RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780139|ref|YP_003064552.1| putative ATP-binding component
of ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
         (257 letters)



>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
           YrbF; Provisional.
          Length = 269

 Score =  182 bits (463), Expect = 1e-46
 Identities = 85/244 (34%), Positives = 142/244 (58%), Gaps = 1/244 (0%)

Query: 8   SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
                ++ +R ++    NR I +NI+L + RG+I  ++G SG GK+ L+R I G I    
Sbjct: 2   QSVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH 61

Query: 68  GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127
           GE+   GE++      + +    ++ +LFQ GALF+ M V +N++ P++EH  LPA L+ 
Sbjct: 62  GEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH 121

Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
             V  K+  VGL    A LMP +LSGGM +R +LARA+A++PDL+  DEP  G DPI   
Sbjct: 122 STVMMKLEAVGL-RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG 180

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247
              KL+ +L  +LG++  +++HD+  ++S  +   ++  K I+  G+   +  + DP +R
Sbjct: 181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVR 240

Query: 248 SYFN 251
            + +
Sbjct: 241 QFLD 244


>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
           Provisional.
          Length = 343

 Score =  150 bits (381), Expect = 4e-37
 Identities = 86/210 (40%), Positives = 128/210 (60%), Gaps = 2/210 (0%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           LNN++L I  GEI GVIG+SG GKS L+R I  L    SG V V G+ L     K+    
Sbjct: 21  LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148
             ++G++FQH  L SS TV +N+++P+ E    P   I+  V   + +VGL  + A+  P
Sbjct: 81  RRQIGMIFQHFNLLSSRTVFDNVALPL-ELAGTPKAEIKARVTELLELVGL-SDKADRYP 138

Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
            QLSGG  +RV++ARALA +P +L  DE TS LDP       +LL  +   LGL++ +IT
Sbjct: 139 AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLIT 198

Query: 209 HDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           H+++ +   C+RVAVI    ++++GT+S++
Sbjct: 199 HEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228


>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
           protein.  Members of this family are the ATP-binding
           protein of the D-methionine ABC transporter complex.
           Known members belong to the Proteobacteria.
          Length = 343

 Score =  148 bits (374), Expect = 2e-36
 Identities = 83/210 (39%), Positives = 128/210 (60%), Gaps = 2/210 (0%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           LNN++L +  G+I GVIG+SG GKS L+R +  L    SG V V G+ L      +    
Sbjct: 21  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148
             ++G++FQH  L SS TV  N+++P+ E  N P D I+  V   +A+VGL  +  +  P
Sbjct: 81  RRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEIKRKVTELLALVGLG-DKHDSYP 138

Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
             LSGG  +RV++ARALA +P +L  DE TS LDP   +   +LL ++   LGL++ +IT
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLIT 198

Query: 209 HDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           H+++ +   C+ VAVI    ++++GT+S+I
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQGTVSEI 228


>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
           ATP-binding protein.  This ABC transporter ATP-binding
           protein is found in a number of genomes in operon-like
           contexts strongly suggesting a substrate specificity for
           2-aminoethylphosphonate (2-AEP). The characterized
           PhnSTUV system is absent in the genomes in which this
           system is found. These genomes encode systems for the
           catabolism of 2-AEP, making the need for a
           2-AEP-specific transporter likely.
          Length = 353

 Score =  144 bits (364), Expect = 3e-35
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 15/229 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           LS+ N+         L +I+L + +GE + ++G SG GK+ L+R I GL  + +G +   
Sbjct: 5   LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQG 64

Query: 74  GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
           G  +  L   K+++      G++FQ  ALF ++TV +NI+  +K    +    +   V  
Sbjct: 65  GRDITRLPPQKRDY------GIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAE 117

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            + +VGLP  +    P QLSGG  +RV+LARALA  P LL LDEP S LD   A   + L
Sbjct: 118 LLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD---ARVREHL 173

Query: 193 ---LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
              + +L+  LG++  M+THD    +S  +R+ V+    I + GT  +I
Sbjct: 174 RTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222


>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
           This family represents the NikE subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
          Length = 265

 Score =  137 bits (346), Expect = 3e-33
 Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87
           +L N++L I  GE +G++G SG GKS L R +LGL     G V   G+ L     KQ  A
Sbjct: 26  VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85

Query: 88  FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
           F   + ++FQ    A+   MTV++ I  P++   +L     +  +   + +VGL  E A+
Sbjct: 86  FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145

Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
            +P QLSGG ++R+++ARALA+ P L+ LDE  S LD +      +LL KL+ + G +  
Sbjct: 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYL 205

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247
            ITHDL  + S C RVAV+ K  I++E  ++ ++    P  R
Sbjct: 206 FITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGR 247


>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
           subunit.  This model describes the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea. This transport system belong
           to the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Functionally, this transport system is involved
           in osmoregulation. Under conditions of stress, the
           organism recruits these transport system to accumulate
           glycine betaine and other solutes which offer
           osmo-protection. It has been demonstrated that glycine
           betaine uptake is accompanied by symport with sodium
           ions. The locus has been named variously as proU or
           opuA. A gene library from L.lactis functionally
           complements an E.coli proU mutant. The comlementing
           locus is similar to a opuA locus in B.sutlis. This
           clarifies the differences in nomenclature.
          Length = 363

 Score =  136 bits (345), Expect = 4e-33
 Identities = 74/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGKQNFA 87
           +N+ +L I +GEI  ++G SG+GKS  +R +  LI   +G++ + GE++   +  +    
Sbjct: 9   VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68

Query: 88  FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147
              K+G++FQ  ALF  MT+ +N S+   E L  P    +      + +VGL  E  +  
Sbjct: 69  RRKKIGMVFQQFALFPHMTILQNTSL-GPELLGWPEQERKEKALELLKLVGLE-EYEHRY 126

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           P +LSGGM +RV LARALA +PD+L +DE  S LDP+  +     L KL+ +L  ++  I
Sbjct: 127 PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI 186

Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIV-DSNDPWIRSYF 250
           THDL+  I   +R+ +++   I++ GT  +I+ +  + ++  + 
Sbjct: 187 THDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230


>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding protein
           of a family of ABC transporters for inorganic phosphate.
           In the model species Escherichia coli, a constitutive
           transporter for inorganic phosphate, with low affinity,
           is also present. The high affinity transporter that
           includes this polypeptide is induced when extracellular
           phosphate concentrations are low. The proteins most
           similar to the members of this family but not included
           appear to be amino acid transporters.
          Length = 247

 Score =  131 bits (331), Expect = 2e-31
 Identities = 66/218 (30%), Positives = 114/218 (52%), Gaps = 12/218 (5%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LGLIP--RVS 67
            + + NL +    +  L NINLDI + ++  +IG SG GKS L+R +     L+P  R+ 
Sbjct: 1   AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60

Query: 68  GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127
           G+V   G+ +   K         ++G++FQ    F  M++ +NI+   + H       ++
Sbjct: 61  GKVLFDGQDIY-DKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELD 118

Query: 128 HIVHTKIAIVGLPPET---ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
            IV   +    L  E     +     LSGG  +R+ +ARALA++P++L LDEPTS LDPI
Sbjct: 119 EIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVA 222
           A  + ++L+ +L+     ++ ++TH++       +R A
Sbjct: 179 ATGKIEELIQELKKK--YTIVIVTHNMQQAARISDRTA 214


>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE.  This
           model describes FtsE, a member of the ABC transporter
           ATP-binding protein family. This protein, and its
           permease partner FtsX, localize to the division site. In
           a number of species, the ftsEX gene pair is located next
           to FtsY, the signal recognition particle-docking
           protein.
          Length = 214

 Score =  129 bits (326), Expect = 8e-31
 Identities = 69/200 (34%), Positives = 110/200 (55%), Gaps = 4/200 (2%)

Query: 13  ILSVRNLTIE-LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           ++   N++         L++++L I +GE L + G SG GK+ L++ + G +    G+V+
Sbjct: 1   MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           + GE +N  +G+Q      ++GV+FQ   L    TV EN+++P+ E        I+  V 
Sbjct: 61  IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL-EVRGKKEREIQRRVG 119

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
             +  VGL  + A+  P QLSGG  +RV++ARA+   P LL  DEPT  LDP  +E    
Sbjct: 120 AALRQVGLEHK-ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD 178

Query: 192 LLIKLRHSLGLSVYMITHDL 211
           LL +L +  G +V + THDL
Sbjct: 179 LLKRL-NKRGTTVIVATHDL 197


>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
           Provisional.
          Length = 268

 Score =  129 bits (325), Expect = 1e-30
 Identities = 75/212 (35%), Positives = 107/212 (50%), Gaps = 2/212 (0%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87
           +LNN++L +  GE + ++G SG GKS L R ++GL     G V   GE L      Q  A
Sbjct: 27  VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86

Query: 88  FSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
           F   + ++FQ    A+    TV+E I  P++  L+L            +  V L     +
Sbjct: 87  FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146

Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
             P QLSGG ++RV LARALA++P LL LDE  S LD +      +LL KL+   G +  
Sbjct: 147 KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACL 206

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237
            ITHDL  +   C RV V+    I++   + D
Sbjct: 207 FITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238


>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
           Provisional.
          Length = 353

 Score =  127 bits (321), Expect = 3e-30
 Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 20/232 (8%)

Query: 19  LTIELNN-------RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           ++IE+ N         +LN+I+LDI  G+++ ++G SG+GK+ L+R I GL  + SG ++
Sbjct: 1   MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS-----MPIKEHLNLPADLI 126
             G  ++    +       K+G +FQH ALF  MTV +NI+     +P +E  N  A  I
Sbjct: 61  FHGTDVSRLHARDR-----KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPN--AAAI 113

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
           +  V   + +V L    A+  P QLSGG  +RV+LARALA++P +L LDEP   LD    
Sbjct: 114 KAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           +E  + L +L   L  +   +THD    +   +RV V+ +  I + GT   +
Sbjct: 173 KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224


>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
           
          Length = 237

 Score =  123 bits (310), Expect = 5e-29
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 16  VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75
           + N++    +   L+++NL++  G ++ ++G SG+GKS L+R I GL    SG +++ G+
Sbjct: 3   IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ 62

Query: 76  HLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA 135
                  +       K+G +FQH ALF  +TV++NI+  + E    P   I+  V   + 
Sbjct: 63  DATRVHARDR-----KIGFVFQHYALFKHLTVRDNIAFGL-EIRKHPKAKIKARVEELLE 116

Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195
           +V L     +  P QLSGG  +RV+LARALA++P +L LDEP   LD    +E    L K
Sbjct: 117 LVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRK 175

Query: 196 LRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
           L   + ++   +THD    +   +R+ V+    I + G+  ++ D
Sbjct: 176 LHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220


>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
           Provisional.
          Length = 377

 Score =  121 bits (304), Expect = 2e-28
 Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +L +RNLT   + +  +++++L I +GEI  ++G+SG GKS L+R + G     +G++ +
Sbjct: 19  LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
            G  L+     Q       + ++FQ  ALF  MTV++NI+  +K+   LP   I   V+ 
Sbjct: 79  DGVDLSHVPPYQR-----PINMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNE 132

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            + +V +  E A   P QLSGG  +RV+LAR+LA  P LL LDEP   LD    +     
Sbjct: 133 MLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           ++ +   +G++  M+THD    ++   R+A++ +   ++ G   +I
Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237


>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
           This model describes the ATP binding subunits of nitrate
           transport in bacteria and archaea. This protein belongs
           to the ATP-binding cassette (ABC) superfamily. It is
           thought that the two subunits encoded by ntrC and ntrD
           form the binding surface for interaction with ATP. This
           model is restricted in identifying ATP binding subunit
           associated with the nitrate transport. Nitrate
           assimilation is aided by other proteins derived from the
           operon which among others include products of ntrA - a
           regulatory protein; ntrB - a hydropbobic transmembrane
           permease and narB - a reductase.
          Length = 230

 Score =  120 bits (303), Expect = 3e-28
 Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 10/211 (4%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L  +NL I +GE + +IG SG GKS L+  I GL    SG V +        +GKQ    
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL--------EGKQITEP 52

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHL-NLPADLIEHIVHTKIAIVGLPPETANLM 147
                V+FQ+ +L   +TV+ENI++ +   L +L       IV   IA+VGL  E A+  
Sbjct: 53  GPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKR 111

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           P QLSGGM +RV++ARAL+I P +L LDEP   LD +      + L+++     ++V M+
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171

Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           THD++  +   +RV ++        G I ++
Sbjct: 172 THDVDEALLLSDRVVMLTNGPAANIGQILEV 202


>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
           protein OppF; Provisional.
          Length = 331

 Score =  118 bits (297), Expect = 2e-27
 Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 3/198 (1%)

Query: 30  NNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFS 89
           + + L +  GE LGV+G SG GKS   R I+GL+    GEV  LG+ L   K  +  A  
Sbjct: 38  DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97

Query: 90  AKLGVLFQH--GALFSSMTVQENISMPIKE-HLNLPADLIEHIVHTKIAIVGLPPETANL 146
           + + ++FQ    +L   MT+ E I+ P++  H  L    ++  V   +  VGL P   N 
Sbjct: 98  SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR 157

Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206
            P + SGG  +R+ +ARAL ++P L+  DEP S LD     +   LL +L+  +GLS+  
Sbjct: 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF 217

Query: 207 ITHDLNNLISTCNRVAVI 224
           I HDL  +    +RV V+
Sbjct: 218 IAHDLAVVKHISDRVLVM 235


>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
           This family represents the NikD subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
           NikD and NikE are homologous.
          Length = 230

 Score =  118 bits (297), Expect = 2e-27
 Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 16/220 (7%)

Query: 31  NINLDILRGEILGVIGSSGTGKSILMRGILGLIP----RVSGEVKVLGEHLNLAKGKQNF 86
           ++NL + RGE+L ++G SG+GKS+    ILGL+P    + SGE+ + G  L     +   
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62

Query: 87  AFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144
                +  + Q+   A     T+  +    ++    L       I+    A VGLP +  
Sbjct: 63  ----HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA-VGLP-DPE 116

Query: 145 NLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201
            ++   PFQLSGGM++RV +A AL ++P  L  DEPT+ LD +      KLL +LR   G
Sbjct: 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176

Query: 202 LSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
             + +ITHDL  +    + VAV+    I++ GT+ +I  +
Sbjct: 177 TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216


>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
           family.  Members of this protein family are found mostly
           in the Cyanobacteria, but also in the Planctomycetes.
           Cyanobacterial examples are involved in heterocyst
           formation, by which some fraction of members of the
           colony undergo a developmental change and become capable
           of nitrogen fixation. The DevBCA proteins are thought
           export of either heterocyst-specific glycolipids or an
           enzyme essential for formation of the laminated layer
           found in heterocysts.
          Length = 220

 Score =  116 bits (293), Expect = 5e-27
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 5/202 (2%)

Query: 13  ILSVRNLT----IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68
           ++S+RNL          + +L +INL+I  GEI+ + G SG+GK+ L+  I GL     G
Sbjct: 1   VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
            +KVLG+ L  A  K+       +G +FQ   L   +T ++N+ M ++   NL       
Sbjct: 61  SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE 120

Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188
                +  VGL  +  +  P  LSGG  +RV++ARAL   P L+  DEPT+ LD  +  +
Sbjct: 121 RARAMLEAVGL-GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRD 179

Query: 189 FDKLLIKLRHSLGLSVYMITHD 210
             +L+ KL    G ++ ++THD
Sbjct: 180 VVELMQKLAREQGCTILIVTHD 201


>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
           protein.  Members of this protein family are the
           ATP-binding subunit of a three-protein transporter. This
           family belongs, more broadly, to the family of proline
           and glycine-betaine transporters, but members have been
           identified by direct characterization and by
           bioinformatic means as choline transporters. Many
           species have several closely-related members of this
           family, probably with variable abilities to act
           additionally on related quaternary amines.
          Length = 382

 Score =  115 bits (290), Expect = 9e-27
 Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 22/233 (9%)

Query: 30  NNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL--GEHLNLAK---GKQ 84
            N +LDI  GEI  ++G SG+GKS L+R + GL P   G V V      +++A       
Sbjct: 41  ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATL 100

Query: 85  NFAFSAKLGVLFQHGALFSSMTVQENIS-------MPIKEHLNLPADLIEHIVHTKIAIV 137
               + ++ ++FQ  AL   +TV+EN++       MP  E            V  ++ +V
Sbjct: 101 RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKR--------VDEQLELV 152

Query: 138 GLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197
           GL  + A+  P +LSGGM +RV LARA A+D D+L +DEP S LDP+   +    L++L+
Sbjct: 153 GLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ 211

Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV-DSNDPWIRSY 249
             L  ++  ++HDL+  +   NR+A+++   I++ GT  +IV +  + ++  +
Sbjct: 212 AKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264


>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
           ATP-binding component PhnT.  This ATP-binding component
           of an ABC transport system is found in Salmonella and
           Burkholderia lineages in the vicinity of enzymes for the
           breakdown of 2-aminoethylphosphonate.
          Length = 362

 Score =  115 bits (289), Expect = 1e-26
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 18/224 (8%)

Query: 16  VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--VSGEVKVL 73
           + +L +      +L++++L+I  GE+L +IG SG GK+ L+R I G +    ++G + + 
Sbjct: 8   IDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIA 67

Query: 74  GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
              L +    K+       L +LFQ+ ALF  + V++N++  ++    +P   I   V  
Sbjct: 68  DRDLTHAPPHKRG------LALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVAD 120

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            + +VGL    A+L P QLSGGM +R+++ARA+AI+PD+L LDEP S LD        + 
Sbjct: 121 ALKLVGLGDAAAHL-PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE 179

Query: 193 LIKLRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235
           +  L   L  L++  +THD ++ ++  ++       GIMK+G +
Sbjct: 180 IAALHEELPELTILCVTHDQDDALTLADKA------GIMKDGRL 217


>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score =  115 bits (290), Expect = 1e-26
 Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +L + +L  +   +  L +INL +  GE+L V+G SG GK+ L+  I G +P   G + +
Sbjct: 1   MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
            G+ +            A+ GV+FQ+  L     VQ+N++  + +   +       I H 
Sbjct: 61  DGKPVE--------GPGAERGVVFQNEGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQ 111

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            +  VGL         +QLSGG  +RV +ARALA +P LL LDEP   LD    E+   L
Sbjct: 112 MLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170

Query: 193 LIKLRHSLGLSVYMITHDL 211
           L+KL    G  V +ITHD+
Sbjct: 171 LLKLWQETGKQVLLITHDI 189


>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 305

 Score =  114 bits (287), Expect = 2e-26
 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 45/263 (17%)

Query: 16  VRNLTIELNNRI-----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           V+N+    N ++      L+N++++I +GE + +IG +G+GK+  +  +  L+   +G +
Sbjct: 5   VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64

Query: 71  KVLGEHLNLAKGKQNF---------------------AFSAKLGVLFQHG--ALFSSMTV 107
           + + +     K  +                           ++GV+FQ     LF   T+
Sbjct: 65  EWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TI 123

Query: 108 QENI-------SMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVS 160
           +++I        +  +E     A  IE        +VGL        PF+LSGG  +RV+
Sbjct: 124 EKDIIFGPVSMGVSKEEAKKRAAKYIE--------LVGLDESYLQRSPFELSGGQKRRVA 175

Query: 161 LARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNR 220
           LA  LA++PD L  DEPT+GLDP   +E  ++   L +  G ++ ++THDL+N++    R
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLDNVLEWTKR 234

Query: 221 VAVIQKKGIMKEGTISDIVDSND 243
               +   I+K+G   DI+  N 
Sbjct: 235 TIFFKDGKIIKDGDTYDILSDNK 257


>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
           ATP-binding protein.  Members of this family are the
           ATP-binding protein of a conserved four gene ABC
           transporter operon found next to ectoine unilization
           operons and ectoine biosynthesis operons. Ectoine is a
           compatible solute that protects enzymes from high
           osmolarity. It is released by some species in response
           to hypoosmotic shock, and it is taken up by a number of
           bacteria as a compatible solute or for consumption. This
           family shows strong sequence similiarity to a number of
           amino acid ABC transporter ATP-binding proteins.
          Length = 252

 Score =  114 bits (286), Expect = 3e-26
 Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 11/235 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           +   ++T       +L+ +N  +  GE + +IG SG+GKS ++R ++ L P   G+++V 
Sbjct: 1   VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60

Query: 74  GEHLNLAKGKQNFAFSA----------KLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123
           GE L    G+      A          K+G++FQ   LF   TV +N++      L +  
Sbjct: 61  GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120

Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
              E      + +VGL  + A+ MP QLSGG  +RV++ARALA+ P ++  DE TS LDP
Sbjct: 121 AEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
               E   ++ +L     L++ ++TH++       +RV    K  I+++G   +I
Sbjct: 180 ELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234


>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
           protein.  Phosphonates are a class of
           phosphorus-containing organic compound with a stable
           direct C-P bond rather than a C-O-P linkage. A number of
           bacterial species have operons, typically about 14 genes
           in size, with genes for ATP-dependent transport of
           phosphonates, degradation, and regulation of the
           expression of the system. Members of this protein family
           are the ATP-binding cassette component of tripartite ABC
           transporters of phosphonates.
          Length = 243

 Score =  113 bits (286), Expect = 3e-26
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 12/244 (4%)

Query: 13  ILSVRNLTIELNN-RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           +L V NL+    N +  L NINL+I  GE + +IG SG GKS L+R I  L+   SG + 
Sbjct: 1   MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMP-------IKEHLNLPAD 124
           + G  +   +GK+      ++G++FQH  L   +TV EN+           +  L   ++
Sbjct: 61  LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120

Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
             +    + +  VGL  + A     QLSGG  +RV++ARALA  PDL+  DEP + LDP 
Sbjct: 121 EDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDP 244
            +++    L ++    G++V +  H ++      +R+  ++   I+ +G  S++   +D 
Sbjct: 180 TSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL---DDE 236

Query: 245 WIRS 248
            +R 
Sbjct: 237 VLRH 240


>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score =  113 bits (285), Expect = 4e-26
 Identities = 70/241 (29%), Positives = 131/241 (54%), Gaps = 9/241 (3%)

Query: 10  EEKILSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
           +E+I+ V +++    +     L +++  +  GE + ++G +G+GKS L + + GL+   +
Sbjct: 2   KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61

Query: 68  GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLI 126
           G + V G  L+    +  +    ++G++FQ+    F   TVQ++++  + E++ +P + +
Sbjct: 62  GTITVGGMVLS---EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL-ENIGVPREEM 117

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
              V   +  VG+  +  N  P +LSGG  +RV++A  LA+ PD++ LDE TS LDP   
Sbjct: 118 VERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWI 246
            E  + + +L+   G++V  ITHDL+      +RV V+ K  I++EGT  +I  S     
Sbjct: 177 REVLETVRQLKEQKGITVLSITHDLDEAAQA-DRVIVMNKGEILEEGTPEEIFKSGHMLQ 235

Query: 247 R 247
            
Sbjct: 236 E 236


>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 258

 Score =  113 bits (285), Expect = 5e-26
 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L  RNL++ L  R +L++++L +  GE++ ++G +G GKS L+R + G +   SGEV++ 
Sbjct: 3   LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLN 62

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G  L      +    + +  VL QH +L    TV+E ++M    H    A+  + +V   
Sbjct: 63  GRPLADWSPAE---LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAED-DALVAAA 118

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALA------IDPDLLFLDEPTSGLDPIAAE 187
           +A V L        P QLSGG  +RV LAR LA        P  L LDEPTS LD     
Sbjct: 119 LAQVDLAHLAGRDYP-QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237
              +L  +L H  GL+V ++ HDLN      +R+ ++ +  ++ +GT ++
Sbjct: 178 HVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227


>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 290

 Score =  112 bits (282), Expect = 9e-26
 Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 21/224 (9%)

Query: 26  RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLA--KGK 83
           R  L ++N+ I  G  + +IG +G+GKS L++ + GL+   SG V  +GE +  A  K K
Sbjct: 20  RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT-IGERVITAGKKNK 78

