Query gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Match_columns 373 No_of_seqs 186 out of 1048 Neff 6.2 Searched_HMMs 23785 Date Sun May 22 22:47:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780138.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1th8_B Anti-sigma F factor ant 98.0 2.6E-05 1.1E-09 54.4 8.8 86 3-89 10-98 (116) 2 1sbo_A Putative anti-sigma fac 98.0 2.2E-05 9.4E-10 54.8 8.4 86 2-88 10-98 (110) 3 2ka5_A Putative anti-sigma fac 97.9 3.5E-05 1.5E-09 53.4 7.0 86 3-89 19-107 (125) 4 1h4x_A SPOIIAA, anti-sigma F f 97.8 6.3E-05 2.7E-09 51.7 8.0 86 3-89 9-97 (117) 5 2vy9_A Anti-sigma-factor antag 97.6 0.00025 1E-08 47.5 8.1 84 3-87 10-96 (123) 6 3oir_A Sulfate transporter sul 97.4 0.00041 1.7E-08 45.9 6.4 83 3-88 21-106 (135) 7 3mgl_A Sulfate permease family 97.1 0.0015 6.3E-08 42.0 6.7 83 4-89 19-104 (130) 8 3oiz_A Antisigma-factor antago 97.0 0.00044 1.8E-08 45.8 3.3 81 1-85 11-95 (99) 9 3llo_A Prestin; STAS domain, c 96.9 0.0022 9.1E-08 40.9 6.4 85 3-87 28-117 (143) 10 2q3l_A Uncharacterized protein 63.6 5.6 0.00024 16.9 4.7 82 4-85 19-104 (126) 11 2ook_A Hypothetical protein; s 54.8 7.8 0.00033 15.9 4.0 51 3-53 18-69 (127) 12 1z96_A DNA-damage, UBA-domain 20.1 28 0.0012 12.0 1.6 18 237-254 4-21 (40) No 1 >1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A Probab=98.04 E-value=2.6e-05 Score=54.41 Aligned_cols=86 Identities=16% Similarity=0.345 Sum_probs=72.5 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373) +|+..++++.|+.+..+..++++.+.+.+... ..+.+++|+++++++||+|...|.++.+ +.+.+..+.+.++..+ T Consensus 10 ~~~v~vv~l~G~l~~~~~~~l~~~l~~~~~~~-~~~~liiDl~~v~~idssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~ 88 (116) T 1th8_B 10 KQDVLIVRLSGELDHHTAEELREQVTDVLENR-AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVK 88 (116) T ss_dssp ETTEEEEEEEEEESHHHHHHHHHHHHHHHHSS-CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHHHH T ss_pred ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 89999999999999899999999999999718-99699999569835167999999999999995899899996898999 Q ss_pred HHHHHHHHHH Q ss_conf 9999886422 Q gi|254780138|r 80 QLFSLISFTH 89 (373) Q Consensus 80 ~Ll~Ll~~~~ 89 (373) +.++...... T Consensus 89 ~~l~~~gl~~ 98 (116) T 1th8_B 89 RLFDMSGLFK 98 (116) T ss_dssp HHHHHHTGGG T ss_pred HHHHHCCCCC T ss_conf 9999839977 No 2 >1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A Probab=98.03 E-value=2.2e-05 Score=54.80 Aligned_cols=86 Identities=15% Similarity=0.324 Sum_probs=71.7 Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHH Q ss_conf 85882799984035635522007999986431167880899701051521299999999997---518764315899126 Q gi|254780138|r 2 SENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHI 78 (373) Q Consensus 2 s~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~ 78 (373) .+++..+++++|+.+..+...+.+.+.+.+... ..+.+++|+++++++||+|...|..+.+ +.+.+....+.++.. T Consensus 10 ~~~~~~ii~l~G~l~~~~a~~l~~~l~~~~~~~-~~~~vvlD~~~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 88 (110) T 1sbo_A 10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFISTT-SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESI 88 (110) T ss_dssp ECSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC-SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHH T ss_pred EECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH T ss_conf 999999999999999689899999999998538-9978999946998736279999999999999789989999299899 Q ss_pred HHHHHHHHHH Q ss_conf 9999988642 Q gi|254780138|r 79 EQLFSLISFT 88 (373) Q Consensus 79 ~~Ll~Ll~~~ 88 (373) +++++..... T Consensus 89 ~~~l~~~gl~ 98 (110) T 1sbo_A 89 SRILKLTHLD 98 (110) T ss_dssp HHHHHHTTCG T ss_pred HHHHHHCCCC T ss_conf 9999984998 No 3 >2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A* Probab=97.87 E-value=3.5e-05 Score=53.42 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=70.0 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373) .