RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
         (373 letters)



>2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS,
          stressosome, STAS domain, bacillus subtilis; 2.3A
          {Moorella thermoacetica} (A:)
          Length = 123

 Score = 36.3 bits (84), Expect = 0.006
 Identities = 9/91 (9%), Positives = 28/91 (30%), Gaps = 4/91 (4%)

Query: 3  ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62
           +   V           + +  ++++  I         ++D+SA+  +D+    +++   
Sbjct: 10 VDDYWVVAIEETLHDQSVIQFKEELLHNITGV-AGKGLVIDISALEVVDSFVTRVLIEIS 68

Query: 63 EKYH---GKIKLQGVSTHIEQLFSLISFTHR 90
                     L G+   +    +      R
Sbjct: 69 RLAELLGLPFVLTGIKPAVAITLTEXGLDLR 99


>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich,
           JCSG, structural genomics, joint center for structural
           genomics, PSI; NMR {Thermotoga maritima} (A:)
          Length = 110

 Score = 35.2 bits (81), Expect = 0.014
 Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 3   ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62
           ++   + R  G+  +   SE+ + +   I+ +      ++DLS+++ +D+ G   ++  +
Sbjct: 11  QDDKAIVRVQGDIDAYNSSELKEQLRNFISTT-SKKKIVLDLSSVSYMDSAGLGTLVVIL 69

Query: 63  EKYH---GKIKLQGVSTHIEQLFSLISFTHRKKI 93
           +       +  L  +   I ++  L       KI
Sbjct: 70  KDAKINGKEFILSSLKESISRILKLTHLDKIFKI 103


>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga
           marithima, phosphoprotein, structural genomics, PSI-2,
           protein structure initiative; NMR {Thermotoga maritima}
           PDB: 3f43_A* (A:)
          Length = 125

 Score = 34.9 bits (80), Expect = 0.017
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 4/94 (4%)

Query: 3   ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62
            + + +                  V          +   + LS +  ID+    +I+  +
Sbjct: 19  VDDVVILMPNKELNIENAHLFKKWVFDEFLNK-GYNKIFLVLSDVESIDSFSLGVIVNIL 77

Query: 63  EKYH---GKIKLQGVSTHIEQLFSLISFTHRKKI 93
           +      G   L   +  +E++ SL +     KI
Sbjct: 78  KSISSSGGFFALVSPNEKVERVLSLTNLDRIVKI 111


>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA,
           anti-ANTI-sigma, sporulation, serine kinase,
           transcription; HET: ADP; 2.40A {Geobacillus
           stearothermophilus} (B:)
          Length = 116

 Score = 34.5 bits (79), Expect = 0.023
 Identities = 14/94 (14%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 3   ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62
           +  + + R +G        E+ + V   +         +++L  +T +D+ G  +I+   
Sbjct: 10  KQDVLIVRLSGELDHHTAEELREQVTDVLENR-AIRHIVLNLGQLTFMDSSGLGVILGRY 68

Query: 63  EKYH---GKIKLQGVSTHIEQLFSLISFTHRKKI 93
           ++     G++ +  VS  +++LF +       ++
Sbjct: 69  KQIKNVGGQMVVCAVSPAVKRLFDMSGLFKIIRV 102


>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell
          differentiation, crystallography, phosphorylation,
          sigma factor, sporulation; HET: SEP; 1.16A {Bacillus
          sphaericus} (A:)
          Length = 117

 Score = 34.0 bits (78), Expect = 0.035
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 3  ENGITVFRFAGNWKSPEISEIADDVVMAINKSIQSDSAIVDLSAITEIDTIGAELIMYFM 62
               V R  G      + +I   +  AI +     + I +   ++ +D  G  L++  M
Sbjct: 9  TRETVVIRLFGELDHHAVEQIRAKISTAIFQG-AVTTIIWNFERLSFMDXSGVGLVLGRM 67

Query: 63 EKYH---GKIKLQGVSTHIEQLFSLISFTH 89
           +     G+  L   S  + ++F       
Sbjct: 68 RELEAVAGRTILLNPSPTMRKVFQFSGLGP 97


>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
           barrel, glycosidase, hydrolase, membrane, palmitate;
           HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A*
           (A:1-419)
          Length = 419

 Score = 33.5 bits (75), Expect = 0.043
 Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 6/172 (3%)