Query: 84  QNFAFSAKLGVLFQ--HGALFSSMTVQENIS-------MPIKEHLNLPADLIEHIVHTKI 134
           +      K+G++FQ     LF   TV+++I        +  ++      ++IE       
Sbjct: 79  KLKPLRKKVGIVFQFPEHQLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIE------- 130

Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
            +VGLP E     PF+LSGG ++RV++A  LA++P++L LDEPT+GLDP   +E  ++  
Sbjct: 131 -LVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFY 189

Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           KL    GL+  ++TH + +     +++ V+ K  +  +GT  +I
Sbjct: 190 KLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233


>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
           This model describes the energy-transducing ATPase
           subunit ThiQ of the ThiBPQ thiamine (and thiamine
           pyrophosphate) ABC transporter in several
           Proteobacteria. This protein is found so far only in
           Proteobacteria, and is found in complete genomes only if
           the ThiB and ThiP subunits are also found.
          Length = 213

 Score =  112 bits (281), Expect = 1e-25
 Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 9/198 (4%)

Query: 33  NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-HLNLAKGKQNFAFSAK 91
           +L++  GEI+ ++G SG GKS L+  I G I   SG +KV  + H  LA  ++  +    
Sbjct: 18  DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS---- 73

Query: 92  LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQL 151
             +LFQ   LF+ +TV++NI + +   L L A+  E +V      VG+      L P QL
Sbjct: 74  --MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQ-VGIADYLDRL-PEQL 129

Query: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           SGG  +RV+LAR L     +L LDEP S LDP+  EE   L+ +L      ++ M+TH L
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189

Query: 212 NNLISTCNRVAVIQKKGI 229
           ++  +  +++AV+ +  I
Sbjct: 190 SDARAIASQIAVVSQGKI 207


>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
           component A2.  The enzyme that catalyzes the final step
           in methanogenesis, methyl coenzyme M reductase, contains
           alpha, beta, and gamma chains. In older literature, the
           complex of alpha, beta, and gamma chains was termed
           component C, while this single chain protein was termed
           methyl coenzyme M reductase system component A2.
          Length = 520

 Score =  111 bits (280), Expect = 2e-25
 Identities = 77/245 (31%), Positives = 136/245 (55%), Gaps = 17/245 (6%)

Query: 9   QEEKILSVRNLT---IELNNRII--LNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63
             E I+ VRN++   I ++  ++  ++N++L++  GEI G++G+SG GK+ L + I G++
Sbjct: 275 VGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334

Query: 64  PRVSGEVKVL--GEHLNLAKGKQNFAFSAK--LGVLFQHGALFSSMTVQENISMPIKEHL 119
              SGEV V    E +++ K   +    AK  +G+L Q   L+   TV +N++  I   L
Sbjct: 335 EPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG--L 392

Query: 120 NLPADL-IEHIVHTKIAIVGLPPETA----NLMPFQLSGGMIKRVSLARALAIDPDLLFL 174
            LP +L     V T + +VG   E A    +  P +LS G   RV+LA+ L  +P ++ L
Sbjct: 393 ELPDELARMKAVIT-LKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVIL 451

Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
           DEPT  +DPI   +    ++K R  +  +  +++HD++ ++  C+R A+++   I+K G 
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511

Query: 235 ISDIV 239
             +IV
Sbjct: 512 PEEIV 516



 Score = 92.6 bits (230), Expect = 1e-19
 Identities = 74/267 (27%), Positives = 116/267 (43%), Gaps = 51/267 (19%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL--IPRVSGEV- 70
           + V+NLT + + + +L NI+  I  GE+LG++G SG GKS+LM  + G+      SG + 
Sbjct: 1   IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60

Query: 71  ----------------------KVLGEHL--------NLAKGKQNFAFSAKLGVLFQHG- 99
                                  V G  L        NL+  K       ++ ++ Q   
Sbjct: 61  YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD-KLRRRIRKRIAIMLQRTF 119

Query: 100 ALFSSMTVQEN-------ISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLS 152
           AL+   TV +N       I    KE +    DLIE +V     I  +  +        LS
Sbjct: 120 ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE-MVQLSHRITHIARD--------LS 170

Query: 153 GGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212
           GG  +RV LAR LA +P L   DEPT  LDP  A+     L +   + G+S+ + +H   
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230

Query: 213 NLISTCNRVAVIQKKGIMKEGTISDIV 239
            +    ++   ++   I +EGT  ++V
Sbjct: 231 VIEDLSDKAIWLENGEIKEEGTPDEVV 257


>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score =  111 bits (279), Expect = 2e-25
 Identities = 66/236 (27%), Positives = 124/236 (52%), Gaps = 10/236 (4%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---IPRVS 67
           E I+ + N +     +  + N+ + I + +I  +IG SG GK+ L+R I  +   IP   
Sbjct: 1   EPIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60

Query: 68  GEVKVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126
            E K+  +  ++   + +   +  K+G++FQ    F  M++ +N++   + H       +
Sbjct: 61  VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKL 119

Query: 127 EHIVHTKIAIVGLPPETA---NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
           + IV   +    L  E     N    +LSGG  +R+ +ARALA++P+++ LDEPTS LDP
Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
           IA +  +KLL +L  S   ++ ++TH++   I   + +A + +  +++ G   +IV
Sbjct: 180 IATQRIEKLLEEL--SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233


>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 288

 Score =  110 bits (277), Expect = 2e-25
 Identities = 73/219 (33%), Positives = 127/219 (57%), Gaps = 8/219 (3%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL--NLAKGKQNF 86
           L +I+L++ +G    +IG +G+GKS L++ + GL+    G+V V G+ +  + +K K+  
Sbjct: 22  LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-GDIVVSSTSKQKEIK 80

Query: 87  AFSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144
               K+GV+FQ     LF    +++    P  ++  +P +  E I   K+ +VGL  E  
Sbjct: 81  PVRKKVGVVFQFPESQLFEETVLKDVAFGP--QNFGIPKEKAEKIAAEKLEMVGLADEFW 138

Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204
              PF+LSGG ++RV++A  LA++P++L LDEPT+GLDP A  E  +L   + H  G +V
Sbjct: 139 EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI-HQSGQTV 197

Query: 205 YMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
            ++TH ++++    + V +++K  I+  GT SD+    D
Sbjct: 198 VLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236


>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
           ATP-binding subunit.  This model describes daunorubicin
           resistance ABC transporter, ATP binding subunit in
           bacteria and archaea. This model is restricted in its
           scope to preferentially recognize the ATP binding
           subunit associated with effux of the drug, daunorubicin.
           This transport system belong to the larger ATP-Binding
           Cassette (ABC) transporter superfamily. The
           characteristic feature of these transporter is the
           obligatory coupling of ATP hydrolysis to substrate
           translocation. The minimal configuration of bacterial
           ABC transport system: an ATPase or ATP binding subunit;
           An integral membrane protein; a hydrophilic polypetpide,
           which likely functions as substrate binding protein. In
           eukaryotes proteins of similar function include p-gyco
           proteins, multidrug resistance protein etc.
          Length = 302

 Score =  110 bits (278), Expect = 3e-25
 Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 11/209 (5%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL--NLAKGKQNF 86
           ++ +N  +  GE+ G +G +G GK+  +R +  L+   SG  +V G  +     K ++  
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR-- 66

Query: 87  AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146
                +G++ Q+ ++   +T +EN+ M +     LP D  E      + +  L  E A+ 
Sbjct: 67  ----SIGIVPQYASVDEDLTGRENLEM-MGRLYGLPKDEAEERAEELLELFELG-EAADR 120

Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206
                SGGM +R+ +A +L   PD+LFLDEPT+GLDP         +  L+   G+++ +
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK-EEGVTILL 179

Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTI 235
            TH +      C+R+A+I    I+ EGT 
Sbjct: 180 TTHYMEEADKLCDRIAIIDHGRIIAEGTP 208


>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
           subunit.  This model describes spermidine/putrescine ABC
           transporter, ATP binding subunit in bacteria and its
           equivalents in archaea. This transport system belong to
           the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Polyamines like spermidine and putrescine play
           vital role in cell proliferation, differentiation, and
           ion homeostasis. The concentration of polyamines within
           the cell are regulated by biosynthesis, degradation and
           transport (uptake and efflux included).
          Length = 325

 Score =  109 bits (275), Expect = 6e-25
 Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 7/195 (3%)

Query: 44  VIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFS 103
           ++G SG GK+ L+R + G     SG + + GE +              + ++FQ  ALF 
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-----PHLRHINMVFQSYALFP 55

Query: 104 SMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLAR 163
            MTV+EN++  +K    +P   I+  V   + +V L  E A+  P QLSGG  +RV+LAR
Sbjct: 56  HMTVEENVAFGLKMR-KVPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALAR 113

Query: 164 ALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAV 223
           AL   P +L LDEP S LD    ++    L  ++  LG++   +THD    ++  +R+A+
Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173

Query: 224 IQKKGIMKEGTISDI 238
           ++K  I + GT  +I
Sbjct: 174 MRKGKIAQIGTPEEI 188


>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
           Family protein. 
          Length = 216

 Score =  109 bits (274), Expect = 7e-25
 Identities = 64/189 (33%), Positives = 106/189 (56%), Gaps = 4/189 (2%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L+N+N  I +GE++ ++G SG GKS  ++ ILG+     G+++  G+ L   +G++    
Sbjct: 19  LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFL 78

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148
              +G++FQ   L S  TV +N++ P+   + +P       V   +  VGL    A+ +P
Sbjct: 79  RRHIGMVFQDHRLLSDRTVYDNVAFPL-RIIGVPPRDANERVSAALEKVGL-EGKAHALP 136

Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
            QLSGG  +RV++ARA+   P LL  DEPT  LDP  + +  +L  +  +  G +V + T
Sbjct: 137 MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEF-NRRGTTVLVAT 195

Query: 209 HDLNNLIST 217
           HD+ NL+ T
Sbjct: 196 HDI-NLVET 203


>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 275

 Score =  109 bits (274), Expect = 7e-25
 Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 13  ILSVRNLTIELNN-RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           IL  R+L     +    L  IN    +GE++ ++G +G GKS L     G++   SGEV 
Sbjct: 1   ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISM-PIKEHLNLPADLIEH 128
           + GE +   K K        +G++FQ+    LF+  TV+E+++  P+  +L L  + +E 
Sbjct: 61  IKGEPIKYDK-KSLLEVRKTVGIVFQNPDDQLFAP-TVEEDVAFGPL--NLGLSKEEVEK 116

Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188
            V   +  VG+     N  P  LSGG  KRV++A  LA+ P+++ LDEPTSGLDP+ A +
Sbjct: 117 RVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175

Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
             KLL  L    G+++ + THD++ +    ++V V+    I+KEGT  ++
Sbjct: 176 IMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224


>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score =  109 bits (273), Expect = 9e-25
 Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 13  ILSVRNLT-IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           ++  R+L      ++  LNNIN    R   + VIG +G GKS L R   G++   SG V 
Sbjct: 3   LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISM-PIKEHLNLPADLIEH 128
           + GE +     ++   F   +G++FQ+    +FS  TV+++I+  PI  +L L  + + H
Sbjct: 63  IRGEPITKENIREVRKF---VGLVFQNPDDQIFSP-TVEQDIAFGPI--NLGLDEETVAH 116

Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188
            V + + ++GL  E  + +P  LSGG  KRV++A  +A++P +L LDEPT+GLDP   +E
Sbjct: 117 RVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175

Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
               L  L  + G++V   TH L+ +    + + V+ K  I+  GT+ +I    D
Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230


>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
           protein; Reviewed.
          Length = 375

 Score =  108 bits (273), Expect = 1e-24
 Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 7/236 (2%)

Query: 3   LNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL 62
           LN  PS    ++ +R ++   + + +++N++L I  GE L ++G SG GK+ ++R I G 
Sbjct: 4   LNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63

Query: 63  IPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122
               SG + + G+ +     +        +  +FQ  ALF  MTV EN++  ++     P
Sbjct: 64  ETPDSGRIMLDGQDITHVPAENRH-----VNTVFQSYALFPHMTVFENVAFGLRMQ-KTP 117

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           A  I   V   + +V L  E A   P QLSGG  +RV++ARA+   P +L LDE  S LD
Sbjct: 118 AAEITPRVMEALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
               ++    L  L+  LG++   +THD    ++  +R+ V++   I ++GT  +I
Sbjct: 177 YKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232


>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score =  108 bits (272), Expect = 1e-24
 Identities = 62/225 (27%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF-A 87
           L+NI+ ++  G  + ++G +G+GKS LM+    L+   SG + + G H+    G +N   
Sbjct: 23  LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82

Query: 88  FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
              K+ ++FQ     LF + TV +++    K +     D  +      +  VGL  +  +
Sbjct: 83  LRKKVSLVFQFPEAQLFEN-TVLKDVEFGPK-NFGFSEDEAKEKALKWLKKVGLSEDLIS 140

Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
             PF+LSGG ++RV++A  +A +P++L LDEP +GLDP   +E  +L    + + G +V 
Sbjct: 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVI 199

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYF 250
           ++TH+++++    + V V++   ++K  +  +I  S+  W++ ++
Sbjct: 200 LVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF-SDKEWLKKHY 243


>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
           protein.  This model represents LolD, a member of the
           ABC transporter family (pfam00005). LolD is involved in
           localization of lipoproteins in some bacteria. It works
           with a transmembrane protein LolC, which in some species
           is a paralogous pair LolC and LolE. Depending on whether
           the residue immediately following the new, modified
           N-terminal Cys residue, the nascent lipoprotein may be
           carried further by LolA and LolB to the outer membrane,
           or remain at the inner membrane. The top scoring
           proteins excluded by this model include homologs from
           the archaeal genus Methanosarcina.
          Length = 221

 Score =  108 bits (272), Expect = 1e-24
 Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 18/207 (8%)

Query: 27  IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN-LAKGKQN 85
            +L  ++L I +GEI+ ++GSSG+GKS L+  + GL    SGEV   G+ L+ L+  ++ 
Sbjct: 19  RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78

Query: 86  FAFSAKLGVLFQHGALFSSMTVQENISMP-------IKEHLNLPADLIEHIVHTKIAIVG 138
              + KLG ++Q   L    T  EN++MP       +KE      +++E         VG
Sbjct: 79  KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEK--------VG 130

Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198
           L     N  P +LSGG  +RV++ARAL   P L+  DEPT  LD   A+    L+++L  
Sbjct: 131 LE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189

Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQ 225
            L  S  ++THDL  L    +RV  ++
Sbjct: 190 ELNTSFLVVTHDL-ELAKKLDRVLEMK 215


>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score =  107 bits (270), Expect = 3e-24
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 6/213 (2%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGKQNFA 87
           L ++NL I  G     IG +G+GKS +M+ + GL     G V+V    + + +K K    
Sbjct: 23  LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82

Query: 88  FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
              K+G++FQ     LF   TV ++++    ++  +  +  E +   K+A+VG+      
Sbjct: 83  IRKKVGLVFQFPESQLFEE-TVLKDVAFG-PQNFGVSQEEAEALAREKLALVGISESLFE 140

Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
             PF+LSGG ++RV++A  LA++P +L LDEPT+GLDP   +E   L  KL H  G+++ 
Sbjct: 141 KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIV 199

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           ++TH ++++ +  + V V++K  ++  G   DI
Sbjct: 200 LVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232


>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
           subunit; Provisional.
          Length = 400

 Score =  107 bits (268), Expect = 3e-24
 Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGKQNFA 87
           + + +L I  GEI  ++G SG+GKS ++R +  LI    G+V + G  +  ++  +    
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103

Query: 88  FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147
              K+ ++FQ  AL   MTV +N +  + E   + A+         +  VGL    A+  
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGM-ELAGINAEERREKALDALRQVGLE-NYAHSY 161

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           P +LSGGM +RV LARALAI+PD+L +DE  S LDP+   E    L+KL+     ++  I
Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221

Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVD--SNDPWIRSYF 250
           +HDL+  +   +R+A++Q   +++ GT  +I++  +ND ++R++F
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPAND-YVRTFF 265


>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
           YejF; Provisional.
          Length = 529

 Score =  106 bits (267), Expect = 5e-24
 Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 15/242 (6%)

Query: 6   IPSQEEKILSVRNLTIE-----------LNNRIILNNINLDILRGEILGVIGSSGTGKSI 54
           +P     +L V  L +            +++ +++ NI+  +  GE LG++G SG+GKS 
Sbjct: 268 LPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKST 327

Query: 55  LMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQ--HGALFSSMTVQENIS 112
               +L LI    GE+   G+ L+    +Q      ++ V+FQ  + +L   + V + I 
Sbjct: 328 TGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIE 386

Query: 113 MPIKEHL-NLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDL 171
             ++ H   L A   E  V   +  VGL PET +  P + SGG  +R+++ARAL + P L
Sbjct: 387 EGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSL 446

Query: 172 LFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMK 231
           + LDEPTS LD     +   LL  L+    L+   I+HDL+ + + C++V V+++  +++
Sbjct: 447 IILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506

Query: 232 EG 233
           +G
Sbjct: 507 QG 508



 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 18/230 (7%)

Query: 13  ILSVRNLTIELNN----RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--- 65
           +L++ NL++        R ++N+++L I  GE L ++G SG+GKS+    IL L+P    
Sbjct: 5   LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPV 64

Query: 66  --VSGEVKVLGEHLNLAKGKQNFAFSA-KLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122
              SG+++  GE L  A  +        K+ ++FQ      S+     +   + E L+L 
Sbjct: 65  VYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP--MVSLNPLHTLEKQLYEVLSLH 122

Query: 123 ADLIEHIVHTKIAI----VGL--PPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176
             +       +I      VG+    +     P QLSGG  +RV +A AL   P+LL  DE
Sbjct: 123 RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182

Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
           PT+ LD     +  +LL +L+  L + +  ITH+L+ +    +RVAV+Q 
Sbjct: 183 PTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232


>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
           protein NodI.  This model does not recognize the highly
           divergent NodI from Azorhizobium caulinodans.
          Length = 303

 Score =  106 bits (266), Expect = 6e-24
 Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 22/234 (9%)

Query: 18  NLTIELNN-------RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           N+ I+L         ++++N+++  I RGE  G++G +G GKS + R +LG+I    G++
Sbjct: 2   NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
            VLGE +     +   A    +GV+ Q   L    TV+EN+ +    +  +    IE ++
Sbjct: 62  TVLGEPV---PSRARLA-RVAIGVVPQFDNLDPEFTVRENL-LVFGRYFGMSTREIEAVI 116

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA---- 186
            + +    L  + A++    LSGGM +R++LARAL  DP LL LDEPT+GLDP A     
Sbjct: 117 PSLLEFARLESK-ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
           E    LL     + G ++ + TH +      C+R+ V++    + EG    ++D
Sbjct: 176 ERLRSLL-----ARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224


>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 255

 Score =  106 bits (267), Expect = 6e-24
 Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 28/258 (10%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           + +LSV  L +     + +NN+NL++   EI+ +IG +G GK+ +   + G      G +
Sbjct: 3   QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
            + G+H+    G Q     A++GV+  FQH  LF  MTV EN  + + +H  L   L   
Sbjct: 63  LLRGQHIEGLPGHQ----IARMGVVRTFQHVRLFREMTVIEN--LLVAQHQQLKTGLFSG 116

Query: 129 IVHTK----------------IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLL 172
           ++ T                 +  VGL  E AN     L+ G  +R+ +AR +   P++L
Sbjct: 117 LLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175

Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232
            LDEP +GL+P   +E D+L+ +LR+   ++V +I HD+  ++   +R+ V+ +   +  
Sbjct: 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235

Query: 233 GTISDIVDSNDP-WIRSY 249
           GT  +I   N+P  I++Y
Sbjct: 236 GTPEEI--RNNPDVIKAY 251


>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 283

 Score =  106 bits (266), Expect = 6e-24
 Identities = 66/213 (30%), Positives = 120/213 (56%), Gaps = 8/213 (3%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNL-AKGKQNFA 87
           L  IN++I +GE+  ++G +G GKS L + + G++   SG +   G+ ++   KG     
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81

Query: 88  FSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
            S  +G++FQ     LFS+ +V +++S     +L LP D +   V   +   G+     +
Sbjct: 82  ES--VGMVFQDPDNQLFSA-SVYQDVSFGAV-NLKLPEDEVRKRVDNALKRTGIEH-LKD 136

Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
                LS G  KRV++A  L ++P +L LDEPT+GLDP+   E  KLL++++  LGL++ 
Sbjct: 137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTII 196

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           + THD++ +   C+ V V+++  ++ +G   ++
Sbjct: 197 IATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229


>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 257

 Score =  106 bits (265), Expect = 7e-24
 Identities = 70/239 (29%), Positives = 134/239 (56%), Gaps = 12/239 (5%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           E + ++  L + +N++ IL +I + I    I G++G SG+GKS L++ +  LI     ++
Sbjct: 8   EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI 67

Query: 71  KVLGEHLNLAKGKQNFAFSA-----KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125
           KV G+ L    GK  F   A     ++G++FQ    F  +++ +NI+ P+K H       
Sbjct: 68  KVDGKVLYF--GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKRE 125

Query: 126 IEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           I+ IV   +  VGL  E  + +     QLSGG  +R+++ARALA+ P +L +DEPTS +D
Sbjct: 126 IKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
            + ++  +KL+ +L++   +++ +++H+   +    + VA +    +++ G+ ++I  S
Sbjct: 186 IVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242


>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score =  105 bits (264), Expect = 1e-23
 Identities = 67/214 (31%), Positives = 127/214 (59%), Gaps = 8/214 (3%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L+N+N++I  GE +G+IG +G+GKS L++ + GL+   SG++ + G  +++   K   + 
Sbjct: 23  LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG--VDITDKKVKLSD 80

Query: 89  -SAKLGVLFQHG--ALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET-A 144
              K+G++FQ+    LF   T++++I+     +L L  + IE+ V   + IVGL  E   
Sbjct: 81  IRKKVGLVFQYPEYQLFEE-TIEKDIAFGPI-NLGLSEEEIENRVKRAMNIVGLDYEDYK 138

Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204
           +  PF+LSGG  +RV++A  +A++P +L LDEPT+GLDP   +E    + +L     +++
Sbjct: 139 DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI 198

Query: 205 YMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
            +++H + ++    +R+ V+ K     +GT  ++
Sbjct: 199 ILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232


>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
           Reviewed.
          Length = 240

 Score =  105 bits (264), Expect = 1e-23
 Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 17  RNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEH 76
           +N++       +L+NI+L+I +GE++ +IG SG+GKS L+R I  L    SG++ V G  
Sbjct: 5   KNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK 64

Query: 77  LNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM-PIKEHLNLPADLIEHIVHTKIA 135
           +N  K  +      + G++FQ   LF  +T  EN+   P++       +  E      +A
Sbjct: 65  VNDPKVDER-LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEE-AEKQARELLA 122

Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195
            VGL  E A+  P +LSGG  +RV++ARALA+ P L+  DEPTS LDP    E  K++  
Sbjct: 123 KVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181

Query: 196 LRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
           L    G+++ ++TH++       +R+  I K  I ++G    ++ 
Sbjct: 182 LAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225


>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
           transporter, lactococcin 972 group.  A gene pair with a
           fairly wide distribution consists of a polypeptide
           related to the lactococcin 972 (see TIGR01653) and
           multiple-membrane-spanning putative immunity protein
           (see TIGR01654). This model represents a small clade
           within the ABC transporters that regularly are found
           adjacent to these bacteriocin system gene pairs and are
           likely serve as export proteins.
          Length = 206

 Score =  104 bits (262), Expect = 2e-23
 Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 7/208 (3%)

Query: 16  VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV-SGEVKVLG 74
           ++N++ +  ++IIL+++NL I +G++  +IG SG+GKS L+  I+GL+ +  SG+V + G
Sbjct: 1   LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNG 59

Query: 75  -EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
            E   L   K +     KLG LFQ+ AL  + TV+EN+ + +K       +  E      
Sbjct: 60  KETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA- 118