|+..+++++|+++..+.....+.+...+... ..+.+++|+++++++||+|...|.++.+ +.+.+..+.+.++..+ T Consensus 19 ~d~v~vl~~~g~Ld~~~a~~f~~~l~~~~~~~-~~~~vilDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~ 97 (125) T 2ka5_A 19 VDDVVILMPNKELNIENAHLFKKWVFDEFLNK-GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEKVE 97 (125) T ss_dssp CSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH T ss_pred ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH T ss_conf 99999999741886889999999999999966-99889998479972776899999999999997799999957998999 Q ss_pred HHHHHHHHHH Q ss_conf 9999886422 Q gi|254780138|r 80 QLFSLISFTH 89 (373) Q Consensus 80 ~Ll~Ll~~~~ 89 (373) +.++...... T Consensus 98 ~~l~~~gl~~ 107 (125) T 2ka5_A 98 RVLSLTNLDR 107 (125) T ss_dssp HHHHHTTSTT T ss_pred HHHHHCCCCC T ss_conf 9999819986 No 4 >1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A Probab=97.85 E-value=6.3e-05 Score=51.66 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=71.3 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCHHHH Q ss_conf 58827999840356355220079999864311678808997010515212999999999975---187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEK---YHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~---~~~~~~~~~l~~~~~ 79 (373) ++...++++.|+.+..+...+++.+.+.+... ..+.+.+|+++++++||+|+..|.++.+. .+.+..+.+.++..+ T Consensus 9 ~~~~~vi~l~G~l~~~~a~~l~~~l~~~~~~~-~~~~vilDls~v~~idssgl~~L~~~~~~~~~~~~~l~l~~~~~~v~ 87 (117) T 1h4x_A 9 TRETVVIRLFGELDHHAVEQIRAKISTAIFQG-AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTMR 87 (117) T ss_dssp ETTEEEEEEEEEECHHHHHHHHHHHHHHHHHT-SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCHHHH T ss_pred ECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 09899999999998689999999999999539-99689999726876476999999999999986899899996998999 Q ss_pred HHHHHHHHHH Q ss_conf 9999886422 Q gi|254780138|r 80 QLFSLISFTH 89 (373) Q Consensus 80 ~Ll~Ll~~~~ 89 (373) ++++...... T Consensus 88 ~~l~~~gl~~ 97 (117) T 1h4x_A 88 KVFQFSGLGP 97 (117) T ss_dssp HHHHHTTCGG T ss_pred HHHHHCCCCE T ss_conf 9999839984 No 5 >2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica} Probab=97.62 E-value=0.00025 Score=47.49 Aligned_cols=84 Identities=10% Similarity=0.218 Sum_probs=70.1 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373) .|+.+++.+.|+.+..+...+.+++...+... ..+.+.+|+++++.+|++|.-.+.++.+ ..+.+..+.|++|..+ T Consensus 10 ~~~~lvv~l~G~Ld~~~~~~l~~~ll~~i~~~-~~~~vilD~s~v~~idssgl~~l~~~~~~~~~~g~~~~l~g~~p~v~ 88 (123) T 2vy9_A 10 VDDYWVVAIEETLHDQSVIQFKEELLHNITGV-AGKGLVIDISALEVVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVA 88 (123) T ss_dssp ETTEEEEECCCCSCSHHHHHHHHHHHHHHTTS-CCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHTTCCEEEECCCHHHH T ss_pred ECCEEEEEEEEEECHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH T ss_conf 89999998568987899999999999999847-99799998569974519999999999999997699899993899999 Q ss_pred HHHHHHHH Q ss_conf 99998864 Q gi|254780138|r 80 QLFSLISF 87 (373) Q Consensus 80 ~Ll~Ll~~ 87 (373) +.+..... T Consensus 89 ~~l~~~g~ 96 (123) T 2vy9_A 89 ITLTEMGL 96 (123) T ss_dssp HHHHHTTC T ss_pred HHHHHHCC T ss_conf 99999599 No 6 >3oir_A Sulfate transporter sulfate transporter family PR; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; HET: MSE; 1.85A {Wolinella succinogenes} Probab=97.35 E-value=0.00041 Score=45.91 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=66.5 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHH Q ss_conf 5882799984035635522007999986431167880899701051521299999999997---5187643158991269 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIE 79 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~ 79 (373) .+|..++++.|.....+...+.+.+.+.. ...+.+++|++++.++|++|+..|.++.+ +.+.+..+.