~~D~~~~~~~le~~l~~~~~~~v~~li~~~~F~G~~~~A~~edlkf~~~h~~~f~riAvV~d~~W~~   98 (126)
T 2q3l_A           19 DFYLAFKAVGKLTHEDYEQMTPLLESALAGIKTPEIVALIDITELDGLSLHAAWDDLKLGLKHGKEFKRVAIIGQGELQE   98 (126)
T ss_dssp             EEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEEECHHHHHHHHHHHHHHGGGEEEEEEECCSHHHH
T ss_pred             CCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf             85899999867879999999999999997557961999998377899988799998687675231443899990859999


Q ss_pred             HHHHHH
Q ss_conf             999988
Q gi|254780138|r   80 QLFSLI   85 (373)
Q Consensus        80 ~Ll~Ll   85 (373)
                      ...++.
T Consensus        99 ~~~~~~  104 (126)
T 2q3l_A           99 WATRVA  104 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999997


No 11 
>2ook_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina ncimb 400} SCOP: c.13.2.2
Probab=54.83  E-value=7.8  Score=15.89  Aligned_cols=51  Identities=14%  Similarity=0.087  Sum_probs=38.1

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHH
Q ss_conf             588279998403563552200799998643116788-089970105152129
Q gi|254780138|r    3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTI   53 (373)
Q Consensus         3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTA   53 (373)
                      ++....++++|..|...+..+.+.+.+.++.+.+.+ .+.+|..+...||-.
T Consensus        18 ~~~vi~v~~~G~lt~~Dye~~~~~le~~l~~~~~~~v~l~id~~~F~G~~~~   69 (127)
T 2ook_A           18 SVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQPKVSLFLDATELDGWDLR   69 (127)
T ss_dssp             TEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECTT
T ss_pred             CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHH
T ss_conf             9879999998778799999999999999985599529999981778999888


No 12 
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=20.11  E-value=28  Score=12.01  Aligned_cols=18  Identities=28%  Similarity=0.538  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHCCCHHHH
Q ss_conf             750013444427868999
Q gi|254780138|r  237 INEEIDAIRTMGLDFVRI  254 (373)
Q Consensus       237 v~eeidAL~~~Gi~p~~~  254 (373)
                      .|..|.-|-.||.||.+-
T Consensus         4 lnskiaqlvsmgfdplea   21 (40)
T 1z96_A            4 LNSKIAQLVSMGFDPLEA   21 (40)
T ss_dssp             HHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHCCCCHHHH
T ss_conf             647999999817887899


Done!