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           +  VGL         ++LSGG  +RV+LARA+  DP L+  DEPT  LDP   +E   LL
Sbjct: 119 LEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLL 177

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRV 221
           ++L    G ++ ++THD   +    +RV
Sbjct: 178 LELNDE-GKTIIIVTHDP-EVAKQADRV 203


>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
           Provisional.
          Length = 340

 Score =  103 bits (258), Expect = 6e-23
 Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 15/220 (6%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84
           ++ ++N ++  +  GE  G++G +G GKS + R ILG+    +G++ VLG  +      +
Sbjct: 53  DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP----AR 108

Query: 85  NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144
                A++GV+ Q   L    TV+EN+ +    +  +    IE ++ + +    L  + A
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENL-LVFGRYFGMSTREIEAVIPSLLEFARLESK-A 166

Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI--KLRHSL-- 200
           +     LSGGM +R++LARAL  DP LL LDEPT+GLDP A     + LI  +LR  L  
Sbjct: 167 DARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA-----RHLIWERLRSLLAR 221

Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
           G ++ + TH +      C+R+ V++    + EG    ++D
Sbjct: 222 GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261


>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 260

 Score =  102 bits (256), Expect = 1e-22
 Identities = 73/215 (33%), Positives = 117/215 (54%), Gaps = 15/215 (6%)

Query: 6   IPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGL 62
           + +   KI  VRNL         L NINLDI + ++   IG SG GKS L+R    +  L
Sbjct: 7   VATAPSKI-QVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL 65

Query: 63  IP--RVSGEVKVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHL 119
            P  R  GE+ + GE  N+   KQ+ A   AK+G++FQ    F  M++ +NI+  ++   
Sbjct: 66  YPEQRAEGEILLDGE--NILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE 122

Query: 120 NLP-ADLIEHIVH--TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176
            L  A++ E +    TK A+     +  +   + LSGG  +R+ +AR +AI P++L LDE
Sbjct: 123 KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDE 182

Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           P S LDPI+    ++L+ +L+     +V ++TH++
Sbjct: 183 PCSALDPISTGRIEELITELKQD--YTVVIVTHNM 215


>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
           subunit; Provisional.
          Length = 257

 Score =  102 bits (255), Expect = 1e-22
 Identities = 72/233 (30%), Positives = 115/233 (49%), Gaps = 11/233 (4%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           E  L+V +L        +L  ++L    G+++ +IGSSG+GKS  +R I  L     G +
Sbjct: 3   ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI 62

Query: 71  KVLGEHLNLAKG----------KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120
            V G+ +NL +            Q      +L ++FQH  L+S MTV EN+     + L 
Sbjct: 63  VVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 122

Query: 121 LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
           L            +A VG+        P  LSGG  +RVS+ARALA++P++L  DEPTS 
Sbjct: 123 LSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSA 182

Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
           LDP    E  +++ +L    G ++ ++TH++       + V  + +  I +EG
Sbjct: 183 LDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234


>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
            Members of this family are the PhnK protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated complex. This protein (PhnK) and the
           adjacent-encoded PhnL resemble transporter ATP-binding
           proteins but are suggested, based on mutatgenesis
           studies, to be part of this complex rather than part of
           a transporter per se.
          Length = 253

 Score =  101 bits (253), Expect = 2e-22
 Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 14/244 (5%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           + +L V  L+          +++ D+  GE+LG++G SG+GKS L+  + G +    G  
Sbjct: 1   KPLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA 60

Query: 71  K------VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124
                     E   L++ ++      + G + Q+      M V    +  I E L     
Sbjct: 61  TYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGAN--IGERLMAIGA 118

Query: 125 ----LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
                I    H  +  V + P   + +P   SGGM +R+ +AR L   P L+F+DEPT G
Sbjct: 119 RHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGG 178

Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
           LD         LL  L   LGL+V ++THDL        R+ V+Q+  +++ G    ++D
Sbjct: 179 LDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238

Query: 241 SNDP 244
             DP
Sbjct: 239 --DP 240


>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
          Length = 306

 Score =  101 bits (253), Expect = 2e-22
 Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 15/235 (6%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
              +  RN+     ++++++ ++  + RGE  G++G +G GK+  +R +LGL    +G +
Sbjct: 5   VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
            + GE +     +   A   ++GV+ Q   L    TV+EN+ +    +  L A     +V
Sbjct: 65  SLCGEPV---PSRARHA-RQRVGVVPQFDNLDPDFTVRENLLV-FGRYFGLSAAAARALV 119

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190
              +    L    A+    +LSGGM +R++LARAL  DPD+L LDEPT+GLDP A     
Sbjct: 120 PPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA----- 173

Query: 191 KLLI--KLRHSL--GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           + L+  +LR  L  G ++ + TH +      C+R+ VI++   + EG    +++S
Sbjct: 174 RHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228


>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 268

 Score =  100 bits (251), Expect = 3e-22
 Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 10/224 (4%)

Query: 6   IPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GL 62
            P  +E IL V++L+I    +  +N+I++DI +  +  +IG SG GKS  +R I     L
Sbjct: 14  FPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL 73

Query: 63  IPRVSGEVKVLGEHLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121
           IP    E ++L E LN+     N      ++G++FQ    F   ++  NI+  +K     
Sbjct: 74  IPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGER 132

Query: 122 PADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
              +++ IV   +    L  E  + +      LSGG  +R+ +AR LA+ P +L LDEP 
Sbjct: 133 RKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVA 222
           S LDPI+  + ++L+ +L+     S+ ++TH++   +   +R A
Sbjct: 193 SALDPISNAKIEELITELKEE--YSIIIVTHNMQQALRVSDRTA 234


>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
           Provisional.
          Length = 623

 Score =  100 bits (251), Expect = 3e-22
 Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 13/236 (5%)

Query: 11  EKILSVRNLTIE------LNNRII-----LNNINLDILRGEILGVIGSSGTGKSILMRGI 59
           E IL VRNL         L NR+      +  ++ D+  GE L ++G SG+GKS   R +
Sbjct: 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRAL 370

Query: 60  LGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQ--HGALFSSMTVQENISMPIKE 117
           L L+    GE+   G+ ++     +  A    +  +FQ  + +L    TV ++I  P++ 
Sbjct: 371 LRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430

Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177
           H  LP       V   +  VGL PE A   P + SGG  +R+ +ARALA++P ++  DE 
Sbjct: 431 HGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEA 490

Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
            S LD     +   LL+ L+   G++   I+HD+  +    +RVAV+    I++ G
Sbjct: 491 VSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546



 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 25/251 (9%)

Query: 10  EEKILSVRNLTI----ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR 65
              +L+V NL I    E      + N++  + RGE L ++G SG+GKS+    ++ L+ +
Sbjct: 9   ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 68

Query: 66  VSGEVKVLGEHLNLAKGKQNFAFS------------AKLGVLFQH--GALFSSMTVQENI 111
             G V+   + L   + +Q    S            A + ++FQ    +L    TV E I
Sbjct: 69  AGGLVQC-DKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI 127

Query: 112 SMPIKEHLNLPADLIEHIVHTK--IAIVGLPPETANL--MPFQLSGGMIKRVSLARALAI 167
           +  I+ H     +  E +V  K  +  V +P     L   P QLSGGM +RV +A AL+ 
Sbjct: 128 AESIRLHQGASRE--EAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 185

Query: 168 DPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKK 227
            P +L  DEPT+ LD     +  +L+  L+  + + V  ITHD+  +    +RV V+ + 
Sbjct: 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245

Query: 228 GIMKEGTISDI 238
             ++ G++  I
Sbjct: 246 EAVETGSVEQI 256


>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
           YbbA; Provisional.
          Length = 228

 Score =  100 bits (251), Expect = 4e-22
 Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 22/222 (9%)

Query: 11  EKILSVRNLTIEL----NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66
           E I+ V +L   +    +   IL  + L + RGE + +IG SG+GKS L+  + GL    
Sbjct: 4   ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS 63

Query: 67  SGEVKVLGEHLNLAKGKQNFAFSAK-LGVLFQHGALFSSMTVQENISMPI-------KEH 118
           SGEV ++G+ L+    +      AK +G +FQ   L  ++   EN+ +P        ++ 
Sbjct: 64  SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS 123

Query: 119 LNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
            N    L+E +        GL  +  + +P QLSGG  +RV+LARA    PD+LF DEPT
Sbjct: 124 RNGAKALLEQL--------GLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNR 220
             LD    ++   LL  L    G ++ ++THD   L + C+R
Sbjct: 175 GNLDRQTGDKIADLLFSLNREHGTTLILVTHD-LQLAARCDR 215


>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score = 99.8 bits (249), Expect = 6e-22
 Identities = 70/229 (30%), Positives = 127/229 (55%), Gaps = 16/229 (6%)

Query: 11  EKILSVRNLTIELN---NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
             I+ V+NLT +      +  LN+++  + +GE L +IG +G+GKS  +R I GL+   S
Sbjct: 2   SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES 61

Query: 68  GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLI 126
           G++ + G+ L     +  +    K+G++FQ+    F   TV+++++  + E+  +P + +
Sbjct: 62  GQIIIDGDLLTE---ENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL-ENKGIPHEEM 117

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
           +  V+  + +VG+  +     P +LSGG  +RV++A A+A+ P ++ LDE TS LDP   
Sbjct: 118 KERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235
            E  K +  +R    ++V  ITHDL+  ++  +RV V      MK G +
Sbjct: 177 LELIKTIKGIRDDYQMTVISITHDLDE-VALSDRVLV------MKNGQV 218


>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 286

 Score = 99.1 bits (247), Expect = 1e-21
 Identities = 54/209 (25%), Positives = 115/209 (55%), Gaps = 5/209 (2%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG-EHLNLAKGKQNFA 87
           ++++N +  +G+   ++G +G+GKS L++ I  L+   +G V V      +  K K    
Sbjct: 23  IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82

Query: 88  FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
              ++G++FQ     LF     +E I  P  ++  +  D +++  H  +  +G   +  +
Sbjct: 83  VRKRIGMVFQFPESQLFEDTVEREIIFGP--KNFKMNLDEVKNYAHRLLMDLGFSRDVMS 140

Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
             PFQ+SGG ++++++   LA++PD++ LDEPT+GLDP +  +  +LL  L+     ++ 
Sbjct: 141 QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTII 200

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGT 234
           +++HD+N +    + V V+++  I+ + +
Sbjct: 201 LVSHDMNEVARYADEVIVMKEGSIVSQTS 229


>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 99.1 bits (247), Expect = 1e-21
 Identities = 55/206 (26%), Positives = 107/206 (51%), Gaps = 14/206 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI-----PRVSG 68
           +   NL +   +  ++  ++L I +  +  ++G SG GKS L+R    L+      RV G
Sbjct: 5   IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG 64

Query: 69  EVKVLGEHLNLAKGKQN-FAFSAKLGVLFQHGALFSSMTVQENISMPIK-EHLNLPADLI 126
           EV++ G   N+     +      ++G++FQ+   F  +T+ +N+++ +K   L      +
Sbjct: 65  EVRLFGR--NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122

Query: 127 EHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
           +  V   +    L  E  + +   P  LSGG  +R+ +ARALA+ P +L +DEPT+ +DP
Sbjct: 123 DERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP 182

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITH 209
           +   + ++LL +L+     ++ ++TH
Sbjct: 183 VGTAKIEELLFELKKE--YTIVLVTH 206


>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
           ATP-binding subunit.  This protein family is the
           ATP-binding cassette subunit of binding
           protein-dependent ABC transporter complex that strictly
           co-occurs with TIGR03769. TIGRFAMs model TIGR03769
           describes a protein domain that occurs singly or as one
           of up to three repeats in proteins of a number of
           Actinobacteria, including Propionibacterium acnes
           KPA171202. The TIGR03769 domain occurs both in an
           adjacent gene for the substrate-binding protein and in
           additional (often nearby) proteins, often with
           LPXTG-like sortase recognition signals. Homologous
           ATP-binding subunits outside the scope of this family
           include manganese transporter MntA in Synechocystis sp.
           PCC 6803 and chelated iron transporter subunits. The
           function of this transporter complex is unknown.
          Length = 223

 Score = 98.4 bits (245), Expect = 2e-21
 Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 21/219 (9%)

Query: 38  RGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-------HLNLAKGKQNFAFSA 90
           +GE+LG++G +G GK+ L+R ILGLIP   G VKV G        H+     +  FA+  
Sbjct: 5   KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDF 64

Query: 91  KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQ 150
            + V   H  +         +  P         D +  +  T         E A+    +
Sbjct: 65  PISV--AHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT---------ELADRPVGE 113

Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210
           LSGG  +RV +ARALA  P +L LDEP +GLD    E   +L I+L  + G ++ M THD
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTHD 172

Query: 211 LNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSY 249
           L   ++TC+RV ++  + ++ +GT   + D   PW+ ++
Sbjct: 173 LAQAMATCDRVVLLNGR-VIADGTPQQLQDP-APWMTTF 209


>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 289

 Score = 98.2 bits (244), Expect = 2e-21
 Identities = 66/216 (30%), Positives = 119/216 (55%), Gaps = 10/216 (4%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEH---LNLAKGKQN 85
           LNN +L   + ++  VIG++G+GKS +++   GLI   +G+  ++G++    NL K K+ 
Sbjct: 27  LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPANLKKIKEV 85

Query: 86  FAFSAKLGVLFQ--HGALFSSMTVQENISM-PIKEHLNLPADLIEHIVHTKIAIVGLPPE 142
                ++G++FQ     LF   T++++I+  P+  +L          V   + +V LP +
Sbjct: 86  KRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPV--NLGENKQEAYKKVPELLKLVQLPED 142

Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL 202
                PF+LSGG  +RV+LA  +A+D + L LDEPT GLDP   E+F  L  +L      
Sbjct: 143 YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK 202

Query: 203 SVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
            + M+TH+++ ++   + V V+ +  ++  G+  +I
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238


>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
           transporter ATP-binding subunit GldA.  Members of this
           protein family are exclusive to the Bacteroidetes phylum
           (previously Cytophaga-Flavobacteria-Bacteroides). GldA
           is an ABC transporter ATP-binding protein (pfam00005)
           linked to a type of rapid surface gliding motility found
           in certain Bacteroidetes, such as Flavobacterium
           johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
           abolish the gliding phenotype. Gliding motility appears
           closely linked to chitin utilization in the model
           species Flavobacterium johnsoniae. Bacteroidetes with
           members of this protein family appear to have all of the
           genes associated with gliding motility.
          Length = 301

 Score = 97.9 bits (244), Expect = 3e-21
 Identities = 77/232 (33%), Positives = 120/232 (51%), Gaps = 14/232 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + V +LT     +  L+ ++ +  +G I+G +G +G GKS  M+ I G +P  SG V+V 
Sbjct: 3   IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62

Query: 74  GEH-LNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
           GE  L   K  Q       +G L +H  L+  M V+E +   I     +   L++  V  
Sbjct: 63  GEDVLQNPKEVQRN-----IGYLPEHNPLYLDMYVREYLQF-IAGIYGMKGQLLKQRVEE 116

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            I +VGL PE    +  QLS G  +RV LA+AL  DP +L LDEPT+GLDP    E    
Sbjct: 117 MIELVGLRPEQHKKIG-QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN- 174

Query: 193 LIKLRHSLGLSVYMI--THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
           +IK   ++G    +I  TH +  + + C+RV +I K  I+ +  + ++  +N
Sbjct: 175 VIK---NIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAAN 223


>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
           Provisional.
          Length = 233

 Score = 97.6 bits (243), Expect = 3e-21
 Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 3/186 (1%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN-LAKGKQNF 86
           +L+N++  I  GE++ ++GSSG+GKS L+  + GL    SG+V   G+ ++ L+   +  
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 87  AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146
             + KLG ++Q   L    T  EN++MP+      PA+ I       +A VGL    AN 
Sbjct: 84  LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAE-INSRALEMLAAVGLE-HRANH 141

Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206
            P +LSGG  +RV++ARAL  +P L+  DEPT  LD   A+   +LL +L    G +  +
Sbjct: 142 RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLV 201

Query: 207 ITHDLN 212
           +THDL 
Sbjct: 202 VTHDLQ 207


>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 97.1 bits (241), Expect = 4e-21
 Identities = 71/236 (30%), Positives = 130/236 (55%), Gaps = 10/236 (4%)

Query: 12  KILSVRNLTIELNNRIILNNIN---LDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68
           KIL V NL  +      +N +N     I +GE + +IG +G+GKS   R I GL     G
Sbjct: 3   KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG 62

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLIE 127
           +VK+ GE L     +  +    K+G++FQ+    F   TV+++++  ++       ++I+
Sbjct: 63  KVKIDGELLT---AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK 119

Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
            +    +A+  L  +T    P +LSGG  +RV++A  +A+ P+++ LDE TS LDP   +
Sbjct: 120 RVDEALLAVNMLDFKTRE--PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
           E  +++ +++    L+V  ITHDL+   S+ +R+ V++   I+KE   S++  +++
Sbjct: 178 EIMRVIHEIKEKYQLTVLSITHDLDEAASS-DRILVMKAGEIIKEAAPSELFATSE 232


>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 241

 Score = 97.2 bits (242), Expect = 4e-21
 Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 17/190 (8%)

Query: 26  RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQN 85
           + IL +I++    G I  ++G SG GKS L++ I  LI    G + + G  +   K    
Sbjct: 16  KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI---KTIDV 72

Query: 86  FAFSAKLGVLFQHGALFSSMTVQENI----SMPIKEHLNLPADLIEHIVHTKIAIVGLPP 141
                K+G++FQ   LF   TV++NI     +  +++++         V   ++IVGL  
Sbjct: 73  IDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVD---------VEYYLSIVGLNK 122

Query: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201
           E A      LSGG  +RVS+AR LA +P++L LDEPTS LDP + E  ++L++KL++ + 
Sbjct: 123 EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN 182

Query: 202 LSVYMITHDL 211
           L+V  ITH++
Sbjct: 183 LTVIWITHNM 192


>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
           protein UrtE.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 230

 Score = 97.2 bits (243), Expect = 4e-21
 Identities = 63/237 (26%), Positives = 117/237 (49%), Gaps = 30/237 (12%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L V NL +      IL  ++L++ +GE+  V+G +G GK+ L++ ++GL+P  SG +++ 
Sbjct: 1   LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           GE +      +     A+ G+ +  Q   +F  +TV+EN+   +     LP         
Sbjct: 61  GEDITKLPPHER----ARAGIAYVPQGREIFPRLTVEENLLTGLA---ALPR------RS 107

Query: 132 TKIAIVGLPPETANLMPF----------QLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181
            KI     P E   L P            LSGG  +++++ARAL   P LL LDEPT G+
Sbjct: 108 RKI-----PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162

Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
            P   ++  +++ +LR   G+++ ++   L+      +R  V+++  ++  G   ++
Sbjct: 163 QPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219


>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 97.1 bits (242), Expect = 4e-21
 Identities = 61/210 (29%), Positives = 114/210 (54%), Gaps = 14/210 (6%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIP--R 65
              +SV++L +   +   L  INLDI   ++  +IG SG GKS  +R +     LIP  +
Sbjct: 1   MGKISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK 60

Query: 66  VSGEVKVLGEHLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124
           + GEV + G+  ++ K   +      ++G++FQ    F  M++ +N++   + H      
Sbjct: 61  IEGEVLLDGQ--DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKK 117

Query: 125 LIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181
            ++ IV   +    L  E  + +      LSGG  +R+ +ARALA++P++L +DEPTS L
Sbjct: 118 KLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSAL 177

Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           DPI+  + ++L+ +L+     ++ ++TH++
Sbjct: 178 DPISTLKIEELIQELKKD--YTIVIVTHNM 205


>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
           Provisional.
          Length = 242

 Score = 97.0 bits (242), Expect = 4e-21
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 25/222 (11%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGL--IPRVSGEVKVLGEHLNLAKG--- 82
            L +I LD  +GE L ++G SG GKS L+R +L L  +PR SG + + G H + +K    
Sbjct: 17  ALFDITLDCPQGETLVLLGPSGAGKSSLLR-VLNLLEMPR-SGTLNIAGNHFDFSKTPSD 74

Query: 83  KQNFAFSAKLGVLFQHGALFSSMTVQEN-ISMPI------KEHLNLPADLIEHIVHTKIA 135
           K        +G++FQ   L+  +TVQ+N I  P       K+     A+  + +   ++ 
Sbjct: 75  KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAE--KLLERLRLK 132

Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLI 194
                   A+  P  LSGG  +RV++ARAL ++P +L  DEPT+ LDP I A+     +I
Sbjct: 133 ------PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS--II 184

Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236
           +     G++  ++TH++     T +RV  ++   I+++G  S
Sbjct: 185 RELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226


>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 254

 Score = 97.0 bits (241), Expect = 4e-21
 Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 12/239 (5%)

Query: 8   SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
            + E I+   NL +   +   LNNIN+ IL+  I  +IG SG GKS  +R +  +   V 
Sbjct: 2   PKNEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVE 61

Query: 68  GEVKVLGEHLNLAKG--KQNF---AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122
           G +K+ G  +   K     NF       K+G++FQ    F  M++ +NIS   K H    
Sbjct: 62  G-IKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKD 119

Query: 123 ADLIEHIVHTKIAIVGLPPETA---NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179
              ++ IV   +    L  E     N     LSGG  +R+ +AR LAI+P+++ +DEPTS
Sbjct: 120 KKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179

Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
            LDPI+  + ++L+I L+ S   ++ ++TH++       +R A      I +E +  ++
Sbjct: 180 ALDPISTGKIEELIINLKES--YTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236


>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
           This model describes the ATP binding subunit of the
           multisubunit cobalt transporter in bacteria and its
           equivalents in archaea. The model is restricted to ATP
           subunit that is a part of the cobalt transporter, which
           belongs to the ABC transporter superfamily (ATP Binding
           Cassette). The model excludes ATP binding subunit that
           are associated with other transporters belonging to ABC
           transporter superfamily. This superfamily includes two
           groups, one which catalyze the uptake of small
           molecules, including ions from the external milieu and
           the other group which is engaged in the efflux of small
           molecular weight compounds and ions from within the
           cell. Energy derived from the hydrolysis of ATP drive
           the both the process of uptake and efflux.
          Length = 190

 Score = 96.0 bits (239), Expect = 8e-21
 Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 7/185 (3%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87
           +L  +N    RGE+L ++G++G GKS L+  + GL+   SG V + GE L+ ++ K    
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR-KGLLE 65

Query: 88  FSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
              ++G++FQ     LF++  V ++++     +L L    +E  V   +  VG       
Sbjct: 66  RRQRVGLVFQDPDDQLFAA-DVDQDVAFGPL-NLGLSEAEVERRVREALTAVGAS-GLRE 122

Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
                LSGG  KRV++A A+A+ PD+L LDEPT+GLDP   E+   +L +LR   G++V 
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVV 181

Query: 206 MITHD 210
           + THD
Sbjct: 182 ISTHD 186


>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
           protein; Provisional.
          Length = 241

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 66/241 (27%), Positives = 130/241 (53%), Gaps = 32/241 (13%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
            L+ +NL      R ++ +++L +  GEI+G++G +G GK+     ++G++PR +G + +
Sbjct: 3   TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62

Query: 73  LGEHLNL----AKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS--MPIKEHLNLPA--- 123
             E ++L    A+ ++       +G L Q  ++F  ++V +N+   + I++ L+      
Sbjct: 63  DDEDISLLPLHARARRG------IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED 116

Query: 124 ---DLIE--HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
              +L+E  HI H +           + M   LSGG  +RV +ARALA +P  + LDEP 
Sbjct: 117 RANELMEEFHIEHLR-----------DSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           +G+DPI+  +  +++  LR S GL V +  H++   ++ C R  ++ +  ++  GT ++I
Sbjct: 166 AGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224

Query: 239 V 239
           +
Sbjct: 225 L 225


>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 246

 Score = 95.5 bits (237), Expect = 1e-20
 Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 13/206 (6%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---IPRVSGE 69
           I    NL +    +  L +IN+ I + +I  +IG+SG GKS  +R    +   I ++ G 
Sbjct: 2   IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61

