RPSBLAST alignment for GI: 254780139 and conserved domain: TIGR01188

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302

 Score =  110 bits (278), Expect = 3e-25
 Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 11/209 (5%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL--NLAKGKQNF 86
           ++ +N  +  GE+ G +G +G GK+  +R +  L+   SG  +V G  +     K ++  
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR-- 66

Query: 87  AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146
                +G++ Q+ ++   +T +EN+ M +     LP D  E      + +  L  E A+ 
Sbjct: 67  ----SIGIVPQYASVDEDLTGRENLEM-MGRLYGLPKDEAEERAEELLELFELG-EAADR 120

Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206
                SGGM +R+ +A +L   PD+LFLDEPT+GLDP         +  L+   G+++ +
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK-EEGVTILL 179

Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTI 235
            TH +      C+R+A+I    I+ EGT 
Sbjct: 180 TTHYMEEADKLCDRIAIIDHGRIIAEGTP 208