RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62] (373 letters) >2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica} (A:) Length = 123 Score = 36.3 bits (84), Expect = 0.006 Identities = 9/91 (9%), Positives = 28/91 (30%), Gaps = 4/91 (4%) Query: 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62 + V + + ++++ I ++D+SA+ +D+ +++ Sbjct: 10 VDDYWVVAIEETLHDQSVIQFKEELLHNITGV-AGKGLVIDISALEVVDSFVTRVLIEIS 68 Query: 63 EKYH---GKIKLQGVSTHIEQLFSLISFTHR 90 L G+ + + R Sbjct: 69 RLAELLGLPFVLTGIKPAVAITLTEXGLDLR 99 >1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} (A:) Length = 110 Score = 35.2 bits (81), Expect = 0.014 Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 4/94 (4%) Query: 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62 ++ + R G+ + SE+ + + I+ + ++DLS+++ +D+ G ++ + Sbjct: 11 QDDKAIVRVQGDIDAYNSSELKEQLRNFISTT-SKKKIVLDLSSVSYMDSAGLGTLVVIL 69 Query: 63 EKYH---GKIKLQGVSTHIEQLFSLISFTHRKKI 93 + + L + I ++ L KI Sbjct: 70 KDAKINGKEFILSSLKESISRILKLTHLDKIFKI 103 >2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A* (A:) Length = 125 Score = 34.9 bits (80), Expect = 0.017 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 4/94 (4%) Query: 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62 + + + V + + LS + ID+ +I+ + Sbjct: 19 VDDVVILMPNKELNIENAHLFKKWVFDEFLNK-GYNKIFLVLSDVESIDSFSLGVIVNIL 77 Query: 63 EKYH---GKIKLQGVSTHIEQLFSLISFTHRKKI 93 + G L + +E++ SL + KI Sbjct: 78 KSISSSGGFFALVSPNEKVERVLSLTNLDRIVKI 111 >1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} (B:) Length = 116 Score = 34.5 bits (79), Expect = 0.023 Identities = 14/94 (14%), Positives = 40/94 (42%), Gaps = 4/94 (4%) Query: 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62 + + + R +G E+ + V + +++L +T +D+ G +I+ Sbjct: 10 KQDVLIVRLSGELDHHTAEELREQVTDVLENR-AIRHIVLNLGQLTFMDSSGLGVILGRY 68 Query: 63 EKYH---GKIKLQGVSTHIEQLFSLISFTHRKKI 93 ++ G++ + VS +++LF + ++ Sbjct: 69 KQIKNVGGQMVVCAVSPAVKRLFDMSGLFKIIRV 102 >1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} (A:) Length = 117 Score = 34.0 bits (78), Expect = 0.035 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 4/90 (4%) Query: 3 ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62 V R G + +I + AI + + I + ++ +D G L++ M Sbjct: 9 TRETVVIRLFGELDHHAVEQIRAKISTAIFQG-AVTTIIWNFERLSFMDXSGVGLVLGRM 67 Query: 63 EKYH---GKIKLQGVSTHIEQLFSLISFTH 89 + G+ L S + ++F Sbjct: 68 RELEAVAGRTILLNPSPTMRKVFQFSGLGP 97 >3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* (A:1-419) Length = 419 Score = 33.5 bits (75), Expect = 0.043 Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 6/172 (3%) Query: 170 VVILISFVTGAVIAQQGAFQLSQFGAEIFSIDLMSILQLRE-IGVLLTAVMIAGRSGSAI 228 +IL + + + + S I + +++ + L E +G +L + Sbjct: 6 PLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGES 65 Query: 229 VAEIGSMKINEEIDAIRTMGLDFVRILISPRIWALIISLPLLTILANFSAIIGASIVIWK 288 + + +E ++ + + L + I + Sbjct: 66 SPQALTKMNDEVASLVKKYQFGGIILFAENVKTT-----KQTVQLTDDYQKASPKIPLML 120 Query: 289 YYDIPFAVFFSRFHSTATLANIFTGLIKAPFMACAIGIVAMKEGFAVGVHSN 340 D + T N+ G ++ A G + KE A+G++++ Sbjct: 121 SIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTD 172 >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} (A:142-749) Length = 608 Score = 30.6 bits (67), Expect = 0.39 Identities = 18/137 (13%), Positives = 39/137 (28%), Gaps = 1/137 (0%) Query: 205 ILQLREIGVLLTAVMIAGRSGSAIVA-EIGSMKINEEIDAIRTMGLDFVRILISPRIWAL 263 + L E G+L A +AG SGS + S E + +P + Sbjct: 68 MKALYESGILDCATYVAGLSGSTWYMSTLYSHPDFPEKGPEEINEELMKNVSHNPLLLLT 127 Query: 264 IISLPLLTILANFSAIIGASIVIWKYYDIPFAVFFSRFHSTATLANIFTGLIKAPFMACA 323 + G + + + TL+++ + A Sbjct: 128 PQKVKRYVESLWKKKSSGQPVTFTDIFGMLIGETLIHNRMNTTLSSLKEKVNTAQCPLPL 187 Query: 324 IGIVAMKEGFAVGVHSN 340 + +K + + ++ Sbjct: 188 FTCLHVKPDVSELMFAD 204 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 29.9 bits (67), Expect = 0.52 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 20/93 (21%) Query: 192 QFGAEIFSIDLM---SILQLREIGVLLTAV----MIAGRSGSAIVAEIGSMKINEEIDAI 244 Q I + L+ + + + R EI + ++ A Sbjct: 32 QLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER-----TREIHNEAESQLRAAQ 86 Query: 245 RTMGLDFVRILISPRIWALIISLPLLTILANFS 277 + G DF + PRI A PL LA +S Sbjct: 87 QQWGNDFYK--RDPRI-A-----PLRGALATYS 111 >3bcy_A Protein YER067W; mixed alpha-helix/beta-sheet fold, UBL conjugation, unknown function; 1.70A {Saccharomyces cerevisiae} (A:) Length = 155 Score = 27.9 bits (62), Expect = 2.1 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%) Query: 92 KIKNQKPQRSFFYNSFK-NLHYHIGKKIVKFINDSCS 127 KI + S F +LH HI K ++K I + Sbjct: 62 KISDAANSHS---KKFVRHLHQHIEKHLLKDIKQAVR 95 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 27.4 bits (61), Expect = 2.7 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 8/28 (28%) Query: 195 AEIFSI-DLMSILQLREIGVLLT---AV 218 A++ SI L+ ++ R G +T AV Sbjct: 3 ADVMSIESLVEVVFYR--G--MTMQVAV 26 >1b1y_A Protein (beta-amylase); hydrolase(O-glycosyl); HET: GLC; 2.50A {Hordeum vulgare} (A:1-86,A:136-500) Length = 451 Score = 26.7 bits (59), Expect = 5.2 Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 3/29 (10%) Query: 237 INEEIDAIRTMGLDFVRILISPRIWALII 265 + ++ + G+D V + + W L+ Sbjct: 29 LRAQLRKLVEAGVDGVMVDVW---WGLVE 54 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.327 0.140 0.401 Gapped Lambda K H 0.267 0.0581 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,718,411 Number of extensions: 119215 Number of successful extensions: 431 Number of sequences better than 10.0: 1 Number of HSP's gapped: 431 Number of HSP's successfully gapped: 22 Length of query: 373 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 283 Effective length of database: 1,913,599 Effective search space: 541548517 Effective search space used: 541548517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 55 (25.3 bits)