RPSBLAST alignment for GI: 254780139 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 39.4 bits (92), Expect = 9e-04
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 146 LMPFQLSGG------MIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE-FDKLLIKLRH 198
M + SGG +I R++LA + +L LDEPT+ LD EE +++ + +
Sbjct: 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170
Query: 199 SLGLSVYMITHD 210
+ +ITHD
Sbjct: 171 QKNFQLIVITHD 182