Query: 170 VVILISFVTGAVIAQQGAFQLSQFGAEIFSIDLMSILQLRE-IGVLLTAVMIAGRSGSAI 228
            +IL + +  +        + S     I +  +++ + L E +G +L       +     
Sbjct: 6   PLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGES 65

Query: 229 VAEIGSMKINEEIDAIRTMGLDFVRILISPRIWALIISLPLLTILANFSAIIGASIVIWK 288
             +  +   +E    ++      + +                  L +        I +  
Sbjct: 66  SPQALTKMNDEVASLVKKYQFGGIILFAENVKTT-----KQTVQLTDDYQKASPKIPLML 120

Query: 289 YYDIPFAVFFSRFHSTATLANIFTGLIKAPFMACAIGIVAMKEGFAVGVHSN 340
             D    +       T    N+  G  ++   A   G +  KE  A+G++++
Sbjct: 121 SIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTD 172


>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
           hydrolase; HET: MES; 2.50A {Homo sapiens} (A:142-749)
          Length = 608

 Score = 30.6 bits (67), Expect = 0.39
 Identities = 18/137 (13%), Positives = 39/137 (28%), Gaps = 1/137 (0%)

Query: 205 ILQLREIGVLLTAVMIAGRSGSAIVA-EIGSMKINEEIDAIRTMGLDFVRILISPRIWAL 263
           +  L E G+L  A  +AG SGS      + S     E             +  +P +   
Sbjct: 68  MKALYESGILDCATYVAGLSGSTWYMSTLYSHPDFPEKGPEEINEELMKNVSHNPLLLLT 127

Query: 264 IISLPLLTILANFSAIIGASIVIWKYYDIPFAVFFSRFHSTATLANIFTGLIKAPFMACA 323
              +             G  +     + +             TL+++   +  A      
Sbjct: 128 PQKVKRYVESLWKKKSSGQPVTFTDIFGMLIGETLIHNRMNTTLSSLKEKVNTAQCPLPL 187

Query: 324 IGIVAMKEGFAVGVHSN 340
              + +K   +  + ++
Sbjct: 188 FTCLHVKPDVSELMFAD 204


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 29.9 bits (67), Expect = 0.52
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 20/93 (21%)

Query: 192 QFGAEIFSIDLM---SILQLREIGVLLTAV----MIAGRSGSAIVAEIGSMKINEEIDAI 244
           Q       I       +  L+     + +      +  R       EI +   ++   A 
Sbjct: 32  QLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER-----TREIHNEAESQLRAAQ 86

Query: 245 RTMGLDFVRILISPRIWALIISLPLLTILANFS 277
           +  G DF +    PRI A     PL   LA +S
Sbjct: 87  QQWGNDFYK--RDPRI-A-----PLRGALATYS 111


>3bcy_A Protein YER067W; mixed alpha-helix/beta-sheet fold, UBL
           conjugation, unknown function; 1.70A {Saccharomyces
           cerevisiae} (A:)
          Length = 155

 Score = 27.9 bits (62), Expect = 2.1
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 92  KIKNQKPQRSFFYNSFK-NLHYHIGKKIVKFINDSCS 127
           KI +     S     F  +LH HI K ++K I  +  
Sbjct: 62  KISDAANSHS---KKFVRHLHQHIEKHLLKDIKQAVR 95


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 27.4 bits (61), Expect = 2.7
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 8/28 (28%)

Query: 195 AEIFSI-DLMSILQLREIGVLLT---AV 218
           A++ SI  L+ ++  R  G  +T   AV
Sbjct: 3   ADVMSIESLVEVVFYR--G--MTMQVAV 26


>1b1y_A Protein (beta-amylase); hydrolase(O-glycosyl); HET: GLC;
           2.50A {Hordeum vulgare} (A:1-86,A:136-500)
          Length = 451

 Score = 26.7 bits (59), Expect = 5.2
 Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 237 INEEIDAIRTMGLDFVRILISPRIWALII 265
           +  ++  +   G+D V + +    W L+ 
Sbjct: 29  LRAQLRKLVEAGVDGVMVDVW---WGLVE 54


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,718,411
Number of extensions: 119215
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 22
Length of query: 373
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 283
Effective length of database: 1,913,599
Effective search space: 541548517
Effective search space used: 541548517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.3 bits)