++++... T Consensus 21 ~~gv~v~rl~G~L~F~~a~~~~~~l~~~~---~~~~~vIlD~~~v~~iDssg~~~L~~l~~~~~~~g~~l~l~~~~~~v~ 97 (135) T 3oir_A 21 PLGVEIYEINGPFFFGVADRLKGVLDVIE---ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRLY 97 (135) T ss_dssp CTTEEEEECCSSBSHHHHHHHTTHHHHCS---SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHHHH T ss_pred CCCEEEEEECCEEEHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH T ss_conf 99879999621886151999999999734---799999997507975478899999999999985799999997998999 Q ss_pred HHHHHHHHH Q ss_conf 999988642 Q gi|254780138|r 80 QLFSLISFT 88 (373) Q Consensus 80 ~Ll~Ll~~~ 88 (373) +.++..... T Consensus 98 ~~l~~~g~~ 106 (135) T 3oir_A 98 GALNRFGFI 106 (135) T ss_dssp HHHHHTTHH T ss_pred HHHHHCCCH T ss_conf 999986992 No 7 >3mgl_A Sulfate permease family protein; PSI2, MCSG, structural genomics, protein structure initiative; 2.25A {Vibrio cholerae o1 biovar el tor} Probab=97.05 E-value=0.0015 Score=41.98 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=64.9 Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHHHHH Q ss_conf 882799984035635522007999986431167880899701051521299999999997---51876431589912699 Q gi|254780138|r 4 NGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTHIEQ 80 (373) Q Consensus 4 dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~~~~ 80 (373) .|..++++.|.....+.....+.+.+.. . +.+.+++|++++..+|++|+..|.++.+ +.+.+....+.++..++ T Consensus 19 ~~v~i~~~~G~L~F~~a~~~~~~l~~~~-~--~~~~vIlD~~~v~~iD~sg~~~l~~~~~~~~~~g~~l~l~~~~~~v~~ 95 (130) T 3mgl_A 19 RELAVYALEGPFFFAAAETFERVMGSIQ-E--TPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQ 95 (130) T ss_dssp TTEEEEEEESSCCHHHHHHHHHHHHHSS-S--CCSEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH T ss_pred CCEEEEEECCEEEHHHHHHHHHHHHHHC-C--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH T ss_conf 9889999756985465999999999724-7--999999977379876868999999999999977998999828889999 Q ss_pred HHHHHHHHH Q ss_conf 999886422 Q gi|254780138|r 81 LFSLISFTH 89 (373) Q Consensus 81 Ll~Ll~~~~ 89 (373) .++...... T Consensus 96 ~l~~~gl~~ 104 (130) T 3mgl_A 96 KLVKAGIVK 104 (130) T ss_dssp HHHHTTHHH T ss_pred HHHHCCCHH T ss_conf 999869965 No 8 >3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A Probab=96.95 E-value=0.00044 Score=45.77 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=61.2 Q ss_pred CCCCC-EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCH Q ss_conf 98588-27999840356355220079999864311678808997010515212999999999975---187643158991 Q gi|254780138|r 1 MSENG-ITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEK---YHGKIKLQGVST 76 (373) Q Consensus 1 ~s~dG-~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~---~~~~~~~~~l~~ 76 (373) +++|| ..++++.|+.--.+.... .+.+...++.+.+++|++++..||++|+..|.++.++ .+.+..+.++++ T Consensus 11 ~~~dg~~~vy~i~G~LfFg~a~~~----~~~~~~~~~~~~vild~~~v~~iD~Sa~~aL~~~~~~~~~~g~~l~l~gl~~ 86 (99) T 3oiz_A 11 LSKDGRERIYRVEGQLFYASVEDF----MAAFDFREALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMNE 86 (99) T ss_dssp ECTTSSEEEEEEEEEECGGGHHHH----HHTCCTTSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESHHH T ss_pred ECCCCCEEEEEEECEEEHHHHHHH----HHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH T ss_conf 889899999999478842409999----9998533799999998478972377999999999999995799999982998 Q ss_pred HHHHHHHHH Q ss_conf 269999988 Q gi|254780138|r 77 HIEQLFSLI 85 (373) Q Consensus 77 ~~~~Ll~Ll 85 (373) ..+++++.. T Consensus 87 ~v~~~l~r~ 95 (99) T 3oiz_A 87 ASETMVDRL 95 (99) T ss_dssp HHTTCC--- T ss_pred HHHHHHHHH T ss_conf 999999982 No 9 >3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus} Probab=96.89 E-value=0.0022 Score=40.88 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=65.6 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHH--CCCCCEEEEEECCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCHH Q ss_conf 5882799984035635522007999986431--167880899701051521299999999997---51876431589912 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINK--SIQSDSAIVDLSAITEIDTIGAELIMYFME---KYHGKIKLQGVSTH 77 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~--~~~~~~i~iDls~i~~lDTAGA~lL~~l~~---~~~~~~~~~~l~~~ 77 (373) -.