Query: 70  VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP-ADLIEH 128
           V++ G+ +   K +   A    +G++FQ   +F   ++ ENIS   K H  +   D  E 
Sbjct: 62  VEIEGKDV---KNQDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEA 117

Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
           +V   +  VGL  E  + +      LSGG  +R+ +ARALAI P LL LDEPTS LDPI+
Sbjct: 118 LVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPIS 177

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211
           +   ++LL +L H+  LS+ M+TH++
Sbjct: 178 SGVIEELLKELSHN--LSMIMVTHNM 201


>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
           Provisional.
          Length = 330

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 73/244 (29%), Positives = 121/244 (49%), Gaps = 14/244 (5%)

Query: 8   SQEEKILSVRNLTIELN----NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63
            Q + +L V++L +  +    +   +N++N  +  GE LG++G SG+GKS     ++GL+
Sbjct: 7   QQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL 66

Query: 64  P---RVSGEVKVLG-EHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKE 117
               R+ G     G E LNL + + N   + ++ ++FQ    +L   M V E +   +  
Sbjct: 67  AANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 126

Query: 118 HLNL-PADLIEHIVHTKIAIVGLPP--ETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174
           H  +  A+  E  V    A V +P   +   + P + SGGM +RV +A AL   P LL  
Sbjct: 127 HKGMSKAEAFEESVRMLDA-VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 185

Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
           DEPT+ LD     +   LL +L+     ++ MITHDL  +   C++V V+     M+ G 
Sbjct: 186 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245

Query: 235 ISDI 238
             D+
Sbjct: 246 ARDV 249


>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 95.1 bits (236), Expect = 2e-20
 Identities = 72/254 (28%), Positives = 131/254 (51%), Gaps = 16/254 (6%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---IP--R 65
           E I+S +++ +   N   L+ I+LD    E+  +IG SG GKS  +R +  +   I   +
Sbjct: 2   ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61

Query: 66  VSGEVKVLGEHLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124
           ++GE+K  G+  N+   K +      ++G++FQ    F   +V +N++  +K       +
Sbjct: 62  ITGEIKFEGQ--NIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKE 118

Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181
           LI+  V   +    +  ET + +       SGG  +R+ +ARALA+ P ++ LDEPTS L
Sbjct: 119 LIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSAL 178

Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           DPI++ E ++ L++L+H    +  M+TH+L       ++ A +    +++ G   ++  +
Sbjct: 179 DPISSSEIEETLMELKHQ--YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236

Query: 242 NDPWIRS-YFN-RF 253
               I S Y N RF
Sbjct: 237 PKKQITSDYLNGRF 250


>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
           Provisional.
          Length = 257

 Score = 95.1 bits (237), Expect = 2e-20
 Identities = 69/216 (31%), Positives = 109/216 (50%), Gaps = 16/216 (7%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L +  ++     R +LN ++L I  G+ + V+G SG GKS L+R + GL    +GE+  L
Sbjct: 13  LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL--L 70

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
                LA+ +++        ++FQ   L     V +N+ + +K      A          
Sbjct: 71  AGTAPLAEARED------TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA-------LQA 117

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           +A VGL  + AN  P  LSGG  +RV+LARAL   P LL LDEP   LD +   E   L+
Sbjct: 118 LAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229
             L    G +V ++THD++  ++  +RV +I++  I
Sbjct: 177 ESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212


>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 276

 Score = 94.8 bits (235), Expect = 2e-20
 Identities = 62/235 (26%), Positives = 121/235 (51%), Gaps = 11/235 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           ++  NLT+    + +L+ +++      +  ++G +G+GK+  +R +  +  +VSG  +  
Sbjct: 22  MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-YRYS 80

Query: 74  GEHLNLAKGKQNF----AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI 129
           G+ L   +   N+     F  ++G+LFQ    F  M++ +N+   ++ H  +P      +
Sbjct: 81  GDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGV 139

Query: 130 VHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
              ++  VGL     + +   PF+LSGG  + + LAR LA++P++L LDEPTS LDP   
Sbjct: 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           E+ ++ +  L     L+V ++TH+L       +R A+     +++EG    +  S
Sbjct: 200 EKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252


>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
           transporter, HlyB family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 694

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 71/218 (32%), Positives = 115/218 (52%), Gaps = 26/218 (11%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87
           +L+N+NLDI  GE +G++G SG+GKS L + +  L     G+V V G  L +A       
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA---W 528

Query: 88  FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH-TKIA-----IVGLPP 141
              ++GV+ Q   LFS  ++++NI+      L  P    EH++H  K+A     I  LP 
Sbjct: 529 LRRQMGVVLQENVLFSR-SIRDNIA------LCNPGAPFEHVIHAAKLAGAHDFISELPQ 581

Query: 142 ETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198
                +  +   LSGG  +R+++ARAL  +P +L  DE TS LD     E + L+++   
Sbjct: 582 GYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD----YESEALIMRNMR 637

Query: 199 SL--GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
            +  G +V +I H L+  +  C+R+ V++K  I + G 
Sbjct: 638 EICRGRTVIIIAHRLST-VRACDRIIVLEKGQIAESGR 674


>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
           protein YecC; Provisional.
          Length = 250

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 24/252 (9%)

Query: 16  VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75
           V+NL  + + + +L+ I+L++  GE++ +IG SG+GK+ L+R I  L    +G ++V   
Sbjct: 6   VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDI 65

Query: 76  HLNLAK---GKQNF--AFSAKLGVLFQHGALFSSMTVQEN-ISMPI---KEHLNLPADLI 126
            ++ A+    ++         +G +FQ+  LF   TV EN I  P+    E    P +  
Sbjct: 66  TIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGE----PKEEA 121

Query: 127 EHIVHTKIAIVGLP-PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
                  +A VGL   ET+   P +LSGG  +RV++ARALA+ P+++  DEPTS LDP  
Sbjct: 122 TARARELLAKVGLAGKETS--YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP-- 177

Query: 186 AEEFDKLLIKLRHSLG---LSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI-VDS 241
            E   ++L  +R  L     ++ ++TH+++      +R   + +  I+++G    +  D 
Sbjct: 178 -ELVGEVLNTIR-QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235

Query: 242 NDPWIRSYFNRF 253
             P  R +  +F
Sbjct: 236 QQPRTRQFLEKF 247


>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 271

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 61/214 (28%), Positives = 111/214 (51%), Gaps = 11/214 (5%)

Query: 6   IPSQEEKIL-SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LG 61
           I +  +K++   +NL +       L NINLDI   E+  +IG SG GKS  ++ +   + 
Sbjct: 16  IETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75

Query: 62  LIPRVSGEVKVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120
           L+P V    K+L    N+     +       +G++FQ    F   ++ +N++   K H  
Sbjct: 76  LVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGI 134

Query: 121 LPADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEP 177
                ++ IV   +    +  E  + +    + LSGG  +R+ +AR LAI+PD++ +DEP
Sbjct: 135 KDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEP 194

Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           TS LDPI+  + ++L+ +L+     S+ ++TH++
Sbjct: 195 TSALDPISTLKVEELVQELKKD--YSIIIVTHNM 226


>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 15/234 (6%)

Query: 15  SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIP--RVSGE 69
           SV+NL +   ++ IL +INLDI + E+   IG SG GKS  +R    +   +P  +V GE
Sbjct: 7   SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE 66

Query: 70  VKVLGEHLNLAKGKQNFAF-SAKLGVLFQHGALFSSMTVQENISMPIKEH-LNLPADLIE 127
           + +  + +++     N     AK+G++FQ    F   ++ +N++   K H L      ++
Sbjct: 67  LDI--DGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLD 123

Query: 128 HIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
            IV   +  VGL  E  + +    F+LSGG  +R+ +ARA+A+ P +L +DEP S LDP+
Sbjct: 124 EIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           A    + L+ +L+     ++ ++TH +       +RVA  Q   I++  T  +I
Sbjct: 184 ATNVIENLIQELK--KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235


>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
           ABC transporter, ATP-binding subunit.  Model TIGR03731
           represents the family of all lantibiotics related to
           gallidermin, including epidermin, mutatin, and nisin.
           This protein family describes the ATP-binding subunit of
           a gallidermin/epidermin class lantibiotic protection
           transporter. It is largely restricted to
           gallidermin-family lantibiotic biosynthesis and export
           cassettes, but also occurs in orphan transporter
           cassettes in species that lack candidate lantibiotic
           precursor and synthetase genes.
          Length = 223

 Score = 93.6 bits (233), Expect = 5e-20
 Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L  +NL+     +  +NNI+L + +  + G++G +G GKS L++ I G++   SGE+   
Sbjct: 1   LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD 60

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G                K+G L +   L+ ++T +EN+ +     L LP   I+ +++  
Sbjct: 61  GHPWTRKDLH-------KIGSLIESPPLYENLTARENLKVHTT-LLGLPDSRIDEVLN-- 110

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
             IV L   T      Q S GM +R+ +A AL   P LL LDEPT+GLDPI  +E  + L
Sbjct: 111 --IVDL-TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE-L 166

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236
           I+     G++V + +H L+ +    + + +I +  +  +G I+
Sbjct: 167 IRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209


>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
           Unfortunately, the gene symbol nomenclature adopted
           based on this operon in B. subtilis assigns cydC to the
           third gene in the operon where this gene is actually
           homologous to the E. coli cydD gene. We have chosen to
           name all homologs in this family in accordance with the
           precedence of publication of the E. coli name, CydD.
          Length = 529

 Score = 93.1 bits (232), Expect = 7e-20
 Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 18/219 (8%)

Query: 14  LSVRNLTIELNNR--IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           L    L++    R    L  ++  +  GE + ++G SG GKS L+  +LG +    G + 
Sbjct: 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           V G  L  A       +  ++  + QH  LF+  T+ ENI +   +        I   + 
Sbjct: 381 VNGVPLADADADS---WRDQIAWVPQHPFLFAG-TIAENIRLARPD---ASDAEIRRALE 433

Query: 132 TKIA---IVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
                  +  LP     L+      LSGG  +R++LARA   D  LL LDEPT+ LD   
Sbjct: 434 RAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224
                + L  L    G +V ++TH L  L    +R+ V+
Sbjct: 494 EALVTEALRALAQ--GRTVLLVTHRL-ALAERADRIVVL 529


>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
           Provisional.
          Length = 258

 Score = 92.3 bits (230), Expect = 1e-19
 Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 32/254 (12%)

Query: 10  EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
           ++ +LSVR LT     R    +++ D+  GE+LG++G SG+GK+ L+  +   +   +GE
Sbjct: 3   DQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62

Query: 70  V------KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQE--NIS---MPIKE- 117
           V        L +   L++ ++      + G + QH      M V    NI    M +   
Sbjct: 63  VHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR 122

Query: 118 HL-NLPA---DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLF 173
           H  ++ A   D +E         V +     + +P   SGGM +R+ +AR L   P L+F
Sbjct: 123 HYGDIRATAGDWLER--------VEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVF 174

Query: 174 LDEPTSGLD-PIAAEEFDKLLIKLRHSLGLSVYMITHDLN--NLISTCNRVAVIQKKGIM 230
           +DEPT GLD  + A   D LL  L   LGL+V ++THDL    L++  +R+ V+++  ++
Sbjct: 175 MDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLA--HRLLVMKQGRVV 231

Query: 231 KEGTISDIVDSNDP 244
           + G    ++D  DP
Sbjct: 232 ESGLTDQVLD--DP 243


>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit.  The
           gene pair cydCD encodes an ABC-family transporter in
           which each gene contains an N-terminal membrane-spanning
           domain (pfam00664) and a C-terminal ATP-binding domain
           (pfam00005). In E. coli these genes were discovered as
           mutants which caused the terminal heme-copper oxidase
           complex cytochrome bd to fail to assemble. Recent work
           has shown that the transporter is involved in export of
           redox-active thiol compounds such as cysteine and
           glutathione. The linkage to assembly of the cytochrome
           bd complex is further supported by the conserved operon
           structure found outside the gammaproteobacteria
           (cydABCD) containing both the transporter and oxidase
           genes components. The genes used as the seed members for
           this model are all either found in the
           gammproteobacterial context or the CydABCD context. All
           members of this family scoring above trusted at the time
           of its creation were from genomes which encode a
           cytochrome bd complex.
          Length = 529

 Score = 92.4 bits (230), Expect = 1e-19
 Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 32/201 (15%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84
           +  +L+ ++LD+  GE + ++G SG+GKS L+  + GL+  + GEV + G  ++  +   
Sbjct: 347 SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQD-- 404

Query: 85  NFAFSAKLGVLFQHGALFSSMTVQENISMPIKE-------------HLNLPADLIEHIVH 131
                 ++ V  Q   LF + TV++N+ +   +              L      +   + 
Sbjct: 405 --ELRRRISVFAQDAHLFDT-TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLD 461

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
           T +       E        LSGG  +R++LARAL  D  +L LDEPT  LD     E   
Sbjct: 462 TVLG------EGGAR----LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESE--- 508

Query: 192 LLIKLRHSL-GLSVYMITHDL 211
           LL  L  +L G +V +ITH L
Sbjct: 509 LLEDLLAALSGKTVVVITHHL 529


>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 320

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 25/249 (10%)

Query: 7   PSQEEKILSVRNLTIELNNR-----IILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61
           P  ++ IL V+NL    + +     + LNNI+    + +I  +IG+SG+GKS L+    G
Sbjct: 15  PLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74

Query: 62  LIPRVSGEVKV----LGEHLN--------LAKGKQNFAFSAKL-GVLFQ--HGALFSSMT 106
           LI    G ++V    +G+  N         +K  +NF    +   ++FQ     LF   T
Sbjct: 75  LIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-T 133

Query: 107 VQENISM-PIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARAL 165
           ++++I   P+   L +     + +    +  +GL        PF LSGG  +RV++A  L
Sbjct: 134 IEKDIMFGPVA--LGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGIL 191

Query: 166 AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225
           AI P++L  DEPT+GLDP    E  +L++  + +   +V++ITH + +++   + V V+ 
Sbjct: 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMD 250

Query: 226 KKGIMKEGT 234
           K  I+K GT
Sbjct: 251 KGKILKTGT 259


>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 92.0 bits (228), Expect = 1e-19
 Identities = 75/255 (29%), Positives = 127/255 (49%), Gaps = 19/255 (7%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + V++L+   N    +  I++DI R ++  +IG SG GKS  ++  L  I  + G VKV 
Sbjct: 8   IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGPVKVE 66

Query: 74  GE----HLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           G       N+   + N      ++G++FQ    F  M++ EN++  ++    LP   ++ 
Sbjct: 67  GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDE 125

Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
           IV + +    L  E  + +      LSGG  +R+ +ARALAI P +L +DEP S LDPIA
Sbjct: 126 IVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI----QKKGIMKEGTISDIVDS 241
             + ++L+  LR  L +++  +TH++       +  A       + G M E  ++  + S
Sbjct: 186 TMKVEELIHSLRSELTIAI--VTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243

Query: 242 N--DPWIRSYFN-RF 253
           N  D   R Y + RF
Sbjct: 244 NPLDSRTRDYVSGRF 258


>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 329

 Score = 91.3 bits (226), Expect = 2e-19
 Identities = 61/212 (28%), Positives = 112/212 (52%), Gaps = 14/212 (6%)

Query: 10  EEKILSVRNLTIELNNRI--ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
              +  +RN      NR   +L+++NLDI R ++   IG SG GKS  +R +  L   + 
Sbjct: 77  HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE 136

Query: 68  G-----EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122
           G     E+  LG +   +K   +     ++G++FQ    F  M++ +N++   + +    
Sbjct: 137 GTSHEGEIYFLGTNTR-SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGIND 194

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179
             ++E IV   +    L  E  + +      LSGG  +R+ +ARA+A++P++L +DEPTS
Sbjct: 195 RKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254

Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
            LDPIA  + ++L+++L+     S+ ++TH +
Sbjct: 255 ALDPIATAKIEELILELKKK--YSIIIVTHSM 284


>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 66/235 (28%), Positives = 130/235 (55%), Gaps = 11/235 (4%)

Query: 11  EKILSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68
             ++ V N++    N     L N++ +I  GE + ++G +G+GKS + + + GL+   SG
Sbjct: 5   SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG 64

Query: 69  EVKVLGEHLNLAKGKQNFAF-SAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLI 126
           E+K+ G  ++    K+N      K+G++FQ+    F   TV+++I+  + E+  +P   +
Sbjct: 65  EIKIDGITIS----KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL-ENKKVPPKKM 119

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
           + I+      VG+  +  +  P  LSGG  +RV++A  LA++P+++  DE TS LDP   
Sbjct: 120 KDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
            E  K+++ LR +   ++  ITHD++  I   ++V V  +  ++ +G   +I+++
Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNN 232


>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 65/220 (29%), Positives = 117/220 (53%), Gaps = 15/220 (6%)

Query: 1   MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI- 59
           + + N  S E+  L VRNL +   ++  L +I++ I +  +   IG SG GKS L+R   
Sbjct: 14  LDVLN-LSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFN 72

Query: 60  ----LGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPI 115
               L    R+ GE+++ G+++   K         ++G++FQ    F   ++ EN+   +
Sbjct: 73  RMNDLVDNCRIEGEIRLDGQNIY-DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGL 130

Query: 116 KEH-LNLPADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDL 171
           +   +N    L E  V   +    L  E  + +    F LSGG  +R+ +ARA+AI+P++
Sbjct: 131 RLQGINNRRVLDE-AVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEV 189

Query: 172 LFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           L LDEPTS LDPI+  + ++L+ +L+     ++ ++TH++
Sbjct: 190 LLLDEPTSALDPISTLKIEELITELKSK--YTIVIVTHNM 227


>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
           Provisional.
          Length = 351

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 63/237 (26%), Positives = 121/237 (51%), Gaps = 19/237 (8%)

Query: 8   SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
             ++  + ++N+T    +  +++N+NL I +G ++ ++G SG GK+ ++R + GL     
Sbjct: 1   MTQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60

Query: 68  GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127
           G++ + GE +     +Q       + ++FQ  ALF  M++ EN+   +K  L +P +  +
Sbjct: 61  GQIFIDGEDVTHRSIQQR-----DICMVFQSYALFPHMSLGENVGYGLK-MLGVPKEERK 114

Query: 128 HIVHTKIAIVGLPPETANLMPF------QLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181
             V   + +V       +L  F      Q+SGG  +RV+LARAL + P +L  DEP S L
Sbjct: 115 QRVKEALELV-------DLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNL 167

Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           D        + + +L+    ++   +THD +   +  + V V+ K  IM+ G+  ++
Sbjct: 168 DANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224


>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
           transporter, PrtD family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 544

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 80/242 (33%), Positives = 114/242 (47%), Gaps = 37/242 (15%)

Query: 11  EKILSVRNLTI--ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68
           E  LSV N+TI      +  L  I+  +  GE L +IG SG+GKS L R I+G+ P  SG
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
            V++ G  L   +  +   F   +G L Q   LF   TV ENI+          AD  + 
Sbjct: 374 SVRLDGADLK--QWDRET-FGKHIGYLPQDVELFPG-TVAENIA-----RFGENADPEKI 424

Query: 129 IVHTKIA-----IVGLP--------PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLD 175
           I   K+A     I+ LP        P  A      LSGG  +R++LARAL  DP L+ LD
Sbjct: 425 IEAAKLAGVHELILRLPDGYDTVIGPGGAT-----LSGGQRQRIALARALYGDPKLVVLD 479

Query: 176 EPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235
           EP S LD    +     +  L+   G++V +ITH  + L         + K  ++++G I
Sbjct: 480 EPNSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLL-------GCVDKILVLQDGRI 531

Query: 236 SD 237
           + 
Sbjct: 532 AR 533


>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 12/209 (5%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI--LG-LIPRVS 67
           E IL V +L++  N +  LN+++LD    EI  +IG SG+GKS L+R I  +  L P V+
Sbjct: 3   EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62

Query: 68  --GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125
             G +   G ++  +          ++G++FQ    F  M++ EN+   ++        +
Sbjct: 63  ITGSIVYNGHNI-YSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQV 120

Query: 126 IEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           ++  V   +    +  E  + +      LSGG  +RV +AR LA  P ++ LDEPTS LD
Sbjct: 121 LDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           PI+A + ++ L+ L+     ++ ++T  +
Sbjct: 181 PISAGKIEETLLGLKDD--YTMLLVTRSM 207


>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score = 90.5 bits (225), Expect = 4e-19
 Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 8/229 (3%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
            L   NLT+    + ILN+++L +  G+I  +IG +G GKS L++    L+   SG V +
Sbjct: 2   TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI---EHI 129
             + +++   +Q    + +L +L QH      +TV+E ++      L+L   L       
Sbjct: 62  GDKPISMLSSRQ---LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR 118

Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
           V+  +    +    A+     LSGG  +R  LA  LA D  ++ LDEPT+ LD     E 
Sbjct: 119 VNQAMEQTRI-NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177

Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
            +L+ +L    G +V  + HDLN     C+ + V+    +M +GT  ++
Sbjct: 178 MRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225


>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 90.4 bits (224), Expect = 5e-19
 Identities = 64/202 (31%), Positives = 110/202 (54%), Gaps = 12/202 (5%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL----NLAKGKQ 84
           L NINL I   E+  +IG SG GKS  ++  L L+ ++   VK+ GE      N+ KGK 
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIK-TLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86

Query: 85  NFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143
           +       +G++FQ G  F   ++ +N++   + H       ++ IV   +  V L  E 
Sbjct: 87  DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV 145

Query: 144 ANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200
            + +  Q   LSGG  +R+ +ARALA +PD+L +DEPTS LDP++  + ++L++KL+   
Sbjct: 146 KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK- 204

Query: 201 GLSVYMITHDLNNLISTCNRVA 222
             ++ ++TH++       ++ A
Sbjct: 205 -YTIVIVTHNMQQAARVSDQTA 225


>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 327

 Score = 90.0 bits (224), Expect = 6e-19
 Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 6/187 (3%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLI-PRVSGEVKVLGEHLNLAKGKQNFA 87
           L+ ++  + RG+ L V+G SG GKS L R +L +I     GE+   G+ L  A  +    
Sbjct: 31  LDGVSFTLERGKTLAVVGESGCGKSTLAR-LLTMIETPTGGELYYQGQDLLKADPEAQKL 89

Query: 88  FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
              K+ ++FQ  +G+L     V + +  P+  + +L A          +A VGL PE  +
Sbjct: 90  LRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYD 149

Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD-PIAAEEFDKLLIKLRHSLGLSV 204
             P   SGG  +R+++ARAL +DPD++  DEP S LD  + A+  + L++ L+  LGLS 
Sbjct: 150 RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN-LMMDLQQELGLSY 208

Query: 205 YMITHDL 211
             I+HDL
Sbjct: 209 VFISHDL 215


>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 89.7 bits (222), Expect = 6e-19
 Identities = 59/209 (28%), Positives = 112/209 (53%), Gaps = 10/209 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + V NL+   + + IL  ++++I + ++  +IG SG GKS  ++  L  +  +  EV+V 
Sbjct: 8   IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESEVRVE 66

Query: 74  GE----HLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           G     + N+ + + N      ++ ++     LF  M+V +N++  +K     P   I+ 
Sbjct: 67  GRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDD 125

Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
           IV + +    L  E  + +      LSGG  +R+ +ARALA+ P +L +DEP  GLDPIA
Sbjct: 126 IVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNL 214
           + + + L+  LR    L++ +++H+L+ +
Sbjct: 186 SMKVESLIQSLRLRSELTMVIVSHNLHQV 214


>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
           PQQ-dependent alcohol dehydrogenase system.  Members of
           this protein family are the ATP-binding subunit of an
           ABC transporter system that is associated with PQQ
           biosynthesis and PQQ-dependent alcohol dehydrogenases.
           While this family shows homology to several efflux ABC
           transporter subunits, the presence of a periplasmic
           substrate-binding protein and association with systems
           for catabolism of alcohols suggests a role in import
           rather than detoxification.
          Length = 236

