RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
(373 letters)
>gnl|CDD|129166 TIGR00056, TIGR00056, conserved hypothetical integral membrane
protein. This model describes a subfamily of the DUF140
family, a set of proteins found so far in Bacteria and
chloroplast. Members have multiple predicted
transmembrane helical regions. One member of this family
has been associated with the toluene tolerance phenotype
of Pseudomonas putida. Many bacterial species have one
or two members. The Mycobacteria have large paralogous
families included in the DUF140 family but excluded from
this subfamily on based on extreme divergence at the
amino end and on phylogenetic and UPGMA trees on the
more conserved regions.
Length = 259
Score = 197 bits (504), Expect = 3e-51
Identities = 83/214 (38%), Positives = 129/214 (60%)
Query: 156 LIRQMYYVGVSGVPVVILISFVTGAVIAQQGAFQLSQFGAEIFSIDLMSILQLREIGVLL 215
L++Q+ VG +P+++L SF G VIA QGA QL FGAE L+++ LRE+G +L
Sbjct: 44 LLKQLNEVGPESLPIILLTSFFIGMVIALQGALQLIAFGAETSIGGLVALSLLRELGPVL 103
Query: 216 TAVMIAGRSGSAIVAEIGSMKINEEIDAIRTMGLDFVRILISPRIWALIISLPLLTILAN 275
TA+++AGR GSA AEIG+M+I E++DA+ M + V L+ PR+ A +I LPLLT+L++
Sbjct: 104 TALVVAGRVGSAFTAEIGTMRITEQLDALEMMATNPVEFLVLPRVLACVIMLPLLTVLSD 163
Query: 276 FSAIIGASIVIWKYYDIPFAVFFSRFHSTATLANIFTGLIKAPFMACAIGIVAMKEGFAV 335
+ I+G + + I F+S+ + +IF GL+KAPF AI I+ GF
Sbjct: 164 VAGILGGAFIASSLLGIGSGSFWSKMQNAVGWWDIFAGLVKAPFFGVAIAIIGCYYGFTT 223
Query: 336 GVHSNSLGKKVTTCVVQSISIVIIIDSLFAIFYF 369
+ +G+ T VV S+ ++I+D + + F
Sbjct: 224 KGGTEGVGRSTTRSVVTSLLAILILDFILSAIMF 257
>gnl|CDD|178648 PLN03100, PLN03100, Permease subunit of ER-derived-lipid
transporter; Provisional.
Length = 292
Score = 86.4 bits (214), Expect = 1e-17
Identities = 56/215 (26%), Positives = 111/215 (51%), Gaps = 2/215 (0%)
Query: 156 LIRQMYYVGVSGVPVVILISFVTGAVIAQQGAFQLSQFGAEIFSIDLMSILQLREIGVLL 215
++Q+ VG + V +L S G V Q + ++ G ++++ RE+ ++
Sbjct: 77 TLQQLERVGPKSLGVSLLTSSFVGMVFTIQFVREFTKLGLTRSIGGVLALAFSRELSPVV 136
Query: 216 TAVMIAGRSGSAIVAEIGSMKINEEIDAIRTMGLDFVRILISPRIWALIISLPLLTILAN 275
TA+++AGR GSA AE+G+M+++E+ D +R +G D V L++PR+ A ++LP+LT++
Sbjct: 137 TAIVLAGRVGSAFAAELGTMQVSEQTDTLRVLGTDPVDYLVTPRVIACCLALPILTLMC- 195
Query: 276 FSAIIGASIVIWK-YYDIPFAVFFSRFHSTATLANIFTGLIKAPFMACAIGIVAMKEGFA 334
F+ + AS ++ Y + + +I + +IK+ I +++ G
Sbjct: 196 FTVGMAASALLADSVYGVSANIILDSAARALRPWDIVSAMIKSQVFGAIISVISCAWGVT 255
Query: 335 VGVHSNSLGKKVTTCVVQSISIVIIIDSLFAIFYF 369
+ +G+ T+ VV S+ + I D + F+F
Sbjct: 256 TTGGAKGVGESTTSAVVISLVGIFIADFFLSSFFF 290
>gnl|CDD|139070 PRK12563, PRK12563, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 312
Score = 29.8 bits (67), Expect = 1.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 79 EQLFSLISFTHRKKIKNQKPQRSFFYNSFK 108
E++FS S HR K Q+P+ YN+
Sbjct: 156 ERIFSFRSAFHRWDPKAQRPELWSLYNARL 185
>gnl|CDD|182608 PRK10639, PRK10639, formate dehydrogenase-O subunit gamma;
Provisional.
Length = 211
Score = 27.8 bits (62), Expect = 4.5
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 21/82 (25%)
Query: 261 WALIISLPLLTILANFSAIIGASIVIWKYYDIPFAVFFS----RF----HSTATLANIFT 312
WA II L LL + + ++IW+ Y FA FS RF HS A +A I
Sbjct: 116 WAAIIFLVLLLV---------SGVIIWRPY---FAPAFSIPVIRFALMLHSFAAVALIVV 163
Query: 313 GLIKAPFMACAIG-IVAMKEGF 333
++ G I AM EG+
Sbjct: 164 IMVHIYAALWVKGTITAMVEGW 185
>gnl|CDD|130743 TIGR01682, moaD, molybdopterin converting factor, subunit 1,
non-archaeal. The C-terminal Gly-Gly of this model is
critical to function.
Length = 80
Score = 27.3 bits (61), Expect = 7.0
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 16 KSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIG 54
+ PE++ V++A+N+ +D A+ + E D +
Sbjct: 39 EGPELAASRGQVMVAVNEEYVTDDAL-----LNEGDEVA 72
>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 27.1 bits (60), Expect = 7.9
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 67 GKIKLQGVSTHIE--QLFSLISFTHRKKIKNQKPQRSFFYNSFKNLHYHIGKKIVKFIND 124
K L + +E + +++ + +K K ++ FYN KN KKI K N+
Sbjct: 165 NKNDLDNLIIVLENPEKYNVRKTLYDEKFNEYKNKKEAFYNCLKNKKEDYDKKIKKINNE 224
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase.
Length = 423
Score = 27.0 bits (60), Expect = 8.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 219 MIAGRSGSAI-VAEIGSMKINEEIDAIRTMGLDFVRILISPRIWALIISLPL 269
+++ R G +I +E G ++I E D ++T+ L L S LI +LPL
Sbjct: 121 IVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEAPLTSEICAPLIATLPL 172
>gnl|CDD|182368 PRK10306, PRK10306, zinc/cadmium-binding protein; Provisional.
Length = 216
Score = 27.0 bits (60), Expect = 8.8
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 104 YNSFKNLHYHIGKKIVKFI---NDSCSQA 129
Y+ +K L Y GKK V+++ D+ S+A
Sbjct: 130 YDGYKILTYASGKKGVRYLFECKDAESKA 158
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.327 0.140 0.401
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,078,677
Number of extensions: 404701
Number of successful extensions: 1161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 46
Length of query: 373
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 278
Effective length of database: 3,941,713
Effective search space: 1095796214
Effective search space used: 1095796214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)