RPSBLAST alignment for GI: 254780139 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 73.7 bits (182), Expect = 5e-14
Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 34/229 (14%)
Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQN 85
L+N++L I GE + +IG G+GKS L++ +LGL G V + G ++ A ++N
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540
Query: 86 FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
+G + Q LF T+++NI++ AD + + + G+ E
Sbjct: 541 ------IGYVPQDPRLFYG-TLRDNIALG-----APYAD--DEEILRAAELAGVT-EFVR 585
Query: 146 LMP-----------FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
P LSGG + V+LARAL DP +L LDEPTS +D +EE +
Sbjct: 586 RHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD-NRSEE--RFKD 642
Query: 195 KLRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
+L+ L G ++ ++TH +L+ +R+ V+ I+ +G ++++
Sbjct: 643 RLKRWLAGKTLVLVTHRT-SLLDLVDRIIVMDNGRIVADGPKDQVLEAL 690