 Score = 89.3 bits (222), Expect = 9e-19
 Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L V  L+     R  L++++  +  GE + ++G +G GKS L   +  L     G++ V 
Sbjct: 2   LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           G  L  A      A  A+LGV+FQ   L   ++V++N+      H  L        +   
Sbjct: 62  GHDLRRAPR----AALARLGVVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAAL 116

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           +A +GL  E A+    +L+GG  +RV +ARAL   P LL LDEPT GLDP +       +
Sbjct: 117 LARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV 175

Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
             L    GLSV   TH L + I   +R+ V+ +  ++ +G  +++
Sbjct: 176 RALCRDQGLSVLWATH-LVDEIEADDRLVVLHRGRVLADGAAAEL 219


>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding cassette
           (ABC) protein of the three subunit molybdate ABC
           transporter. The three proteins of this complex are
           homologous to proteins of the sulfate ABC transporter.
           Molybdenum may be used in nitrogenases of
           nitrogen-fixing bacteria and in molybdopterin cofactors.
           In some cases, molybdate may be transported by a sulfate
           transporter rather than by a specific molybdate
           transporter.
          Length = 354

 Score = 89.4 bits (222), Expect = 9e-19
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 18/223 (8%)

Query: 32  INLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN-LAKGKQNFAFSA 90
            +  +    +  + G SG+GK+ L+R I GL     GE+ + G  L    KG        
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75

Query: 91  KLGVLFQHGALFSSMTVQENI------SMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144
           ++G +FQ   LF  ++V+ N+      + P  E       +IE        ++G+     
Sbjct: 76  RIGYVFQEARLFPHLSVRGNLRYGMKRARP-SERRISFERVIE--------LLGIGHLLG 126

Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204
            L P +LSGG  +RV++ RAL   P LL +DEP + LD     E    L +L    G+ +
Sbjct: 127 RL-PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185

Query: 205 YMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV-DSNDPWI 246
             ++H L  ++   +RV V++   +   G I+++    + PW+
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228


>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
           Provisional.
          Length = 254

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 37/245 (15%)

Query: 12  KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP----RVS 67
           + + +RN+ ++   + +++ ++L + RG +L ++G SG+GKS+     LG++P    + +
Sbjct: 3   QQIELRNIALQ-AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61

Query: 68  GEVKVLGEHLNLA--KGK------QN--FAFSAKLGVLFQHGALFSSMTVQENISMPIKE 117
           G V + G+ +     +G+      QN   AF+  L  +  H       T           
Sbjct: 62  GRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP-LHTMHTHA----RETCLA-------- 108

Query: 118 HLNLPAD--LIEHIVHTKIAIVGL--PPETANLMPFQLSGGMIKRVSLARALAIDPDLLF 173
            L  PAD   +   +      VGL        L PF++SGGM++R+ +A AL  +   + 
Sbjct: 109 -LGKPADDATLTAALEA----VGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII 163

Query: 174 LDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
            DEPT+ LD +A      LL  +     L + ++THD+  +    + VAV+    I+++G
Sbjct: 164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223

Query: 234 TISDI 238
            +  +
Sbjct: 224 DVETL 228


>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 88.9 bits (220), Expect = 1e-18
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 10/234 (4%)

Query: 12  KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIPRVSG 68
             + V NL    ++  IL N+NLDI +  +  +IG SG GKS  +R +     LIP    
Sbjct: 2   YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61

Query: 69  EVKVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127
           E  +  + +++     +      K+G++FQ    F   ++ +N++  ++ H     D IE
Sbjct: 62  EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIE 120

Query: 128 HIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
             V   +    L  E  + +      LSGG  +R+ +AR +A+ P+++ +DEP S LDPI
Sbjct: 121 ERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPI 180

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           +  + + L+ KL+     ++ ++TH++          +      I++ G    I
Sbjct: 181 STTKIEDLIHKLKED--YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232


>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 88.5 bits (219), Expect = 2e-18
 Identities = 58/206 (28%), Positives = 110/206 (53%), Gaps = 12/206 (5%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIP--RVSG 68
           +  +NL +    +  LN+INL I   +I  +IG SG GKS  +R +     LI   ++ G
Sbjct: 5   MESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEG 64

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           EV + G+++   K         ++G++FQ    F  M++ +N++   + H       ++ 
Sbjct: 65  EVLLDGKNI-YDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDK 122

Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
           IV   +    L  E  + +     +LSGG  +R+ +AR +A+ PD++ +DEPTS LDPI+
Sbjct: 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIS 182

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211
             + + L+++L+     ++ ++TH++
Sbjct: 183 TLKIEDLMVELKKE--YTIVIVTHNM 206


>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 61/219 (27%), Positives = 120/219 (54%), Gaps = 8/219 (3%)

Query: 22  ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK 81
           E   ++ L+++NL++ +GE L ++G +G+GKS + + +  L+    G+V V  + L+ + 
Sbjct: 19  ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV--DGLDTSD 76

Query: 82  GKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGL 139
            +  +    K G++FQ+    + +++ V+E+++    E+L +P + I   V   +  VG+
Sbjct: 77  EENLWDIRNKAGMVFQNPDNQIVATI-VEEDVAFG-PENLGIPPEEIRERVDESLKKVGM 134

Query: 140 PPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHS 199
             E     P  LSGG  +RV++A  LA+ P+ +  DEPT+ LDP    E    + +L   
Sbjct: 135 Y-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK 193

Query: 200 LGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
            G+++ +ITH +   +   +R+ V+    ++ EGT  +I
Sbjct: 194 YGITIILITHYMEEAVEA-DRIIVMDSGKVVMEGTPKEI 231


>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 282

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 69/215 (32%), Positives = 117/215 (54%), Gaps = 10/215 (4%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILG-LIPRVSGEVK--VLGEHLNLAKGKQ 84
            LN+I+  I RG    +IG +G+GKS + + I G L+P  +   K  V G  L     K 
Sbjct: 22  ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT---AKT 78

Query: 85  NFAFSAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143
            +    K+G++FQ+    F   TV ++++  + E+  +P   +  IV   +A VG+  + 
Sbjct: 79  VWDIREKVGIVFQNPDNQFVGATVGDDVAFGL-ENRAVPRPEMIKIVRDVLADVGML-DY 136

Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203
            +  P  LSGG  +RV++A  LA++P ++ LDE TS LDP   E+  KL+ KL+    L+
Sbjct: 137 IDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT 196

Query: 204 VYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           V  ITHD++   +  ++V V+    ++ +G+  +I
Sbjct: 197 VISITHDIDE-ANMADQVLVLDDGKLLAQGSPVEI 230


>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 63/210 (30%), Positives = 110/210 (52%), Gaps = 12/210 (5%)

Query: 10  EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIP-- 64
            E ILS +NL +    +  L +I + I +  +  +IG SG GKS L+R    +  LIP  
Sbjct: 3   MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGC 62

Query: 65  RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124
           R++G++   GE++    G    A   K+G++FQ    F   ++ EN++   + H      
Sbjct: 63  RITGDILYNGENIM-DSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKK 120

Query: 125 LIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181
            ++ IV   +    L  E  + +      LSGG  +R+ +AR LA++P+++ +DEP S L
Sbjct: 121 TLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSAL 180

Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           DPIA  + + L+  L+     +V ++TH++
Sbjct: 181 DPIATAKIEDLIEDLKKE--YTVIIVTHNM 208


>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 326

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 13/221 (5%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---RVSGEVKVLGEHLNL----AK 81
           ++ I+  + +GE++G++G SG+GKS+    I+GLI    RV  E K+     +L     K
Sbjct: 23  VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE-KLEFNGQDLQRISEK 81

Query: 82  GKQNFAFSAKLGVLFQHG--ALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGL 139
            ++N    A++ ++FQ    +L    TV   I   IK H               +  VG+
Sbjct: 82  ERRNLV-GAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGI 140

Query: 140 PPETANL--MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197
           P   + L   P QLSGGM +RV +A A+A  P LL  DEPT+ LD     +  +LL++L+
Sbjct: 141 PDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQ 200

Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
               +++ +ITHDL  +    +++ V+    +++ G   DI
Sbjct: 201 QKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241


>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
           Provisional.
          Length = 510

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 61/248 (24%), Positives = 119/248 (47%), Gaps = 30/248 (12%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           E +  VRN+T     ++   +I+  + RGEILG  G  G+G++ LM  + G+  R  GE+
Sbjct: 263 ETVFEVRNVTSRDRKKV--RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENISMPIKEHLNLPA-- 123
           ++ G+ ++          + K G+ +     +    F + ++ +N++  I   L      
Sbjct: 321 RLNGKDISPRSPLD----AVKKGMAYITESRRDNGFFPNFSIAQNMA--ISRSLKDGGYK 374

Query: 124 ---DLIEHIVHTKIA-----IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLD 175
               L   +   + A     ++ L   + N    +LSGG  ++V +++ L   P+++  D
Sbjct: 375 GAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434

Query: 176 EPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235
           EPT G+D  A  E  K++ +L    G  + M++ +L  +I+ C+R+AV        EG +
Sbjct: 435 EPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAV------FCEGRL 487

Query: 236 SDIVDSND 243
           + I+ + D
Sbjct: 488 TQILTNRD 495



 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 20/247 (8%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
              +S+  +         L ++NL +  GEI  ++G +G GKS LM+ + G+     G +
Sbjct: 3   TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62

Query: 71  KVLGEHLNLAKGKQNFAFSAKLG--VLFQHGALFSSMTVQENI---SMPIKEHLNLP-AD 124
            +   + N    K +   +A+LG  +++Q  ++   +TV EN+       K+   +   D
Sbjct: 63  TINNINYN----KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIID 118

Query: 125 LIEHIVHTKIA--IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
             E  V   +    VGL  +    +   LS    + + +A+ L +D  ++ +DEPTS L 
Sbjct: 119 WREMRVRAAMMLLRVGLKVDLDEKVA-NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL- 176

Query: 183 PIAAEEFDKLLIKLRH--SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
               +E D L + +      G ++  I+H L  +   C+R  V++    +  G +SD+  
Sbjct: 177 --TNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV-- 232

Query: 241 SNDPWIR 247
           SND  +R
Sbjct: 233 SNDDIVR 239


>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
          Length = 251

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 23/200 (11%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           ++S+ N+++    R +L++++L++  G+IL ++G +G GKS L+R +LGL+    G +K 
Sbjct: 4   LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK- 62

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
               L +    Q       L +           T +E+I +P  + +     LI+     
Sbjct: 63  RNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDI-LPALKRVQ-AGHLIDA---- 116

Query: 133 KIAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
                          P Q LSGG  +RV LARAL   P LL LDEPT G+D         
Sbjct: 117 ---------------PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161

Query: 192 LLIKLRHSLGLSVYMITHDL 211
           L+ +LR  L  +V M++HDL
Sbjct: 162 LIDQLRRELDCAVLMVSHDL 181


>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 285

 Score = 86.8 bits (215), Expect = 5e-18
 Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 14/221 (6%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI-----LGLIPR 65
           E ++  R+L +   +   L+++++DI   ++  +IG SG GKS  +R I     L    R
Sbjct: 37  ETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96

Query: 66  VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125
           V GE+   G+++  A      A   ++G++FQ    F   ++ +N++  +K       D 
Sbjct: 97  VEGELTFRGKNVYDAD-VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ-GYDGD- 152

Query: 126 IEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           I+  V   +    L  E  + +      LSGG  +R+ +ARA+A DP+++ +DEP S LD
Sbjct: 153 IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAV 223
           P+A  + + L+ +L      +V ++TH++       ++ AV
Sbjct: 213 PVATSKIEDLIEELAEE--YTVVIVTHNMQQAARISDKTAV 251


>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 86.6 bits (214), Expect = 5e-18
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 9/220 (4%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L NINL I +GE +G+IG +G+GKS L   + GL+    G+V V G  ++     +    
Sbjct: 18  LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG--IDTGDFSKLQGI 75

Query: 89  SAKLGVLFQHGAL-FSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147
              +G++FQ+    F   TV+E+++    E+L LP   I   V   +A +GL  +  +  
Sbjct: 76  RKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPPIEIRKRVDRALAEIGL-EKYRHRS 133

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           P  LSGG  + V+LA  L ++P+ L  DE TS LDP +     + + KL H  G ++  I
Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYI 192

Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247
           TH+L  L    +R+ V+ +  I+ EG   +++  +D  ++
Sbjct: 193 THNLEEL-HDADRIIVMDRGKIVLEGEPENVL--SDVSLQ 229


>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
           ATP-binding protein.  This small clade of ABC-type
           transporter ATP-binding protein components is found as a
           three gene cassette along with a periplasmic
           substrate-binding protein (TIGR03868) and a permease
           (TIGR03869). The organisms containing this cassette are
           all Actinobacteria and all contain numerous genes
           requiring the coenzyme F420. This model was defined
           based on five such organisms, four of which are lacking
           all F420 biosynthetic capability save the final
           side-chain polyglutamate attachment step (via the gene
           cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
           marine actinobacterium PHSC20C1 this cassette is in an
           apparent operon with the cofE gene and, in PHSC20C1,
           also with a F420-dependent glucose-6-phosphate
           dehydrogenase (TIGR03554). Based on these observations
           we propose that this ATP-binding protein is a component
           of an F420-0 (that is, F420 lacking only the
           polyglutamate tail) transporter.
          Length = 256

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 12/231 (5%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L +  ++     R+I++ +++    G + G++G +G+GKS L+R + G +   +G V + 
Sbjct: 2   LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-----PADLIEH 128
           G  L    G    A + ++ ++ Q       +TV++ +++    H +L     P D    
Sbjct: 62  GVDL---HGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHD--AA 116

Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188
           +V   +A   L       M   LSGG  +RV +ARALA +P LL LDEPT+ LD  A  E
Sbjct: 117 VVDRALARTELSHLADRDMS-TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLE 175

Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
              L+ +L  + G++V    HDLN   S C+ V V+    ++  G   +++
Sbjct: 176 TLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225


>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 59/208 (28%), Positives = 110/208 (52%), Gaps = 11/208 (5%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LGLIP--RVS 67
           +LS +++ I   ++  + N+NLD+ RG +  +IG SG GK+  +R I     L P  RV+
Sbjct: 4   LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63

Query: 68  GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127
           G + + G+ +         A   ++G++FQ    F +M+V +N+   +K       D + 
Sbjct: 64  GRILLDGQDI-YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLM 122

Query: 128 HIVHTKIAIVGLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
            +    +    L  E  + +      LSGG  +R+ +ARALA++P++L +DEPTS LDP 
Sbjct: 123 EVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLN 212
           +    + L+  L+     ++ ++TH+++
Sbjct: 183 STARIEDLMTDLKKV--TTIIIVTHNMH 208


>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 85.5 bits (211), Expect = 1e-17
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 18/226 (7%)

Query: 7   PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRG-------I 59
            S+   ++  +   I   N + + + ++ I + EI G IG SG GKS ++R        +
Sbjct: 2   VSEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLV 61

Query: 60  LGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHL 119
            G   R  G V  LG+ +   KG         +G++FQ    FS M++ +N++  ++  L
Sbjct: 62  KGF--RFEGHVHFLGQDV-YGKGVDPVVVRRYIGMVFQQPNPFS-MSIFDNVAFGLR--L 115

Query: 120 N-LPADLIEHIVHT--KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176
           N    DL + + H     A+     +   +    LSGG  +R+ +ARA+A +P++L LDE
Sbjct: 116 NRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE 175

Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVA 222
           P S LDPIA    ++L+++L+     ++ ++TH++   I   +  A
Sbjct: 176 PCSALDPIATRRVEELMVELKKD--YTIALVTHNMQQAIRVADTTA 219


>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
           subunit; Provisional.
          Length = 265

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 1   MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60
           MQ     +  +   ++RN++  +  R +L+ ++L    G++ G+IG +G+GKS L++ +L
Sbjct: 1   MQ--EYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-ML 57

Query: 61  GL-IPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM---PIK 116
           G   P   GE+ +  + L     K   AF+ K+  L Q       MTV+E +++   P  
Sbjct: 58  GRHQPPSEGEILLDAQPLESWSSK---AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH 114

Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176
             L          V   I++VGL P  A+ +   LSGG  +R  +A  +A D   L LDE
Sbjct: 115 GALGRFGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDE 173

Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236
           PTS LD     +   L+ +L    GL+V  + HD+N     C+ +  ++   ++ +GT +
Sbjct: 174 PTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233

Query: 237 DIVDS 241
           +++  
Sbjct: 234 ELMRG 238


>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 84.6 bits (209), Expect = 2e-17
 Identities = 59/210 (28%), Positives = 111/210 (52%), Gaps = 12/210 (5%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIP--R 65
           +KI++  ++ +       L  I+LD  + EI  +IG SG GKS  +R +     LIP   
Sbjct: 3   KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62

Query: 66  VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125
           ++G V + G+++  A  +       ++G++FQ    F   ++ EN+   ++        +
Sbjct: 63  ITGNVSLRGQNI-YAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAV 120

Query: 126 IEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           ++  V T +    +  E  + +      LSGG  +RV +AR LA+ PD++ LDEPTS LD
Sbjct: 121 LDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212
           PI++ + + +L++LR     ++ ++TH ++
Sbjct: 181 PISSTQIENMLLELRDQ--YTIILVTHSMH 208


>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 84.3 bits (208), Expect = 3e-17
 Identities = 56/202 (27%), Positives = 104/202 (51%), Gaps = 12/202 (5%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIP--RVSGEVKVLGEHLNLAKGK 83
           L  I+++I    ++  IG SG GKS  +R    +  LIP  R+ GE+++ G ++   KG 
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI-YDKGV 77

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143
           Q       +G++FQ    F   ++ EN++  ++ +       I   V   +    L  E 
Sbjct: 78  QVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV 136

Query: 144 ANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200
            + +    F LSGG  +R+ +ARA+A+ P +L +DEP S LDPI+  + ++L+ +L+   
Sbjct: 137 KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD- 195

Query: 201 GLSVYMITHDLNNLISTCNRVA 222
             ++ ++TH++       ++ A
Sbjct: 196 -YTIVIVTHNMQQAARVSDKTA 216


>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 68/217 (31%), Positives = 119/217 (54%), Gaps = 11/217 (5%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L  ++L I  G    ++G +G GKS L+  + G+     G VKV+G  +N    K     
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKW---V 77

Query: 89  SAKLGVLFQH--GALFSSMTVQENISM-PIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
            +K+G++FQ     +FSS TV ++++  P+  ++ L  D +E  V   +  V +  +  +
Sbjct: 78  RSKVGLVFQDPDDQVFSS-TVWDDVAFGPV--NMGLDKDEVERRVEEALKAVRMW-DFRD 133

Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
             P+ LS G  KRV++A  LA+DPD++ LDEP + LDP   E   ++L +L H+ G +V 
Sbjct: 134 KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVI 192

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
           + THD++      ++V V+++  ++ EG  S + D +
Sbjct: 193 VATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229


>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
           Provisional.
          Length = 232

 Score = 83.5 bits (207), Expect = 5e-17
 Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 15/183 (8%)

Query: 33  NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-HLNLAKGKQNFAFSAK 91
           +L + RGE + ++G SG GKS L+  I G +   SG + + G+ H      ++       
Sbjct: 19  DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRR------P 72

Query: 92  LGVLFQHGALFSSMTVQENISMPIKEHLNLPAD---LIEHIVHTKIAIVGLPPETANLMP 148
           + +LFQ   LFS +TV +NI + +   L L A     +  I       +G+    A L P
Sbjct: 73  VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQ----MGIEDLLARL-P 127

Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
            QLSGG  +RV+LAR L  +  +L LDEP S LDP   +E   L+ ++     L++ M++
Sbjct: 128 GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS 187

Query: 209 HDL 211
           H L
Sbjct: 188 HSL 190


>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 286

 Score = 83.0 bits (205), Expect = 8e-17
 Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 19/221 (8%)

Query: 6   IPSQEEKI-------LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRG 58
           +P + +K+       +  +N +I       +  +N DIL   +  +IG SG GKS  +R 
Sbjct: 25  LPPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRA 84

Query: 59  IL---GLIP--RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM 113
           I     LIP    +G +   GE +   K         K+G++FQ    F   ++ +NI+ 
Sbjct: 85  INRMNDLIPSCHTTGALMFDGEDI-YGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAY 142

Query: 114 PIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPD 170
             + H       +E IV   +    L  E ++ +      LSGG  +R+ +AR LA++P+
Sbjct: 143 GPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPE 202

Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           +L LDEPTS LDP A  + + L+ +LR S   ++ ++TH++
Sbjct: 203 ILLLDEPTSALDPKATAKIEDLIQELRGS--YTIMIVTHNM 241


>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
           protein; Provisional.
          Length = 648

 Score = 82.8 bits (205), Expect = 8e-17
 Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 32/198 (16%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR-VSGEVKVLGEHLN------LA 80
           +L  I+LDI  GE++ ++G+SG+GKS LM  ILG + +  SG  +V G+ +       LA
Sbjct: 23  VLKGISLDIYAGEMVAIVGASGSGKSTLM-NILGCLDKPTSGTYRVAGQDVATLDADALA 81

Query: 81  K-GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPI-------KEHLNLPADLIEHIVHT 132
           +  +++F F      +FQ   L S +T  +N+ +P        K+ L    +L++ +   
Sbjct: 82  QLRREHFGF------IFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRL--- 132

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
                GL  +     P QLSGG  +RVS+ARAL     ++  DEPT  LD  + EE   +
Sbjct: 133 -----GLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186

Query: 193 LIKLRHSLGLSVYMITHD 210
           L +LR   G +V ++THD
Sbjct: 187 LHQLRDR-GHTVIIVTHD 203


>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
          Length = 402

 Score = 82.6 bits (204), Expect = 9e-17
 Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 16/243 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           + V +L++E  +  +L+ ++L +  G ++G++G +G GK+ L+R I G +   +G V V 
Sbjct: 4   IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-----PADLIEH 128
           G+ +     +   A S ++  + Q  +L     V++ + M    H +        D    
Sbjct: 64  GDDVEALSAR---AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD--RA 118

Query: 129 IVHTKIAIVGLPPETANLMPF-QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
            V   +   G+        P   LSGG  +RV LARALA    +L LDEPT+ LD     
Sbjct: 119 AVERAMERTGVAQFADR--PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247
              +L+ +L    G +     HDL+     C+ + ++    +   G  +D++ +    +R
Sbjct: 177 RTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA--DTLR 233

Query: 248 SYF 250
           + F
Sbjct: 234 AAF 236


>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 269

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 59/217 (27%), Positives = 113/217 (52%), Gaps = 10/217 (4%)

Query: 1   MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60
               N    +  I+S++N+TI       + N+  DI RG++  +IG SG GKS ++R + 
Sbjct: 1   SIKTNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN 60

Query: 61  ---GLIPRVSGEVKVLGEHLNL-AKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--P 114
               LI   S + +VL +  +L            ++G++FQ    F   ++ ENI+    
Sbjct: 61  RMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGAR 119

Query: 115 IKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174
           I  +     +L+E  +  K A+     +  N   + LSGG  +R+ +AR +AI+P+++ +
Sbjct: 120 INGYTGDMDELVERSL-RKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILM 178

Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           DEP S LDPI+  + ++ + +L+ +   ++ ++TH++
Sbjct: 179 DEPCSALDPISTLKIEETMHELKKN--FTIVIVTHNM 213


>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein. 
          Length = 617

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 37/211 (17%)

Query: 19  LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR---VSGEVKVLGE 75
              E   + +L N++     GE+L V+GSSG GK+ LM  +    P+    SG V + G 
Sbjct: 31  FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90

Query: 76  HLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL--------IE 127
            ++  + +   A+      + Q      ++TV+E+  +  + HL +P  +        ++
Sbjct: 91  PIDAKEMRAISAY------VQQDDLFIPTLTVREH--LMFQAHLRMPRRVTKKEKRERVD 142

