RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
(373 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 49.6 bits (118), Expect = 1e-06
Identities = 58/340 (17%), Positives = 102/340 (30%), Gaps = 117/340 (34%)
Query: 75 STHIEQLFSLISFTHRKKIKNQKPQRSF------FYNSFKNLHYHIGKKIVKFI--NDSC 126
+T E + + + F F+N ++ ND
Sbjct: 55 TTPAELVGKFLGYVSSLV--EPSKVGQFDQVLNLCLTEFEN----------CYLEGND-- 100
Query: 127 SQAHILGLVISNTGEFCASSYKFKGFLLSLIRQMYY--VGVSGVPVVILIS---FVTGAV 181
I L E + K K LI+ Y ++ P + F
Sbjct: 101 ----IHALAAKLLQENDTTLVKTK----ELIKN-YITARIMAKRPFDKKSNSALFRA--- 148
Query: 182 IAQQGAFQL-SQFGA-----EIFSIDLMSILQLREI----GVLLTAVMIAGRSGSAIVAE 231
+G QL + FG + F +LR++ VL+ ++ + + ++E
Sbjct: 149 -VGEGNAQLVAIFGGQGNTDDYFE-------ELRDLYQTYHVLVGDLI---KFSAETLSE 197
Query: 232 IGSMKINEEIDAIRTMGLDFVR------------ILIS-PRIWALIISLPL--LTILANF 276
+ ++ + + + T GL+ + L+S P IS PL + LA++
Sbjct: 198 L--IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP------ISCPLIGVIQLAHY 249
Query: 277 SAIIGASIVIWKYYDIPFAVFFSRF-----HSTATLANIFTGLIKAPFMACA-------- 323
+V K S HS GL+ A +A
Sbjct: 250 -------VVTAKLLGFTPGELRSYLKGATGHS--------QGLVTAVAIAETDSWESFFV 294
Query: 324 IGIVAMKEGFAVGVHSNSLGKKVTTCVVQSISIVIIIDSL 363
A+ F +GV S+ I+ DSL
Sbjct: 295 SVRKAITVLFFIGVRCY------EAYPNTSLPPSILEDSL 328
Score = 28.8 bits (64), Expect = 2.0
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 56/168 (33%)
Query: 247 MGLDFVRILISPR-IWA----------------LIISLPL-LTI----------LANFSA 278
MG+D + + + +W ++I+ P+ LTI N+SA
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 279 IIGASIVIWKYYDIPFAVFFSRF--HSTATLANIFTGLIKAP-FMACAI----------- 324
+I +IV K + F HST+ GL+ A F A+
Sbjct: 1691 MIFETIVDGK---LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 325 ---GIVAMKEGFAVGVHSNSLGKKVTTCVVQSISIVIIIDSLF-AIFY 368
G++ FA +SLG+ + S++ V+ I+SL +FY
Sbjct: 1748 KSKGLIPADATFA----GHSLGEYAA---LASLADVMSIESLVEVVFY 1788
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
glucanase, carbohydrate metabolism, cellulose
degradation, glycosidase; HET: BTB; 2.10A {Clostridium
cellulovorans}
Length = 515
Score = 31.2 bits (70), Expect = 0.43
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 236 KINEE-IDAIRTMGLDFVRILISPRIWALIIS 266
I+ I+ G + +R+ ++ W +
Sbjct: 45 MTTHAMINKIKEAGFNTLRLPVT---WDGHMG 73
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A
{Paenibacillus pabuli} PDB: 2jeq_A*
Length = 395
Score = 30.4 bits (67), Expect = 0.63
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 171 VILISFVTGAVIAQQGAFQLSQFGAEIFSIDLMSILQLREIGVLLTAVMIAGRSGSAIVA 230
IS + ++A A + + A+ + D I+ G L + A +G+
Sbjct: 7 KFGISSLALVLVA---AVAFTGWSAKASAADASQIVSEMGAGWNLGNQLEAAVNGTPNET 63
Query: 231 EIGSMKINEE-IDAIRTMGLDFVRILISPRIWALII 265
G+ + E I ++ G +RI +S + I
Sbjct: 64 AWGNPTVTPELIKKVKAAGFKSIRIPVS---YLNNI 96
>3lod_A Putative acyl-COA N-acyltransferase; structural genomics, PSI2,
MCSG, protein structure initiative; 2.50A {Klebsiella
pneumoniae subsp}
Length = 162
Score = 29.8 bits (67), Expect = 1.1
Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 29/142 (20%)
Query: 180 AVIAQQGAFQLSQFGAEIFSIDLMSILQLREIGVLLTAV---------MIAGRSGSAIVA 230
A+IA A+Q + + AE S L+ + QL V+ A+ A
Sbjct: 18 ALIAALDAWQETLYPAE--SNHLLDLSQLPPQTVIALAIRSPQGEAVGCGAIVLSEEGFG 75
Query: 231 EIGSMKINEEIDAIRTMGLD--FVRILISPRIWALIISLPLLTILANFSAI--------- 279
E+ + I+ + R L + L + +L L T + +AI
Sbjct: 76 EMKRVYIDPQH---RGQQLGEKLLAALEAKARQRDCHTLRLETGIHQHAAIALYTRNGYQ 132
Query: 280 -IGASIVIWKYYDIPFAVFFSR 300
Y P +VF +
Sbjct: 133 TRC---AFAPYQPDPLSVFMEK 151
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 312 TGLIKAPFMACAIGIVAMKEGFAVGVHSNSLGKKVTTCVV 351
+G IK P ACA + E +GV + L K C+V
Sbjct: 1096 SGPIKTPVGACATSV----ESVDIGVET-ILSGKARICIV 1130
