HHSEARCH alignment of GI: 254780138 and SCOP domain: d1vc1a_

Alignment
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=98.22  E-value=4.2e-06  Score=58.24  Aligned_cols=86  Identities=15%  Similarity=0.334  Sum_probs=73.0

Q ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCHHH
Q ss_conf             858827999840356355220079999864311678808997010515212999999999975---18764315899126
Q gi|254780138|r    2 SENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEK---YHGKIKLQGVSTHI   78 (373)
Q Consensus         2 s~dG~~vL~LsGdWTl~~l~~l~~~l~~~L~~~~~~~~i~iDls~i~~lDTAGA~lL~~l~~~---~~~~~~~~~l~~~~   78 (373)
                      .+++..++++.|+++..+...+++.+.+.+... ..+.+++|+++++.+||+|+..|.++.+.   .+.+..+.+.++..
T Consensus        10 ~~~~~~vv~l~G~l~~~~~~~~~~~l~~~~~~~-~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~~~~~l~l~~~~~~v   88 (110)
T d1vc1a_          10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFISTT-SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKESI   88 (110)
T ss_dssp             EETTEEEEEEESCBSTTTHHHHHHHHHHHHHHC-CCSEEEEEEEECCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHHH
T ss_pred             EECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf             999999999998999699999999999887458-9879999989997658799999999999999689979999499999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999988642
Q gi|254780138|r   79 EQLFSLISFT   88 (373)
Q Consensus        79 ~~Ll~Ll~~~   88 (373)
                      +++++.....
T Consensus        89 ~~~l~~~gl~   98 (110)
T d1vc1a_          89 SRILKLTHLD   98 (110)
T ss_dssp             HHHHHHHTGG
T ss_pred             HHHHHHCCCC
T ss_conf             9999985998


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]