Query: 128 HIV---------HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
            ++         +T+I + G            LSGG  KR++ A  L  DP LLF DEPT
Sbjct: 143 EVLQALGLRKCANTRIGVPGRVK--------GLSGGERKRLAFASELLTDPPLLFCDEPT 194

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
           SGLD   A    ++L  L    G ++    H
Sbjct: 195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIH 224


>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 82.0 bits (202), Expect = 1e-16
 Identities = 50/206 (24%), Positives = 109/206 (52%), Gaps = 11/206 (5%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LGLIP--RVSG 68
           + +  L +       + ++++D     +  +IG SG GKS ++R I     L+P  RV+G
Sbjct: 5   VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG 64

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           ++ +    +   +G    +   ++G++FQ    F +M++ +N+    K +  +     + 
Sbjct: 65  KILLDDTDI-YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE 123

Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
           IV + +  V L  E  + +     +LSGG  +R+ +AR +A+ P+++ +DEP S LDPI+
Sbjct: 124 IVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS 183

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211
             + ++L+ +L+     ++ ++TH++
Sbjct: 184 TLKIEELIEELKEK--YTIIIVTHNM 207


>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 249

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 15/218 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
            ++ NL +       L +INL I   ++  +IG SG GKS L+R +  +   + G VK+ 
Sbjct: 4   FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEG-VKIT 62

Query: 74  GEHLNLAKGKQNFA------FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127
           G+ L +  G+  +          K+G++FQ    F  M++ EN++  ++        +++
Sbjct: 63  GK-LTM-DGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLD 119

Query: 128 HIVHTKIAIVGLPPETA---NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
            +V   +    L  E         F LSGG  +R+ +AR +A++PD++ +DEPTS LDPI
Sbjct: 120 EVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPI 179

Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVA 222
           A  + ++L+ +L+ +   ++ ++TH +       +R A
Sbjct: 180 ATHKIEELMEELKKN--YTIVIVTHSMQQARRISDRTA 215


>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 207

 Score = 81.5 bits (202), Expect = 2e-16
 Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 21/200 (10%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L   +L      R++ + ++  +  GE L + G +G+GK+ L+R I GL+P  +G +K+ 
Sbjct: 3   LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLD 62

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI---EHIV 130
           G  ++             LG      A+  ++TV EN+           A  +   E  +
Sbjct: 63  GGDIDDPD---VAEACHYLG---HRNAMKPALTVAENLE--------FWAAFLGGEELDI 108

Query: 131 HTKIAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
              +  VGL P  A+L PF  LS G  +RV+LAR L  +  +  LDEPT+ LD  AA   
Sbjct: 109 AAALEAVGLAP-LAHL-PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD-AAAVAL 165

Query: 190 DKLLIKLRHSLGLSVYMITH 209
              LI+   + G  V   TH
Sbjct: 166 FAELIRAHLAQGGIVIAATH 185


>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 15/191 (7%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGL-----IPRVSGEVKVLGEHLNLAKGK 83
           L +++LDI    +   IG SG GKS  +R +  +       RV+G++ + GE +      
Sbjct: 35  LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY-DPRL 93

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEH--LNLPADLIEHIVHTKIAIVGLPP 141
                 A++G++FQ    F   ++ EN++   + H      A+L + IV T +   GL  
Sbjct: 94  DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAEL-DEIVETSLRKAGLWE 151

Query: 142 ETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198
           E  + +      LSGG  +R+ +ARA+A+ P+++ +DEP S LDPIA  + ++L+ +LR 
Sbjct: 152 EVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ 211

Query: 199 SLGLSVYMITH 209
           +   ++ ++TH
Sbjct: 212 N--YTIVIVTH 220


>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 269

 Score = 81.0 bits (200), Expect = 3e-16
 Identities = 65/217 (29%), Positives = 119/217 (54%), Gaps = 9/217 (4%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L +++ +I +G+   ++G +G+GKS + + ++G+    SGE+     + N A    NF  
Sbjct: 25  LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF----YNNQAITDDNFEK 80

Query: 89  SAK-LGVLFQHGA-LFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146
             K +G++FQ+    F    V+ +++  ++ H  +P D +   V   +  V +  E A+ 
Sbjct: 81  LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA-VPYDEMHRRVSEALKQVDML-ERADY 138

Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206
            P  LSGG  +RV++A  LA++P ++ LDE TS LDP A +    L+ K++    +++  
Sbjct: 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS 198

Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
           ITHDL+  +   + V V+ K  + KEGT ++I D  +
Sbjct: 199 ITHDLSEAMEA-DHVIVMNKGTVYKEGTPTEIFDHAE 234


>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 55/214 (25%), Positives = 115/214 (53%), Gaps = 14/214 (6%)

Query: 7   PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---- 62
             +EE  LS ++L +    +  +  I++   + +I  +IG SG+GKS  +R +  +    
Sbjct: 14  FPEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTI 73

Query: 63  -IPRVSGEVKVLGEHLNLAKGKQN-FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120
            I RV+G  ++L   +++ + + N +     +G++FQ    F+  ++ ENI+  ++    
Sbjct: 74  DIARVTG--QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGV 130

Query: 121 LPADLIEHIVHTKIAIVGLPPETA---NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177
               +++ IV T +    L  +     +     LSGG  +R+ +ARA+A+ PD+L +DEP
Sbjct: 131 KDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190

Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
            S LDPI+  + ++ + +L+ +   ++ ++TH++
Sbjct: 191 ASALDPISTMQLEETMFELKKN--YTIIIVTHNM 222


>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
           protein; Provisional.
          Length = 369

 Score = 80.5 bits (199), Expect = 4e-16
 Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 15/200 (7%)

Query: 15  SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74
           ++RN+T    + +I  +INLDI  GE +  +G SG GKS L+R I GL    SG++ +  
Sbjct: 5   TLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE 64

Query: 75  EHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           + +N +   ++       +G++FQ  AL+  ++V EN+S  +K       + I   V+  
Sbjct: 65  KRMNDVPPAERG------VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE-INQRVNQV 117

Query: 134 IAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190
             ++ L    A+L+   P  LSGG  +RV++ R L  +P +  LDEP S LD     +  
Sbjct: 118 AEVLQL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173

Query: 191 KLLIKLRHSLGLSVYMITHD 210
             + +L   LG ++  +THD
Sbjct: 174 IEISRLHKRLGRTMIYVTHD 193


>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 305

 Score = 80.3 bits (198), Expect = 4e-16
 Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 24/242 (9%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL-----IPR 65
           +  LSV +L +   +   L  +++DI    +  +IG SG GKS  +R +  +       R
Sbjct: 43  DAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAAR 102

Query: 66  VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125
           + G V++ G+ +    G        ++G++FQ    F   +++ENIS   ++H ++   L
Sbjct: 103 IDGSVELDGQDI-YQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGL 160

Query: 126 I------------EHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPD 170
           +            + +V   +    L  E  + +      LSGG  +R+ +AR LA+DP+
Sbjct: 161 LARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPE 220

Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIM 230
           ++ +DEP S LDPIA  + + L+ +L  +   +V ++TH++       ++ AV    G +
Sbjct: 221 VILMDEPASALDPIATSKIEDLIEEL--AEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278

Query: 231 KE 232
            E
Sbjct: 279 VE 280


>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
          Length = 222

 Score = 80.3 bits (198), Expect = 5e-16
 Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 23  LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKG 82
           L  R  L  +   +  GE+  + G SG GKS L++ I G+    +G++   G  +   K 
Sbjct: 12  LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKN 71

Query: 83  KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142
           ++      ++G++FQ   L    TV +N+++P+        D I   V   +  VGL  +
Sbjct: 72  REVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLDK 130

Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL 202
             N  P QLSGG  +RV +ARA+   P +L  DEPT  LD   +E   +L  +  + +G+
Sbjct: 131 AKNF-PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGV 188

Query: 203 SVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
           +V M THD+  LIS  +   +    G +  G
Sbjct: 189 TVLMATHDI-GLISRRSYRMLTLSDGHLHGG 218


>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter.  This
            model describes the photoreceptor protein (rim protein)
            in eukaryotes. It is the member of ABC transporter
            superfamily. Rim protein is a membrane glycoprotein which
            is localized in the photoreceptor outer segment discs.
            Mutation/s in its genetic loci is implicated in the
            recessive Stargardt's disease.
          Length = 2272

 Score = 80.1 bits (197), Expect = 5e-16
 Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 30/231 (12%)

Query: 16   VRNLT--IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
            V+NL    E + R  ++ +N+     +I   +G +G GK+  +  + GL+P  SG V V 
Sbjct: 931  VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG 990

Query: 74   GEHL--NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK--------EHLNLPA 123
            G+ +  NL   +Q+      LG+  QH  LF  +TV E+I    +          L + A
Sbjct: 991  GKDIETNLDAVRQS------LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEA 1044

Query: 124  DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
             L +  +H K           N     LSGGM +++S+A A   D  ++ LDEPTSG+DP
Sbjct: 1045 MLEDTGLHHK----------RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094

Query: 184  IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
             +      LL+K R   G ++ M TH ++      +R+A+I +  +   GT
Sbjct: 1095 YSRRSIWDLLLKYRS--GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143



 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 11/199 (5%)

Query: 39   GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL--NLAKGKQNFAFSAKLGVLF 96
            GE  G++G +G GK+   + + G     SG+  V G+ +  N++   QN      +G   
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN------MGYCP 2018

Query: 97   QHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMI 156
            Q  A+   +T +E++ +  +    +PA+ IE + +  I  +GL    A+ +    SGG  
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLR-GVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNK 2076

Query: 157  KRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLIS 216
            +++S A AL   P L+ LDEPT+G+DP A       ++ +    G +V + +H +    +
Sbjct: 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEA 2135

Query: 217  TCNRVAVIQKKGIMKEGTI 235
             C R+A++ K      GTI
Sbjct: 2136 LCTRLAIMVKGAFQCLGTI 2154


>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 79.2 bits (195), Expect = 9e-16
 Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 26/240 (10%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI-----PRVSG 68
           + +R+L +      +L+ +NL+I    I  ++G SG+GKS L+R    LI      RVSG
Sbjct: 4   IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63

Query: 69  EVKVLGEHLNLAKGKQNFAFSA-----KLGVLFQHGALFSSMTVQENISMPIKEH--LNL 121
           EV           G+  F         ++ ++FQ      ++++ EN+++ +K +  +  
Sbjct: 64  EV--------YLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKS 115

Query: 122 PADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
             +L E  V   +    L  E  + +     +LSGG  +R+ +ARALA  P++L  DEPT
Sbjct: 116 KKELQER-VRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           + LDP    + + L ++L+    +++ ++TH         + VA + K  I++ G   ++
Sbjct: 175 ANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232


>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 79.4 bits (196), Expect = 9e-16
 Identities = 56/206 (27%), Positives = 109/206 (52%), Gaps = 12/206 (5%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIP--RVSG 68
           +  R L+    +   L++I+L+  + ++  +IG SG GKS  +R +     LIP  RV G
Sbjct: 7   MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG 66

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           E+ + GE++             ++G++FQ    F   ++ EN++  ++ +       +  
Sbjct: 67  EILLDGENIY-DPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAE 124

Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
            V   +    L  E  + +      LSGG  +R+ +ARALA++P++L +DEP S LDPIA
Sbjct: 125 RVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIA 184

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211
            ++ ++L+ +L+     ++ ++TH++
Sbjct: 185 TQKIEELIHELKAR--YTIIIVTHNM 208


>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 264

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 14/212 (6%)

Query: 8   SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIP 64
           +  E +L   NL +   + + + N+ LDI + +I   IG SG GKS ++R    +  LIP
Sbjct: 5   NGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIP 64

Query: 65  --RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122
             RV G+V   G++L  A          ++G++FQ    F   ++ +NI+   +      
Sbjct: 65  GFRVEGKVTFHGKNLY-APDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARI-NGYK 121

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179
            D+ E +V   +    L  E  + +      LSGG  +R+ +ARA+A+ P+++ +DEP S
Sbjct: 122 GDMDE-LVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180

Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
            LDPI+    ++L+ +L+     ++ ++TH++
Sbjct: 181 ALDPISTLRIEELMHELKEQ--YTIIIVTHNM 210


>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 78.9 bits (194), Expect = 1e-15
 Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 13/206 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI-----LGLIPRVSG 68
           + V NL +    +  L N+++ I +  +  +IG SG GKS  +R +     L    R+ G
Sbjct: 13  IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128
           +V + GE +              +G++FQ    F  M++ +N++   + H     DL + 
Sbjct: 73  KVSIEGEDI-YEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDL-DG 129

Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
           +V   +    L  ET++ +      LSGG  +R+ +AR LA+ P ++  DEPTS LDPI+
Sbjct: 130 VVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211
               + L++ L+     ++ ++TH++
Sbjct: 190 TARIEDLIMNLKKD--YTIVIVTHNM 213


>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 274

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 56/209 (26%), Positives = 107/209 (51%), Gaps = 12/209 (5%)

Query: 10  EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIPRV 66
           +  +  V  + +     + L +++L I   +I+  IG SG GKS L+R    +  LIP  
Sbjct: 17  DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA 76

Query: 67  SGEVKVLGEHLNLAKGKQN-FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125
             E ++L    N+   + N      ++G++FQ    F   ++ ENI+   +   N     
Sbjct: 77  KVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRA--NGYKGN 133

Query: 126 IEHIVHTKIAIVGLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           ++ +V   +    +  E  + +  +   LSGG  +R+ +ARA+A+ PD+L +DEP S LD
Sbjct: 134 LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           PI+  + ++L ++L+     ++ M+TH++
Sbjct: 194 PISTRQVEELCLELKEQ--YTIIMVTHNM 220


>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
           Provisional.
          Length = 501

 Score = 78.0 bits (193), Expect = 2e-15
 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 35/229 (15%)

Query: 32  INLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAK 91
           I+  +  GEI+G+ G  G G+S LM+ + G   R +G+V + G+ +++   +   A  A 
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRD--AIRA- 328

Query: 92  LGVLF------QHGALFSSMTVQENISMPIKEHLNLPADLI-----------EHIVHTKI 134
            G++         G +    +V +NI++  + H +L A  +             I    I
Sbjct: 329 -GIMLCPEDRKAEG-IIPVHSVADNINISARRH-HLRAGCLINNRWEAENADRFIRSLNI 385

Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
                 P    L+   LSGG  ++  L R L+ D  ++ LDEPT G+D  A  E   ++ 
Sbjct: 386 KT----PSREQLIMN-LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440

Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
           +L    G++V  ++ DL  ++   +R+ V      M+EG I+  +    
Sbjct: 441 ELAAQ-GVAVLFVSSDLPEVLGVADRIVV------MREGRIAGELAREQ 482



 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 52/203 (25%), Positives = 102/203 (50%), Gaps = 18/203 (8%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L++I+ D   G++  ++G +G GKS L++ + G     +G + + G+ +  A      A 
Sbjct: 20  LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTA--AL 77

Query: 89  SAKLGVLFQHGALFSSMTVQENI---SMPIKEHLNLPADLIEHIVHTKIAIVG--LPPET 143
           +A + +++Q   L   MTV EN+    +P K  +     L       ++  +G  + P+T
Sbjct: 78  AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE-AREQLEHLGVDIDPDT 136

Query: 144 ANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL--LIKLRHSL 200
               P + LS G  + V +A+ALA +  ++  DEPTS L   +A E ++L  +I+   + 
Sbjct: 137 ----PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL---SAREIEQLFRVIRELRAE 189

Query: 201 GLSVYMITHDLNNLISTCNRVAV 223
           G  +  ++H +  + + C+ + V
Sbjct: 190 GRVILYVSHRMEEIFALCDAITV 212


>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 265

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 14/214 (6%)

Query: 7   PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLI 63
           P+Q++    V  L         L NIN+ +   ++  +IG SG GKS  +R    +  L 
Sbjct: 12  PTQQKSE--VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69

Query: 64  P--RVSGEVKVLGEHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120
           P     GE+ +  +++N L+          ++ ++FQ    F   ++ EN++  ++    
Sbjct: 70  PGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV 128

Query: 121 LPADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEP 177
               ++E  V   +    L  E  + +    F LSGG  +R+ +ARALA DP++L  DEP
Sbjct: 129 KRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188

Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           TS LDPIA    ++L+  L++   +++ ++TH++
Sbjct: 189 TSALDPIATASIEELISDLKNK--VTILIVTHNM 220


>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
           transporter, ATP-binding protein.  Members of this
           protein family are ABC transporter ATP-binding subunits,
           part of a three-gene putative bacteriocin transport
           operon. The other subunits include another ATP-binding
           subunit (TIGR03796), which has an N-terminal propeptide
           cleavage domain, and an HlyD homolog (TIGR03794). In a
           number of genomes, a conserved propeptide sequence with
           a classic Gly-Gly motif.
          Length = 686

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 47/227 (20%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQ 84
           IL++++L I  GE + ++G SG+GKS L+R +LG     SG V   G     L++     
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQ---- 523

Query: 85  NFAFSAKLGVLFQHGALFSSMTVQENI----SMPIKE------HLNLPADLIEHI---VH 131
             A   +LGV+ Q+G L S  ++ ENI     + + E         L  D I  +   +H
Sbjct: 524 --AVRRQLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAED-IRAMPMGMH 579

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD----PIAAE 187
           T I+      E        LSGG  +R+ +ARAL   P +L  DE TS LD     I +E
Sbjct: 580 TVIS------EGGG----TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE 629

Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
             ++        L ++  +I H L+  I   +R+ V+    ++++GT
Sbjct: 630 SLER--------LKVTRIVIAHRLST-IRNADRIYVLDAGRVVQQGT 667


>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
           Provisional.
          Length = 506

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 62/232 (26%), Positives = 116/232 (50%), Gaps = 24/232 (10%)

Query: 11  EKILSVRNLT---IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP-RV 66
           E IL VRNLT       +   +++++  + RGEILG+ G  G G++ L++ + G  P R 
Sbjct: 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW 316

Query: 67  SGEVKVLGEHLNLAKGKQNFAFSAKLGVLF------QHGALFSSMTVQENISMPI----- 115
            GE+ + G+ + +    +N   +   G+        + G +   M V +NI++       
Sbjct: 317 EGEIFIDGKPVKI----RNPQQAIAQGIAMVPEDRKRDG-IVPVMGVGKNITLAALDRFT 371

Query: 116 -KEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174
               ++  A+L    +   I  + +   +  L   +LSGG  ++  LA+ L ++P +L L
Sbjct: 372 GGSRIDDAAEL--KTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILIL 429

Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
           DEPT G+D  A  E  KL+ +L    G+++ +I+ +L  ++   +RV V+ +
Sbjct: 430 DEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHE 480



 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 16/222 (7%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--VSG 68
           E +L ++N+T        L+N++L +  GEI+ + G +G GKS LM+ + G+ P     G
Sbjct: 3   EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEG 62

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENISM--PIKEHLNLPAD 124
           E+   GE L       N   + + G+  + Q  AL   ++V ENI +   I     +  D
Sbjct: 63  EIIFEGEELQA----SNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD 118

Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
            +       +A + L           L  G  + V +A+AL     LL LDEPT+ L   
Sbjct: 119 AMYLRAQKLLAQLKLDIN-PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL--- 174

Query: 185 AAEEFDKLL--IKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224
              E   LL  I+   + G++   I+H LN + +  + + VI
Sbjct: 175 TESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI 216


>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA.  This
           model describes the cyt c biogenesis protein encoded by
           ccmA in bacteria. An exception is, an arabidopsis
           protein. Quite likely this is encoded by an organelle.
           Bacterial c-type cytocromes are located on the
           periplasmic side of the cytoplasmic membrane. Several
           gene products encoded in a locus designated as 'ccm' are
           implicated in the transport and assembly of the
           functional cytochrome C. This cluster includes genes:
           ccmA;B;C;D;E;F;G and H. The posttranslational pathway
           includes the transport of heme moiety, the secretion of
           the apoprotein and the covalent attachment of the heme
           with the apoprotein. The proteins ccmA and B represent
           an ABC transporter; ccmC and D participate in heme
           transfer to ccmE, which function as a periplasmic heme
           chaperone. The presence of ccmF, G and H is suggested to
           be obligatory for the final functional assembly of
           cytochrome c.
          Length = 198

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 14/182 (7%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L+ RNL      R++   ++  +  GE L V G +G GK+ L+R + GL+   SGEV+  
Sbjct: 1   LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60

Query: 74  GEHLNLAKG--KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           G  L   +    +N  +   L        L   ++  EN+       ++  A      + 
Sbjct: 61  GTALAEQRDEPHRNILYLGHL------PGLKPELSALENLHF--WAAIHGGAQR---TIE 109

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
             +A VGL     +L   QLS G  +R++LAR       L  LDEPT+ LD         
Sbjct: 110 DALAAVGL-TGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAG 168

Query: 192 LL 193
           LL
Sbjct: 169 LL 170


>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
           protein UrtD.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 242

 Score = 76.8 bits (190), Expect = 5e-15
 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 22/243 (9%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           IL +  L++  +    LN+++L +  GE+  +IG +G GK+ +M  I G      G V  
Sbjct: 2   ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF 61

Query: 73  LGEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENISMPIKEHLNLPADL----- 125
            G   +L    +     A+ G+   FQ   +F ++TV EN+ + +    ++ A L     
Sbjct: 62  GGT--DLTGLPE--HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLS 117

Query: 126 --IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
              +  +   +  +GL  E A+ +   LS G  + + +   L  DP LL LDEP +G+  
Sbjct: 118 AEEKDRIEEVLETIGLADE-ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTD 176

Query: 184 IAAEEFDKLLIKL--RHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
              E+  +LL  L  +H    SV ++ HD+  + S  ++V V+ +  ++ EG++  +   
Sbjct: 177 EETEKTAELLKSLAGKH----SVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV--Q 230

Query: 242 NDP 244
            DP
Sbjct: 231 ADP 233


>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
           Provisional.
          Length = 501

 Score = 77.0 bits (190), Expect = 5e-15
 Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 26/236 (11%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           E  L V NL+        +N+++  + +GEILGV G  G G++ LM+ + G +PR SG V
Sbjct: 255 EVRLKVDNLSGPG-----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENISMPIKEHLNLPADL 125
            + G  +     +   A     G+++     +   L   M+V+EN+S+    + +     
Sbjct: 310 TLDGHEVVTRSPQDGLAN----GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGS 365

Query: 126 IEH-----IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
           ++H      V   I +  +   +       LSGG  ++V++AR L   P +L LDEPT G
Sbjct: 366 LKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425

Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236
           +D  A +E  +L+ + +   GLS+ +++ ++  ++   +R+ V      M EG IS
Sbjct: 426 VDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILV------MHEGRIS 474



 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 17/218 (7%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L+   L++  G ++ ++G +G GKS +M+ + G+  R +G +  LG+ +     K +   
Sbjct: 20  LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKI--------AIVGLP 140
            A +G++ Q   L   +T+ ENI +  +E +N        I   K+        A + L 
Sbjct: 79  -AGIGIIHQELNLIPQLTIAENIFLG-REFVN----RFGRIDWKKMYAEADKLLARLNLR 132

Query: 141 PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200
             +  L+  +LS G  + V +A+ L+ +  ++ +DEPT  L     E   +++ +L+   
Sbjct: 133 FSSDKLVG-ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ- 190

Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           G  +  I+H L  +   C+ V V +    + E  ++D+
Sbjct: 191 GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228


>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
          Length = 659

 Score = 76.8 bits (189), Expect = 5e-15
 Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 23/191 (12%)

Query: 20  TIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNL 79
           T ++  R ILN +      GEIL V+G SG+GKS L+  + G I   +    +L  +   
Sbjct: 75  TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP 134

Query: 80  AKGKQNFAFSAKLGVLFQHGALFSSMTVQENI----------SMPIKEHLNLPADLIEHI 129
            K         + G + Q   L+  +TV+E +          S+  +E + +   +I  +
Sbjct: 135 TK-----QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL 189

