RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
         (373 letters)



>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum
           [TaxId: 1521]}
          Length = 380

 Score = 28.0 bits (61), Expect = 1.5
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 233 GSMKINEE-IDAIRTMGLDFVRILISPRIW 261
             +K  ++ IDAI+  G + VRI +S    
Sbjct: 58  SGIKTTKQMIDAIKQKGFNTVRIPVSWHPH 87


>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 325

 Score = 27.8 bits (60), Expect = 1.7
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 239 EEIDAIRTMGLDFVRILISPRIW 261
           E+   +     +FVRI +   +W
Sbjct: 24  EDFLWMAQWDFNFVRIPMCHLLW 46


>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
           thermophilus [TaxId: 274]}
          Length = 393

 Score = 27.7 bits (60), Expect = 1.7
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 239 EEIDAIRTMGLDFVRILISPRIWALI 264
           E+   +R  GL  VRI      WAL+
Sbjct: 18  EDARRMREAGLSHVRIGEFA--WALL 41


>d2ooja1 b.159.2.1 (A:2-134) Hypothetical protein SO1590 {Shewanella
           oneidensis [TaxId: 70863]}
          Length = 133

 Score = 27.1 bits (60), Expect = 2.6
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 159 QMYYVGVSGVPVVILISFVTGAVIAQQGAFQLSQFG 194
                 V G    + I  V G +  +QG+F L  FG
Sbjct: 50  LSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFG 85


>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum
           [TaxId: 1515]}
          Length = 340

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)

Query: 237 INEE-IDAIRTMGLDFVRILISPRIW 261
           I E+ I+ I   G D VR+     I 
Sbjct: 29  ITEKDIETIAEAGFDHVRLPFDYPII 54


>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
           [TaxId: 5656]}
          Length = 144

 Score = 26.3 bits (57), Expect = 4.2
 Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 164 GVSGVPVVILISFVTGAVIAQQGAFQLSQ-FGAEIF 198
            V  +P ++ +   +G +I  Q    + +   A+ F
Sbjct: 105 DVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDF 140


>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata
           [TaxId: 5656]}
          Length = 144

 Score = 25.8 bits (55), Expect = 5.5
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 164 GVSGVPVVILISFVTGAVIAQQGAFQLSQ-FGAEIF 198
            V  +P +I +   +G V+  +    L +    E F
Sbjct: 103 NVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQF 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,373,642
Number of extensions: 63845
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 13
Length of query: 373
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,213,086
Effective search space: 346942596
Effective search space used: 346942596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.1 bits)