|.+++++.|+..-.+.....+++.+.... .+..+.+++|+++++.+|++|+..|.++.+ +.+.+..+.++++. T Consensus 28 ~p~v~I~r~~g~L~F~na~~~~~~i~~~~~~~~~~~~k~vVld~~~v~~iD~tg~~~L~~l~~~l~~~gi~l~la~~~~~ 107 (143) T 3llo_A 28 IPGIKIFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQ 107 (143) T ss_dssp CTTEEEEEECSCHHHHHHHHHHHC-----------CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHH T ss_pred CCCEEEEECCCCCEECCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 69999998489857712288888876664202579825999996689858879999999999999977999999809879 Q ss_pred HHHHHHHHHH Q ss_conf 6999998864 Q gi|254780138|r 78 IEQLFSLISF 87 (373) Q Consensus 78 ~~~Ll~Ll~~ 87 (373) ..+.++.... T Consensus 108 v~~~l~~~g~ 117 (143) T 3llo_A 108 VVNDLTSNRF 117 (143) T ss_dssp HHHHHHHTTT T ss_pred HHHHHHHCCC T ss_conf 9999998799 No 10 >2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2 Probab=63.64 E-value=5.6 Score=16.90 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=48.1 Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHHH Q ss_conf 88279998403563552200799998643116788-08997010515212999999999975187---643158991269 Q gi|254780138|r 4 NGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTIGAELIMYFMEKYHG---KIKLQGVSTHIE 79 (373) Q Consensus 4 dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTAGA~lL~~l~~~~~~---~~~~~~l~~~~~ 79 (373) |....++++|..|...+..+.+.+...++.+.+.+ .+.+|..+...||-..+|==.++-.++.. ++..++-+.=.+ T Consensus 19 ~~il~~~~~Gklt~~D~~~~~~~le~~l~~~~~~~v~~li~~~~F~G~~~~A~~edlkf~~~h~~~f~riAvV~d~~W~~ 98 (126) T 2q3l_A 19 DFYLAFKAVGKLTHEDYEQMTPLLESALAGIKTPEIVALIDITELDGLSLHAAWDDLKLGLKHGKEFKRVAIIGQGELQE 98 (126) T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEEECHHHHHHHHHHHHHHGGGEEEEEEECCSHHHH T ss_pred CCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH T ss_conf 85899999867879999999999999997557961999998377899988799998687675231443899990859999 Q ss_pred HHHHHH Q ss_conf 999988 Q gi|254780138|r 80 QLFSLI 85 (373) Q Consensus 80 ~Ll~Ll 85 (373) ...++. T Consensus 99 ~~~~~~ 104 (126) T 2q3l_A 99 WATRVA 104 (126) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999997 No 11 >2ook_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina ncimb 400} SCOP: c.13.2.2 Probab=54.83 E-value=7.8 Score=15.89 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=38.1 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHH Q ss_conf 588279998403563552200799998643116788-089970105152129 Q gi|254780138|r 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSD-SAIVDLSAITEIDTI 53 (373) Q Consensus 3 ~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~-~i~iDls~i~~lDTA 53 (373) ++....++++|..|...+..+.+.+.+.++.+.+.+ .+.+|..+...||-. T Consensus 18 ~~~vi~v~~~G~lt~~Dye~~~~~le~~l~~~~~~~v~l~id~~~F~G~~~~ 69 (127) T 2ook_A 18 SVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQPKVSLFLDATELDGWDLR 69 (127) T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECTT T ss_pred CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHH T ss_conf 9879999998778799999999999999985599529999981778999888 No 12 >1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Probab=20.11 E-value=28 Score=12.01 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHCCCHHHH Q ss_conf 750013444427868999 Q gi|254780138|r 237 INEEIDAIRTMGLDFVRI 254 (373) Q Consensus 237 v~eeidAL~~~Gi~p~~~ 254 (373) .|..|.-|-.||.||.+- T Consensus 4 lnskiaqlvsmgfdplea 21 (40) T 1z96_A 4 LNSKIAQLVSMGFDPLEA 21 (40) T ss_dssp HHHHHHHHHHTTCCHHHH T ss_pred HHHHHHHHHHCCCCHHHH T ss_conf 647999999817887899 Done!