>3oir_A Sulfate transporter sulfate transporter family PR; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; HET: MSE; 1.85A {Wolinella
succinogenes}
Length = 135
Score = 28.9 bits (65), Expect = 1.9
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 5 GITVFRFAGNWKSPEISEI----ADDVVMAINKSIQSDSAIV-DLSAITEIDTIGAELIM 59
G+ ++ G AD + ++ ++ + + + ID G +
Sbjct: 23 GVEIYEING--------PFFFGVADRLKGVLDVIEETPKVFILRMRRVPVIDATGMHALW 74
Query: 60 YFMEKYH---GKIKLQGVSTHIEQLFSLISFT 88
F E + L GVS + + F
Sbjct: 75 EFQESCEKRGTILLLSGVSDRLYGALNRFGFI 106
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of
glycosyl hydrolase, cellulose degradation; 1.60A
{Clostridium cellulolyticum H10} SCOP: c.1.8.3
Length = 380
Score = 28.3 bits (62), Expect = 2.7
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 233 GSMKINEE-IDAIRTMGLDFVRILISPRIW 261
+K ++ IDAI+ G + VRI +S
Sbjct: 58 SGIKTTKQMIDAIKQKGFNTVRIPVSWHPH 87
>3bcy_A Protein YER067W; mixed alpha-helix/beta-sheet fold, UBL
conjugation, unknown function; 1.70A {Saccharomyces
cerevisiae}
Length = 155
Score = 27.9 bits (62), Expect = 3.8
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 92 KIKNQKPQRSFFYNSFK-NLHYHIGKKIVKFINDSCS 127
KI + S F +LH HI K ++K I +
Sbjct: 62 KISDAANSHS---KKFVRHLHQHIEKHLLKDIKQAVR 95
>3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase,
glycosyl hydrolase family 5, mixed alpha-beta, TIM
barrel; HET: MSE; 1.60A {Prevotella bryantii}
Length = 353
Score = 27.9 bits (61), Expect = 4.0
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 233 GSMKINEE-IDAIRTMGLDFVRILISPRIW 261
G + ++ + + G + VRI ++
Sbjct: 49 GQPETTQDMMTFLMQNGFNAVRIPVTWYEH 78
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl
hydrolases; 1.90A {Clostridium thermocellum} SCOP:
c.1.8.3 PDB: 1cen_A 1cec_A
Length = 343
Score = 27.7 bits (60), Expect = 4.3
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 237 INEE-IDAIRTMGLDFVRILISPRIW 261
I E+ I+ I G D VR+ I
Sbjct: 29 ITEKDIETIAEAGFDHVRLPFDYPII 54
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 27.7 bits (61), Expect = 4.4
Identities = 6/95 (6%), Positives = 23/95 (24%), Gaps = 6/95 (6%)
Query: 30 AINKSIQSDSAIVDLSAITEIDTIGAELIMYFMEKYHGKIKLQGVSTHIEQLFSLISFTH 89
+ I + I +++ + K + ++ +
Sbjct: 291 VFYSFSMNRDRIQSDVLNKAAEVI-SDIGNKVGDYLGDAYK-----SLAREIADDVKNFQ 344
Query: 90 RKKIKNQKPQRSFFYNSFKNLHYHIGKKIVKFIND 124
K I++ + N + + + +
Sbjct: 345 GKTIRSYDDAMASLNKVLSNPGFKFNRADSDALAN 379
>3mmw_A Endoglucanase; TIM barrel fold, hydrolase; 1.85A {Thermotoga
maritima} PDB: 3mmu_A
Length = 317
Score = 27.8 bits (61), Expect = 4.6
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 236 KINEE-IDAIRTMGLDFVRILISPRIW 261
I +E D I+ G VRI I
Sbjct: 33 VIKDEFFDIIKEAGFSHVRIPIRWSTH 59
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, protein
structure initiative, joint center for structural
genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Length = 341
Score = 27.3 bits (59), Expect = 5.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 239 EEIDAIRTMGLDFVRILISPRIW 261
E+ + +FVRI + +W
Sbjct: 40 EDFLWMAQWDFNFVRIPMCHLLW 62
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 27.1 bits (59), Expect = 6.8
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 164 GVSGVPVVILISFVTGAVIAQQGAFQLSQ-FGAEIF 198
V +P +I + +G V+ + L + E F
Sbjct: 105 NVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQF 140
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.327 0.140 0.401
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,148,685
Number of extensions: 145131
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 22
Length of query: 373
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 279
Effective length of database: 3,414,294
Effective search space: 952588026
Effective search space used: 952588026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.9 bits)