Query: 130 VHTKI--AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
             TK    I+G      N     +SGG  KRVS+A  + I+P LL LDEPTSGLD  AA 
Sbjct: 190 GLTKCENTIIG------NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAY 243

Query: 188 EFDKLLIKLRH 198
                L  L  
Sbjct: 244 RLVLTLGSLAQ 254


>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 66/239 (27%), Positives = 122/239 (51%), Gaps = 11/239 (4%)

Query: 12  KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---IP--RV 66
           K + V++L I   +   + ++NL+I    +   IG SG GKS ++R +  +   IP  RV
Sbjct: 3   KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV 62

Query: 67  SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126
            GEV + GE L    G    A    +G++FQ    F +M++++N+   +K +       +
Sbjct: 63  EGEVLLDGEDL-YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121

Query: 127 EHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
           + +V   +    L  E  + +      LSGG  +R+ +ARA+A++PD+L +DEP S LDP
Sbjct: 122 DELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP 181

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
           I+    + L+ +L+     ++ ++TH++       ++ A    +   K G + +I D+ 
Sbjct: 182 ISTLAIEDLINELKQD--YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTE 238


>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
           protein; Provisional.
          Length = 265

 Score = 76.2 bits (187), Expect = 7e-15
 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 18  NLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL 77
            LT+      +  N+ ++I  G    +IG +G GKS L+R +  L+    G V + GEH+
Sbjct: 12  QLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71

Query: 78  NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-----PADLIEHIVHT 132
                K+    + ++G+L Q+      +TVQE ++     H  L       D  E  V  
Sbjct: 72  QHYASKE---VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED--EEAVTK 126

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
            +   G+    A+     LSGG  +R  +A  LA +  ++ LDEPT+ LD     +  +L
Sbjct: 127 AMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185

Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
           L +L    G ++  + HDLN      + +  +++  I+ +G   +IV
Sbjct: 186 LSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232


>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
           protein SapF; Provisional.
          Length = 267

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 61/245 (24%), Positives = 124/245 (50%), Gaps = 20/245 (8%)

Query: 11  EKILSVRNLTIELNNRIIL---------NNINLDILRGEILGVIGSSGTGKSILMRGILG 61
           E +L VRNL+     R              ++  +  G+ L +IG +G+GKS L + + G
Sbjct: 2   ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61

Query: 62  LIPRVSGEVKVLGEHLNLAKGKQNFAF-SAKLGVLFQHGALFSSMTVQENIS----MPIK 116
           +I   SGE+ +    L+      ++++ S ++ ++FQ  +  +S+  ++ IS     P++
Sbjct: 62  MIEPTSGELLIDDHPLHFG----DYSYRSQRIRMIFQDPS--TSLNPRQRISQILDFPLR 115

Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176
            + +L  +  E  +   +  VGL P+ A+  P  L+ G  +R+ LARAL + P ++  DE
Sbjct: 116 LNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADE 175

Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236
             + LD     +   L+++L+   G+S   +T  L  +    ++V V+ +  +++ G+ +
Sbjct: 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTA 235

Query: 237 DIVDS 241
           D++ S
Sbjct: 236 DVLAS 240


>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 74.3 bits (182), Expect = 3e-14
 Identities = 53/205 (25%), Positives = 106/205 (51%), Gaps = 10/205 (4%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG---EV 70
           + +R +    +   +L NIN+D    +I  +IG SG GKS L+R +  +   VSG   E 
Sbjct: 5   IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64

Query: 71  KVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI 129
            VL ++ N+     +      ++G++FQ    F   ++ +N++   +         ++ +
Sbjct: 65  AVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEV 123

Query: 130 VHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
           V   +    L  E  + +      LSGG  +R+ +AR LAI+P+++ +DEP S LDP++ 
Sbjct: 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDL 211
              ++L+ +L+ +  +++  +TH++
Sbjct: 184 MRIEELMQELKQNYTIAI--VTHNM 206


>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
           family.  Type I protein secretion is a system in some
           Gram-negative bacteria to export proteins (often
           proteases) across both inner and outer membranes to the
           extracellular medium. This is one of three proteins of
           the type I secretion apparatus. Targeted proteins are
           not cleaved at the N-terminus, but rather carry signals
           located toward the extreme C-terminus to direct type I
           secretion. This model is related to models TIGR01842 and
           TIGR01846, and to bacteriocin ABC transporters that
           cleave their substrates during export.
          Length = 694

 Score = 73.7 bits (182), Expect = 5e-14
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 34/229 (14%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQN 85
           L+N++L I  GE + +IG  G+GKS L++ +LGL     G V + G     ++ A  ++N
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540

Query: 86  FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
                 +G + Q   LF   T+++NI++         AD  +  +     + G+  E   
Sbjct: 541 ------IGYVPQDPRLFYG-TLRDNIALG-----APYAD--DEEILRAAELAGVT-EFVR 585

Query: 146 LMP-----------FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
             P             LSGG  + V+LARAL  DP +L LDEPTS +D   +EE  +   
Sbjct: 586 RHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD-NRSEE--RFKD 642

Query: 195 KLRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
           +L+  L G ++ ++TH   +L+   +R+ V+    I+ +G    ++++ 
Sbjct: 643 RLKRWLAGKTLVLVTHRT-SLLDLVDRIIVMDNGRIVADGPKDQVLEAL 690


>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
           subunit; Provisional.
          Length = 262

 Score = 73.5 bits (180), Expect = 5e-14
 Identities = 59/236 (25%), Positives = 110/236 (46%), Gaps = 13/236 (5%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI---PRVS 67
           + I+ V  L    N    L+ ++L+I  GE++ ++G SG+GKS L+R + GLI       
Sbjct: 2   QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAG 61

Query: 68  GEVKVLGEHLNLAK--GKQNFAFSAKLGVLFQHGALFSSMTVQENI------SMPI-KEH 118
             +++LG  +       +      A  G +FQ   L + ++V EN+      S P  +  
Sbjct: 62  SHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTC 121

Query: 119 LNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
            +      +      +  VG+    A+     LSGG  +RV++ARAL     ++  DEP 
Sbjct: 122 FSWFTREQKQRALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI 180

Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
           + LDP +A      L  +  + G++V +  H ++  +  C R+  +++  +  +G+
Sbjct: 181 ASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236


>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
           YbbL; Provisional.
          Length = 225

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 12/218 (5%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +L ++N+     +  ILNNI+  +  GE   + G SG GKS L++ +  LI   SG +  
Sbjct: 7   LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMP--IKEHLNLPADLIEHIV 130
            GE ++  K +    +  ++    Q   LF   TV +N+  P  I+     PA  ++ + 
Sbjct: 67  EGEDISTLKPE---IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLE 122

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190
                   LP         +LSGG  +R+SL R L   P +L LDE TS LD       +
Sbjct: 123 R-----FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177

Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKG 228
           +++ +      ++V  +THD +  I+  ++V  +Q   
Sbjct: 178 EIIHRYVREQNIAVLWVTHDKDE-INHADKVITLQPHA 214


>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
           Several bacterial species have enzymes xylose isomerase
           and xylulokinase enzymes for xylose utilization. Members
           of this protein family are the ATP-binding cassette
           (ABC) subunit of the known or predicted high-affinity
           xylose ABC transporter for xylose import. These genes,
           which closely resemble other sugar transport ABC
           transporter genes, typically are encoded near xylose
           utilization enzymes and regulatory proteins. Note that
           this form of the transporter contains two copies of the
           ABC transporter domain (pfam00005).
          Length = 500

 Score = 72.6 bits (178), Expect = 9e-14
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 16/222 (7%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--VSGEV 70
           +L ++ +         L+ I+L++  GE +G+ G +G GKS LM+ + G+ P     GE+
Sbjct: 1   LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA-----DL 125
              G  L  +  +      A + ++ Q   L   ++V ENI +     + LP      + 
Sbjct: 61  YWSGSPLKASNIRDTER--AGIVIIHQELTLVPELSVAENIFL--GNEITLPGGRMAYNA 116

Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185
           +       +  + L  +          GG  + V +A+AL     LL LDEP+S L    
Sbjct: 117 MYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL---T 173

Query: 186 AEEFDKLL--IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225
            +E + LL  I+   + G++   I+H LN + + C+ + VI+
Sbjct: 174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIR 215



 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 64/228 (28%), Positives = 121/228 (53%), Gaps = 20/228 (8%)

Query: 11  EKILSVRNLTI-ELNNRII--LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP-RV 66
           + IL  RNLT  ++ N     +++++  + RGEILGV G  G G++ L++ + G  P + 
Sbjct: 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF 314

Query: 67  SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQ----HGALFSSMTVQENISMPI------K 116
            G V + G+ +++    Q  A  A + ++ +    HG +   + V +NI++ +      K
Sbjct: 315 EGNVFINGKPVDIRNPAQ--AIRAGIAMVPEDRKRHG-IVPILGVGKNITLSVLKSFCFK 371

Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176
             ++  A+L   I+ + I  + +   +  L   +LSGG  ++  LA+ L  +P +L LDE
Sbjct: 372 MRIDAAAEL--QIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE 429

Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224
           PT G+D  A  E  KL+ +L    G+++ +++ +L  ++   +RV VI
Sbjct: 430 PTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVI 476


>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
          Length = 248

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 54/230 (23%)

Query: 1   MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60
           MQLN++        +V         R  L  ++ ++  GEIL ++G +G GKS L+  + 
Sbjct: 1   MQLNDV--------AVST-------R--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMA 43

Query: 61  GLIPRVSGEVKVLG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQEN--ISMPI 115
           GL+P  SG ++  G   E  + A+             L +H A  S    Q+    +MP+
Sbjct: 44  GLLPG-SGSIQFAGQPLEAWSAAE-------------LARHRAYLSQ---QQTPPFAMPV 86

Query: 116 KEHLNL------PADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARA-LAID 168
            ++L L        + +   ++     +GL  +       QLSGG  +RV LA   L + 
Sbjct: 87  FQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-SVNQLSGGEWQRVRLAAVVLQVW 145

Query: 169 PD------LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212
           PD      LL LDEP + LD +A +     L+      G++V M +HDLN
Sbjct: 146 PDINPAGQLLLLDEPMNSLD-VAQQAALDRLLSELCQQGIAVVMSSHDLN 194


>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
            Members of this protein family have two copies of the
           ABC transporter ATP-binding cassette, but are found
           outside the common ABC transporter operon structure that
           features integral membrane permease proteins and
           substrate-binding proteins encoded next to the
           ATP-binding cassette (ABC domain) protein. The member
           protein ChvD from Agrobacterium tumefaciens was
           identified as both a candidate to interact with VirB8,
           based on yeast two-hybrid analysis, and as an apparent
           regulator of VirG. The general function of this protein
           family is unknown.
          Length = 552

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 58/228 (25%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
             + IL +I+L    G  +GV+G +G GKS L+R + G+    +GE +        A G 
Sbjct: 16  PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR-------PAPG- 67

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL---------------------- 121
                  K+G L Q   L  + TV+EN+   + E  +                       
Sbjct: 68  ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALL 121

Query: 122 --PADLIEHIVHTK---------IAIVGL--PPETANLMPFQLSGGMIKRVSLARALAID 168
              A+L E I             IA+  L  PP  A++    LSGG  +RV+L R L   
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK--LSGGERRRVALCRLLLSK 179

Query: 169 PDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD---LNN 213
           PD+L LDEPT+ LD   AE    L   L+   G +V  +THD   L+N
Sbjct: 180 PDMLLLDEPTNHLD---AESVAWLEQHLQEYPG-TVVAVTHDRYFLDN 223



 Score = 66.9 bits (164), Expect = 5e-12
 Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 40/184 (21%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           +K++   NL+    +++++++++  +  G I+GVIG +G GKS L R I G     SG +
Sbjct: 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
           K+ GE + LA   Q+              AL  + TV E IS             ++ I 
Sbjct: 380 KI-GETVKLAYVDQS------------RDALDPNKTVWEEIS-----------GGLDIIQ 415

Query: 131 HTKIAIVGLPPETANLMPF------------QLSGGMIKRVSLARALAIDPDLLFLDEPT 178
             K  +    P  A +  F            QLSGG   RV LA+ L    ++L LDEPT
Sbjct: 416 LGKREV----PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471

Query: 179 SGLD 182
           + LD
Sbjct: 472 NDLD 475


>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
           protein LsrA; Provisional.
          Length = 510

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 27/237 (11%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +L  R+++ + +   +L  I+  +  GE+  ++G +G GKS LM+ I G++P  SG +++
Sbjct: 11  LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70

Query: 73  LGE---HLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENI--SMPIKEHL--NLPA 123
            G     L  AK  Q       LG+    Q   LF +++V+ENI   +P ++     +  
Sbjct: 71  GGNPCARLTPAKAHQ-------LGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ 123

Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
            L        +       E A+    Q+       V + R L  D  +L LDEPT+ L P
Sbjct: 124 LLAALGCQLDLDSSAGSLEVADR---QI-------VEILRGLMRDSRILILDEPTASLTP 173

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
              E     + +L  + G+ +  I+H L  +    +R++V++   I   G  +D+  
Sbjct: 174 AETERLFSRIRELL-AQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229



 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 37/244 (15%)

Query: 8   SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
           +    +L+V +LT E        NI+L++  GEILG+ G  G G++ L   + GL P   
Sbjct: 263 AAGAPVLTVEDLTGEG-----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG 317

Query: 68  GEVKVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENIS------MPIK 116
           G + + G+ +N     Q  A     G+++     Q   L+    +  N+           
Sbjct: 318 GRIMLNGKEINALSTAQRLA----RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW 373

Query: 117 EHLNLPADLIE---HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLF 173
                   ++E     ++ K         T       LSGG  ++V +A+ L   P LL 
Sbjct: 374 IKPARENAVLERYRRALNIKFNHAEQAART-------LSGGNQQKVLIAKCLEASPQLLI 426

Query: 174 LDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
           +DEPT G+D ++A      LI+   +  ++V  I+ DL  +    +RV V      M +G
Sbjct: 427 VDEPTRGVD-VSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLV------MHQG 479

Query: 234 TISD 237
            IS 
Sbjct: 480 EISG 483


>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC.  SufC is part of the SUF
           system, shown in E. coli to consist of six proteins and
           believed to act in Fe-S cluster formation during
           oxidative stress. SufC forms a complex with SufB and
           SufD. SufC belongs to the ATP-binding cassette
           transporter family (pfam00005) but is no longer thought
           to be part of a transporter. The complex is reported as
           cytosolic (PubMed:12554644) or associated with the
           membrane (PubMed:11943156). The SUF system also includes
           a cysteine desulfurase (SufS, enhanced by SufE) and a
           probable iron-sulfur cluster assembly scaffold protein,
           SufA.
          Length = 243

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 21/237 (8%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV---SGEV 70
           L +++L + + ++ IL  +NL + +GEI  ++G +G+GKS L + I G  P     SG +
Sbjct: 1   LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTI 59

Query: 71  KVLGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQE------NISMPIKEHLNLP 122
              G+ L   +  +     A+ G+   FQ+      ++  E      N     +    L 
Sbjct: 60  LFKGQDLLELEPDER----ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLD 115

Query: 123 ADLIEHIVHTKIAIVGLPPETAN-LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181
                 ++  K+A++G+  E  N  +    SGG  KR  + +   ++P L  LDE  SGL
Sbjct: 116 LLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGL 175

Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLN--NLISTCNRVAVIQKKGIMKEGTIS 236
           D  A +   + + +LR     S  +ITH     N I   + V V+    I+K G + 
Sbjct: 176 DIDALKIVAEGINRLR-EPDRSFLIITHYQRLLNYI-KPDYVHVLLDGRIVKSGDVE 230


>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 588

 Score = 70.3 bits (173), Expect = 4e-13
 Identities = 61/272 (22%), Positives = 120/272 (44%), Gaps = 53/272 (19%)

Query: 1   MQLNNIPSQEEKILSVRNLTIELNNRIILN--------NINLDILRGEILGVIGSSGTGK 52
             L +    E+++ S   +TIE  +  IL+         +N  +  G+ + ++G SG GK
Sbjct: 330 TPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGK 389

Query: 53  SILMRGILGLIPRVSGEVKVLGEHL---NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQE 109
           + L+  +LG +P   G +K+ G  L   +    +++ ++   +G   Q+  L    T+++
Sbjct: 390 TSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSW---VG---QNPQLPHG-TLRD 441

Query: 110 NISMP-----------------IKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLS 152
           N+ +                  + E L L    ++  +  + A               LS
Sbjct: 442 NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA--------------GLS 487

Query: 153 GGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212
            G  +R++LARAL     LL LDEPT+ LD  + +   + L     S   +  M+TH L 
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA--SRRQTTLMVTHQLE 545

Query: 213 NLISTCNRVAVIQKKGIMKEGTISDIVDSNDP 244
           +L +  +++ V+Q   I+++G  +++  +   
Sbjct: 546 DL-AQWDQIWVMQDGQIVQQGDYAELSQAGGL 576


>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 69.7 bits (170), Expect = 7e-13
 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 9/224 (4%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +L+  +L     +  +L  +NLD     + G++G++G GKS L   + GL+    G V  
Sbjct: 1   MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
            G+ L+ +K +   A   ++  +FQ     +F +  +  +I+  ++ +L +P   I   V
Sbjct: 61  QGKPLDYSK-RGLLALRQQVATVFQDPEQQIFYT-DIDSDIAFSLR-NLGVPEAEITRRV 117

Query: 131 HTKIAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189
              + +V    +     P Q LS G  KRV++A AL +    L LDEPT+GLDP    + 
Sbjct: 118 DEALTLVD--AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQM 175

Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233
              +I+   + G  V + +HD++ +    + V V+++  I+  G
Sbjct: 176 IA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218


>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 272

 Score = 69.9 bits (171), Expect = 7e-13
 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 24/247 (9%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP-------- 64
           +L+  +L +   +R IL +++L I  G +  ++G +G GKS L++ + G +         
Sbjct: 1   MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60

Query: 65  RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124
           RV+G+V + GE L      +     A L    Q    FS    +E + +    H      
Sbjct: 61  RVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFS---AREIVLLGRYPHARRAGA 117

Query: 125 LIEH---IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALA---------IDPDLL 172
           L      I    +A+ G        +   LSGG + RV  AR LA           P  L
Sbjct: 118 LTHRDGEIAWQALALAGATALVGRDVT-TLSGGELARVQFARVLAQLWPPHDAAQPPRYL 176

Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232
            LDEPT+ LD          + +L     L V  I HD N      +R+A++    I+  
Sbjct: 177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236

Query: 233 GTISDIV 239
           G  +D++
Sbjct: 237 GAPADVL 243


>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
           subunit; Provisional.
          Length = 356

 Score = 69.1 bits (170), Expect = 1e-12
 Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 31/191 (16%)

Query: 32  INLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ-NFAFSA 90
           I+LD+  GE + ++G SG GKS L+R + GL    SGE+ + G  +N  +    + A   
Sbjct: 23  IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIA--- 79

Query: 91  KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM--- 147
              ++FQ+ AL+  M+V+EN++  +K    +P   IE  V     I+ L P    L+   
Sbjct: 80  ---MVFQNYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEP----LLDRK 131

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL-------LIKLRHSL 200
           P +LSGG  +RV++ RA+  +P +   DEP S LD        KL       + +L   L
Sbjct: 132 PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA-------KLRVQMRLEIQRLHRRL 184

Query: 201 GL-SVYMITHD 210
              S+Y +THD
Sbjct: 185 KTTSLY-VTHD 194


>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 16/219 (7%)

Query: 14  LSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           + V ++T+   N    L + +  +  G I  ++G +G+GKS L + ++G +   SG++ +
Sbjct: 7   IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66

Query: 73  LGEHLNLAKGKQNFAF---SAKLGVLFQHGALFSSMTVQENISMPIKEH---LNLPADLI 126
           LG+    A  K   A+   S ++   F        + V++ + M    H   L       
Sbjct: 67  LGQPTRQALQKNLVAYVPQSEEVDWSF-------PVLVEDVVMMGRYGHMGWLRRAKKRD 119

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
             IV   +A V +  E  +    +LSGG  KRV LARA+A    ++ LDEP +G+D    
Sbjct: 120 RQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225
                LL +LR   G ++ + TH+L ++   C+   +++
Sbjct: 179 ARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK 216


>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 574

 Score = 68.7 bits (169), Expect = 2e-12
 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 58/285 (20%)

Query: 3   LNNIPSQEEKI-------LSVRNLTIELNN---------RIILNNINLDILRGEILGVIG 46
           +N I  Q+ ++        +   +++ LNN         + +L  ++L I  GE + ++G
Sbjct: 314 INEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373

Query: 47  SSGTGKSILMRGILGLIPRV----SGEVKVLGEHLNLAKGKQNFAFS-----AKLGVLFQ 97
            +G GKS L    L L+ R      GE+ + G+ +          +S       + V+ Q
Sbjct: 374 RTGCGKSTL----LQLLTRAWDPQQGEILLNGQPIA--------DYSEAALRQAISVVSQ 421

Query: 98  HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPF-------- 149
              LFS+ T+++N+ +          +  +  +   +  VGL     +            
Sbjct: 422 RVHLFSA-TLRDNLLLAA-------PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473

Query: 150 -QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
            QLSGG  +R+ +ARAL  D  LL LDEPT GLD     +  +LL    H+   +V MIT
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL--AEHAQNKTVLMIT 531

Query: 209 HDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYFNRF 253
           H L  L    +R+ V+    I+++GT  +++ +          R 
Sbjct: 532 HRLTGLEQF-DRICVMDNGQIIEQGTHQELL-AQQGRYYQLKQRL 574


>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 204

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 12/197 (6%)

Query: 14  LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           L  RNL  E + RI+ + ++  +  GE++ + G +G GK+ L+R + GL    +GEV   
Sbjct: 2   LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ 61

Query: 74  GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133
           GE +     +Q   +   L  L     + + +T  EN+    + H     + +       
Sbjct: 62  GEPIR----RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEA---- 113

Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193
           +A VGL     ++   QLS G  +RV+LAR       L  LDEP + +D       + LL
Sbjct: 114 LAQVGL-AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172

Query: 194 IKLRH-SLGLSVYMITH 209
              +H   G  V + TH
Sbjct: 173 --AQHAEQGGMVILTTH 187


>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
           transporter, peptidase/ATP-binding protein.  This
           protein describes an multidomain ABC transporter subunit
           that is one of three protein families associated with
           some regularity with a distinctive family of putative
           bacteriocins. It includes a bacteriocin-processing
           peptidase domain at the N-terminus. Model TIGR03793
           describes a conserved propeptide region for this
           bacteriocin family, unusual because it shows obvious
           homology a region of the enzyme nitrile hydratase up to
           the classic Gly-Gly cleavage motif. This family is
           therefore predicted to be a subunit of a bacteriocin
           processing and export system characteristic to this
           system that we designate NHPM, Nitrile Hydratase
           Propeptide Microcin.
          Length = 710

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 36/247 (14%)

Query: 17  RNLTIELN--NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74
           RN+T   +     ++ N +L +  G+ + ++G SG+GKS + + + GL    SGE+   G
Sbjct: 481 RNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG 540

Query: 75  EHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-----SMPIKEHLNLPADLIEH 128
                + +       +  + ++ Q   LF   TV++N+     ++P  + +    D   H
Sbjct: 541 IPREEIPRE----VLANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIH 595

Query: 129 IVHTKIAIVGLPPE--------TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
            V     I   P           ANL     SGG  +R+ +ARAL  +P +L LDE TS 
Sbjct: 596 DV-----ITSRPGGYDAELAEGGANL-----SGGQRQRLEIARALVRNPSILILDEATSA 645

Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
           LDP   +  D     LR   G +  ++ H L+  I  C+ + V+++  +++ GT  ++  
Sbjct: 646 LDPETEKIIDD---NLRRR-GCTCIIVAHRLST-IRDCDEIIVLERGKVVQRGTHEELWA 700

Query: 241 SNDPWIR 247
               + R
Sbjct: 701 VGGAYAR 707


>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. 
          Length = 711

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 38/235 (16%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG------EHLN 78
           +  +L  +   +  GE++ ++G SG+GKS +   +  L     G+V + G      +H  
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552

Query: 79  LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-----SMPIKEHLNLPA-----DLIEH 128
           L +         ++ ++ Q   LFS  +V+ENI       P +E +         D I  
Sbjct: 553 LHR---------QVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIME 602

Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188
             +     VG   E  +    QLSGG  +R+++ARAL   P +L LDE TS LD     E
Sbjct: 603 FPNGYDTEVG---EKGS----QLSGGQKQRIAIARALVRKPRVLILDEATSALDA----E 651

Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
            ++LL + R     +V +I H L + +   +++ V++K  +++ GT   +++   
Sbjct: 652 CEQLLQESRSRASRTVLLIAHRL-STVERADQILVLKKGSVVEMGTHKQLMEDQG 705


>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 237

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 58/234 (24%), Positives = 114/234 (48%), Gaps = 24/234 (10%)

Query: 10  EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS-G 68
           E+ +LS   ++        L+ ++L I +GEI+ +IG++G GK+ L+ G L   PR + G
Sbjct: 2   EKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLL-GTLCGDPRATSG 60

Query: 69  EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--------PIKEHLN 120
            +   G+  ++   +        + ++ +   +FS MTV+EN++M          +E + 
Sbjct: 61  RIVFDGK--DITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK 118

Query: 121 LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
              +L   +   +I   G            +SGG  + +++ RAL   P LL LDEP+ G
Sbjct: 119 WVYELFPRLHERRIQRAG-----------TMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167

Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
           L PI  ++    + +LR   G++++++  + N  +   +R  V++   ++ E T
Sbjct: 168 LAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220


>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
           Reviewed.
          Length = 556

 Score = 65.5 bits (161), Expect = 1e-11
 Identities = 67/227 (29%), Positives = 95/227 (41%), Gaps = 58/227 (25%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84
            + IL +I+L    G  +GV+G +G GKS L+R + G+     GE +        A G  
Sbjct: 19  KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR-------PAPG-- 69

Query: 85  NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-------------P--------- 122
                 K+G L Q   L    TV+EN+   + E                 P         
Sbjct: 70  -----IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAA 124

Query: 123 --ADLIEHIVH-------TKIAI----VGLPPETANLMPFQLSGGMIKRVSLARALAIDP 169
              +L E I         +++ I    +  PP  A +   +LSGG  +RV+L R L   P
Sbjct: 125 EQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT--KLSGGERRRVALCRLLLEKP 182

Query: 170 DLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD---LNN 213
           D+L LDEPT+ LD   AE    L   L    G +V  +THD   L+N
Sbjct: 183 DMLLLDEPTNHLD---AESVAWLEQFLHDYPG-TVVAVTHDRYFLDN 225



 Score = 58.6 bits (143), Expect = 1e-09
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 40/183 (21%)

Query: 12  KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
           K++   NL+    +R+++++++  +  G I+G+IG +G GKS L + I G     SG +K
Sbjct: 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK 382

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
           + GE + LA   Q+              AL  + TV E IS             ++ I  
Sbjct: 383 I-GETVKLAYVDQS------------RDALDPNKTVWEEIS-----------GGLDIIKV 418

Query: 132 TKIAIVGLPPETANLMPF------------QLSGGMIKRVSLARALAIDPDLLFLDEPTS 179
               I    P  A +  F             LSGG   R+ LA+ L    ++L LDEPT+
Sbjct: 419 GNREI----PSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474

Query: 180 GLD 182
            LD
Sbjct: 475 DLD 477


>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
            This protein is related to a Proteobacterial ATP
           transporter that exports lipid A and to eukaryotic
           P-glycoproteins.
          Length = 576

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 20/226 (8%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84
           ++  L+ +NL +  GE + ++G SG GKS L + +L      SG + + G  L      +
Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411

Query: 85  NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA-----IVGL 139
                A++ ++ Q   LF++ +V ENI           A   E     + A     I  L
Sbjct: 412 ---LRARMALVPQDPVLFAA-SVMENIRYG-----RPDATDEEVEAAARAAHAHEFISAL 462

Query: 140 PPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL 196
           P      +      LSGG  +R+++ARA+  D  +L LDE TS LD  + +   + L  L
Sbjct: 463 PEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL 522

Query: 197 RHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
               G +  +I H L  ++   +R+ V+ +  I+ +GT ++++   
Sbjct: 523 --MKGRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHAELIAKG 565


>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter.  This
           model describes ABC-type bacteriocin transporter. The
           amino terminal domain (pfam03412) processes the
           N-terminal leader peptide from the bacteriocin while
           C-terminal domains resemble ABC transporter membrane
           protein and ATP-binding cassette domain. In general,
           bacteriocins are agents which are responsible for
           killing or inhibiting the closely related species or
           even different strains of the same species. Bacteriocins
           are usually encoded by bacterial plasmids. Bacteriocins
           are named after the species and hence in literature one
           encounters various names e.g., leucocin from Leuconostic
           geldium; pedicocin from Pedicoccus acidilactici; sakacin
           from Lactobacillus sake etc.
          Length = 708

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 18/225 (8%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGK 83
              IL++I+L I       ++G SG+GKS L + ++G     SGE+ + G  L ++ +  
Sbjct: 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH- 544

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH---IVHTKIAIVGLP 140
                   +  L Q   +FS  ++ EN+ +  KE  N+  D I     I   K  I  +P
Sbjct: 545 ---TLRQFINYLPQEPYIFSG-SILENLLLGAKE--NVSQDEIWAACEIAEIKDDIENMP 598

Query: 141 ---PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197
                  +     +SGG  +R++LARAL  D  +L LDE TS LD I  ++    L+ L+
Sbjct: 599 LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658

Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
                ++  + H L ++    +++ V+    I+++G+  +++D N
Sbjct: 659 DK---TIIFVAHRL-SVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
           protein. 
          Length = 1394

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 28/204 (13%)

Query: 10  EEKILSVRNLT----IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR 65
            E I   RNLT    I+   R+ILNN++  +  G +  ++G+SG GK+ L+     L  R
Sbjct: 756 GEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNV---LAER 812

Query: 66  VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI----------SMPI 115
           V+  V   G+ L   +   + +F   +G + Q      + TV+E++          S+  
Sbjct: 813 VTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSK 871

Query: 116 KEHLNLPADLIEHIVHTKI--AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLL- 172
            E +    ++I+ +       A+VG+P E        L+    KR+++   L   P LL 
Sbjct: 872 SEKMEYVEEVIKLLEMESYADAVVGVPGEG-------LNVEQRKRLTIGVELVAKPKLLL 924

Query: 173 FLDEPTSGLDPIAAEEFDKLLIKL 196
           FLDEPTSGLD   A    KL+ KL
Sbjct: 925 FLDEPTSGLDSQTAWSICKLMRKL 948



 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 31/187 (16%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP----RVSGEVKVLGEHLNLAKGK 83
           IL  ++  I  GE+  V+G  G+G S L++ I          V G +   G  +   + K
Sbjct: 76  ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG--ITPEEIK 133

Query: 84  QNF----AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA---------DLIEHIV 130
           +++     ++A+  V F H      +TV E +    +     P          +  +HI 
Sbjct: 134 KHYRGDVVYNAETDVHFPH------LTVGETLDFAAR--CKTPQNRPDGVSREEYAKHIA 185

Query: 131 HTKIAIVGLP----PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
              +A  GL      +  N     +SGG  KRVS+A A      +   D  T GLD   A
Sbjct: 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245

Query: 187 EEFDKLL 193
            EF + L
Sbjct: 246 LEFIRAL 252


>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
           component/ATP-binding component; Provisional.
          Length = 547

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 28/208 (13%)

Query: 12  KILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
           + L +RN+T    +N   +  INL I RGE+L +IG +G+GKS L   + GL    SGE+
Sbjct: 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380

Query: 71  KVLGEHLNLAKGKQNFA--FSAKLGVLFQHGALFSSMTVQENISMPIK------EHLNLP 122
            + G+ +  A+  +++   FSA    +F    LF  +   E             E L + 
Sbjct: 381 LLDGKPVT-AEQPEDYRKLFSA----VFTDFHLFDQLLGPEGKPANPALVEKWLERLKMA 435

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
             L   +   +I+         NL   +LS G  KR++L  ALA + D+L LDE  +  D
Sbjct: 436 HKL--ELEDGRIS---------NL---KLSKGQKKRLALLLALAEERDILLLDEWAADQD 481

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHD 210
           P    EF ++L+ L   +G +++ I+HD
Sbjct: 482 PHFRREFYQVLLPLLQEMGKTIFAISHD 509


>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
          Length = 1622

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 22/221 (9%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS-GEVKVLGEHLNLAKG 82
             R  L+NINLD+  G ++ ++GS+G GK+ L+  +LG +P  S   V + G    + + 
Sbjct: 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQV 687

Query: 83  KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142
              F  + +  +LF  G+ F     +  I +   +H     DL+     T+I   G+   
Sbjct: 688 SWIFNATVRDNILF--GSPFDPERYERAIDVTALQH---DLDLLPGGDLTEIGERGV--- 739

Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLI-KLRHSL 200
                   +SGG  +RVS+ARA+  + D+   D+P S LD  +  + FDK +  +LR   
Sbjct: 740 -------NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGK- 791

Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
             +  ++T+ L+ L S  +R+ ++ +  I +EGT  ++ ++
Sbjct: 792 --TRVLVTNQLHFL-SQVDRIILVHEGMIKEEGTYEELSNN 829



 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 43/216 (19%)

Query: 28   ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQ 84
            +L+ ++ +I   E +G++G +G GKS ++  +  ++    G + + G       L   ++
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313

Query: 85   NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI--VHTKIAI----VG 138
                   LG++ Q   LFS  TV+ N+  P  EH +  ADL E +   H K  I    +G
Sbjct: 1314 V------LGIIPQAPVLFSG-TVRFNLD-PFNEHND--ADLWESLERAHLKDVIRRNSLG 1363

Query: 139  LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD--------PIAAEEFD 190
            L  E +       S G  + +SLARAL     +L LDE T+ +D            EEF 
Sbjct: 1364 LDAEVSEAGE-NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 1422

Query: 191  K--LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224
               +LI            I H LN +I  C+R+ V+
Sbjct: 1423 SCTMLI------------IAHRLNTIID-CDRILVL 1445


>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
           MsbA.  This family consists of a single polypeptide
           chain transporter in the ATP-binding cassette (ABC)
           transporter family, MsbA, which exports lipid A. It may
           also act in multidrug resistance. Lipid A, a part of
           lipopolysaccharide, is found in the outer leaflet of the
           outer membrane of most Gram-negative bacteria. Members
           of this family are restricted to the Proteobacteria
           (although lipid A is more broadly distributed) and often
           are clustered with lipid A biosynthesis genes.
          Length = 571

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 69/252 (27%), Positives = 111/252 (44%), Gaps = 47/252 (18%)

Query: 14  LSVRNLTIEL--NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----S 67
           +  RN+T      +R  L++I+L I  GE + ++G SG+GKS L+     LIPR     S
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVN----LIPRFYEPDS 386

Query: 68  GEVKVLG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI--------SMPIK 116
           G++ + G       LA  ++  A  +      Q   LF+  T+  NI             
Sbjct: 387 GQILLDGHDLADYTLASLRRQVALVS------QDVVLFND-TIANNIAYGRTEQADRAEI 439

Query: 117 EHLNLPADLIEHI------VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPD 170
           E     A   + +      + T I   G+           LSGG  +R+++ARAL  D  
Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGV----------LLSGGQRQRLAIARALLKDAP 489

Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIM 230
           +L LDE TS LD  +       L +L    G +  +I H L+  I   +R+ V+    I+
Sbjct: 490 ILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLST-IEKADRIVVMDDGRIV 546

Query: 231 KEGTISDIVDSN 242
           + GT ++++  N
Sbjct: 547 ERGTHNELLARN 558


>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
            Members of this family are the PhnL protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated C-P lysase complex. This protein
           (PhnL) and the adjacent-encoded PhnK (TIGR02323)
           resemble transporter ATP-binding proteins but are
           suggested, based on mutatgenesis studies, to be part of
           this C-P lyase complex rather than part of a transporter
           per se.
          Length = 224

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 21/198 (10%)

Query: 25  NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV--LGEHLNLAKG 82
              +L N++L +  GE + + G SG GKS L++ +       SG + V   G  ++LA+ 
Sbjct: 20  RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79

Query: 83  ---------KQNFAF-SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
                    ++   + S  L V+ +  AL           +P +       +L+  +   
Sbjct: 80  SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARL--- 136

Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192
                 +P    +L P   SGG  +RV++AR    D  +L LDEPT+ LD    +   +L
Sbjct: 137 -----NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191

Query: 193 LIKLRHSLGLSVYMITHD 210
           + + +   G ++  I HD
Sbjct: 192 IAEAKAR-GAALIGIFHD 208


>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
          Length = 635

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 50/214 (23%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI----------------------PR 65
           +L+N  L I   E + ++G +G GKS LM+ + G +                      PR
Sbjct: 18  LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77

Query: 66  ---------VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK 116
                    V+  ++   E+L     K+    S  +        L     +QE +     
Sbjct: 78  NVEGTVYDFVAEGIEEQAEYL-----KRYHDISHLVETDPSEKNLNELAKLQEQL----- 127

Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176
           +H NL    +E+ ++  +A +GL P+        LSGG +++ +L RAL  +PD+L LDE
Sbjct: 128 DHHNLW--QLENRINEVLAQLGLDPDA---ALSSLSGGWLRKAALGRALVSNPDVLLLDE 182

Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210
           PT+ LD    E  +  L   + S+   ++ I+HD
Sbjct: 183 PTNHLDIETIEWLEGFLKTFQGSI---IF-ISHD 212



 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 74/196 (37%)

Query: 16  VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75
           + N+  +++ + ++ + +  + RG+ + +IG +G GK+ L++ +LG +   SG +   G 
Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT 380

Query: 76  HL--------------------NLAKGKQNFAFSAK----LGVL--FQHGALFS---SMT 106
            L                    NLA+GKQ    + +    LG L  F    LF    +MT
Sbjct: 381 KLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDF----LFHPKRAMT 436

Query: 107 VQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALA 166
                  P+K                                  LSGG   R+ LAR   
Sbjct: 437 -------PVK---------------------------------ALSGGERNRLLLARLFL 456

Query: 167 IDPDLLFLDEPTSGLD 182
              +LL LDEPT+ LD
Sbjct: 457 KPSNLLILDEPTNDLD 472


>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
           Provisional.
          Length = 352

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 41/233 (17%)

Query: 31  NINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL--------NLAKG 82
            +NL +    I  + G SG GK+ L+  I GL     G + VL   +         L   
Sbjct: 16  TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGICLPPE 74

Query: 83  KQNFAFSAKLGVLFQHGALFSSMTVQENI------SMPIKEHLNLPADL--IEHIVHTKI 134
           K+      ++G +FQ   LF    V+ N+      SM      +    L  IE ++    
Sbjct: 75  KR------RIGYVFQDARLFPHYKVRGNLRYGMAKSMV--AQFDKIVALLGIEPLL---- 122

Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
                     +  P  LSGG  +RV++ RAL   P+LL +DEP + LD     E    L 
Sbjct: 123 ----------DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLE 172

Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN--DPW 245
           +L   + + +  ++H L+ ++   +RV V+++  +   G + ++  S+   PW
Sbjct: 173 RLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRPW 225


>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
           Provisional.
          Length = 588

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 38/236 (16%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----SGEVKVLGEH--- 76
           N+R  + +++ +   G+ + ++G +G GKS L    + L+ RV    SG + + G     
Sbjct: 346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTL----INLLQRVFDPQSGRILIDGTDIRT 401

Query: 77  LNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM----PIKEHLNLPA------DLI 126
           +  A  ++N      + V+FQ   LF+  ++++NI +       E +   A      D I
Sbjct: 402 VTRASLRRN------IAVVFQDAGLFNR-SIEDNIRVGRPDATDEEMRAAAERAQAHDFI 454

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
           E        +VG   E       QLSGG  +R+++ARAL  DP +L LDE TS LD    
Sbjct: 455 ERKPDGYDTVVG---ERGR----QLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507

Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
            +    L +L    G + ++I H L+  +   +R+ V     +++ G+  ++V   
Sbjct: 508 AKVKAALDELMK--GRTTFIIAHRLST-VRNADRILVFDNGRVVESGSFDELVARG 560


>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
           ATP-binding protein; Provisional.
          Length = 491

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 66/256 (25%), Positives = 117/256 (45%), Gaps = 41/256 (16%)

Query: 5   NIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64
           N P   E IL VRNLT  L    I  +++ D+ +GEILG+ G  G  ++ ++  + G+  
Sbjct: 244 NKP--GEVILEVRNLT-SLRQPSI-RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE 299

Query: 65  RVSGEVKVLGEHLNLAKG----KQNFAFS----------AKLGVLFQHGALFSSMTVQEN 110
           + +G + + G+ +N           FA            A L + F   +L S++   +N
Sbjct: 300 KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN--SLISNIRNYKN 357

Query: 111 ISMPIKEHLNLPADLIEHIVHTKIAI----VGLPPETANLMPFQLSGGMIKRVSLARALA 166
             + + ++  + +D       T+  I    V  P     +    LSGG  ++V + R L 
Sbjct: 358 -KVGLLDNSRMKSD-------TQWVIDSMRVKTPGHRTQIG--SLSGGNQQKVIIGRWLL 407

Query: 167 IDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226
             P++L LDEPT G+D  A  E  +L+ +L       + +I+ ++  L+   +R+ V   
Sbjct: 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILV--- 463

Query: 227 KGIMKEGTISDIVDSN 242
              M  G ++ IVD+ 
Sbjct: 464 ---MSNGLVAGIVDTK 476



 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 43/204 (21%), Positives = 90/204 (44%), Gaps = 16/204 (7%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L+N+NL +    I  ++G +G GKS L++ + G+  + SG +   G+ ++    K+  A 
Sbjct: 14  LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE--AL 71

Query: 89  SAKLGVLFQHGALFSSMTVQENISM---PIK----EHLNLPADLIEHIVHTKIAIVGLPP 141
              + ++ Q   L    +V +N+ +   P K    +   +  D         I I   P 
Sbjct: 72  ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDID--PR 129

Query: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201
                    LS   ++ + +A+A + +  ++ +DEPTS L          ++ KL+   G
Sbjct: 130 AKVA----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-G 184

Query: 202 LSVYMITHDLNNLISTCNRVAVIQ 225
             +  I+H +  +   C+ + +++
Sbjct: 185 CGIVYISHKMEEIFQLCDEITILR 208


>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 569

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 48/242 (19%)

Query: 15  SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74
           ++R  T    +   L N+N  +  G++LG+ G +G+GKS L    L LI R         
Sbjct: 317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTL----LSLIQR--------- 363

Query: 75  EHLNLAKGKQNF-----------AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123
            H ++++G   F           ++ ++L V+ Q   LFS  TV  NI++      +   
Sbjct: 364 -HFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIAL---GRPDATQ 418

Query: 124 DLIEHI-----VHTKIAIVGLPP--ETA----NLMPFQLSGGMIKRVSLARALAIDPDLL 172
             IEH+     VH  I  + LP   +T      +M   LSGG  +R+S+ARAL ++ ++L
Sbjct: 419 QEIEHVARLASVHDDI--LRLPQGYDTEVGERGVM---LSGGQKQRISIARALLLNAEIL 473

Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232
            LD+  S +D     +    L +     G +V +  H L+ L +  + + V+Q   I + 
Sbjct: 474 ILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSAL-TEASEILVMQHGHIAQR 530

Query: 233 GT 234
           G 
Sbjct: 531 GN 532


>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
           Provisional.
          Length = 549

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 37/230 (16%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           LNNI+ ++  GEI+G+IG +G+GKS L   I G+     G V + G    +A        
Sbjct: 40  LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAIS------ 93

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148
                       L   +T  ENI +     + L  + I+ I+   I       E A++  
Sbjct: 94  ----------SGLNGQLTGIENIELK-GLMMGLTKEKIKEIIPEII-------EFADIGK 135

Query: 149 F------QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF-DKLLIKLRH--S 199
           F        S GM  R+  A ++ I+PD+L +DE  S    +  + F  K L K+     
Sbjct: 136 FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALS----VGDQTFTKKCLDKMNEFKE 191

Query: 200 LGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSY 249
            G +++ I+H L+ + S C +   +    + + G I ++VD  D +++ Y
Sbjct: 192 QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKY 241


>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 214

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 11/177 (6%)

Query: 7   PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66
                 +L+   L    N   +   ++  +  GE L V G +G GK+ L+R + GL+   
Sbjct: 5   LHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE 64

Query: 67  SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126
           SG++++ G+        +  A+   L        L + ++  EN+      H        
Sbjct: 65  SGQIQIDGKTATRGDRSRFMAYLGHL------PGLKADLSTLENLHFLCGLHGRRA---- 114

Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
           + +  + +AIVGL      L+  QLS G  KR++LAR       L  LDEP + LD 
Sbjct: 115 KQMPGSALAIVGLAGYEDTLVR-QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170


>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
           regulator (CFTR).  The model describes the cystis
           fibrosis transmembrane conductor regulator (CFTR) in
           eukaryotes. The principal role of this protein is
           chloride ion conductance. The protein is predicted to
           consist of 12 transmembrane domains. Mutations or
           lesions in the genetic loci have been linked to the
           aetiology of asthma, bronchiectasis, chronic obstructive
           pulmonary disease etc. Disease-causing mutations have
           been studied by 36Cl efflux assays in vitro cell
           cultures and electrophysiology, all of which point to
           the impairment of chloride channel stability and not the
           biosynthetic processing per se.
          Length = 1490

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 34/179 (18%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILG-LIP-----RVSGEVKVLGEHLNLAK 81
           +L NI+  + +G++L V GS+G+GKS L+  I+G L P     + SG +    +   +  
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMP 500

Query: 82  G--KQNFAFSAKLGVLFQHGALFSSMTVQENIS-MPIKEHLNLPADLIEHIVHTKIAIVG 138
           G  K N  F       +++ ++  +  ++E+I+  P K+   L    I            
Sbjct: 501 GTIKDNIIFGLSYDE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGI------------ 547

Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE-FDKLLIKL 196
                       LSGG   R+SLARA+  D DL  LD P + LD +  +E F+  L KL
Sbjct: 548 -----------TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595



 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 27/199 (13%)

Query: 7    PSQEEKILSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64
            PS  +  + V+ LT +     R +L +++  +  G+ +G++G +G+GKS L+  +L L+ 
Sbjct: 1213 PSGGQ--MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL- 1269

Query: 65   RVSGEVKVLG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121
               GE+++ G     + L   ++ F      GV+ Q   +FS  T ++N+  P ++  + 
Sbjct: 1270 STEGEIQIDGVSWNSVTLQTWRKAF------GVIPQKVFIFSG-TFRKNLD-PYEQWSDE 1321

Query: 122  PADLIEHIVHTKIAIVGLPPETANLMPFQL-------SGGMIKRVSLARALAIDPDLLFL 174
                +   V  K  I   P +    + F L       S G  + + LAR++     +L L
Sbjct: 1322 EIWKVAEEVGLKSVIEQFPDK----LDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377

Query: 175  DEPTSGLDPIAAEEFDKLL 193
            DEP++ LDP+  +   K L
Sbjct: 1378 DEPSAHLDPVTLQIIRKTL 1396


>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
          Length = 1560

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 25/166 (15%)

Query: 22  ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK 81
           EL  +++L ++++ + RG++  V+G++G+GKS L++ +L       G V         A+
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------WAE 720

Query: 82  GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI----VHTKIAIV 137
             ++ A+     V  Q  A   + TV+ NI    +E     A L + +    +   +A +
Sbjct: 721 --RSIAY-----VPQQ--AWIMNATVRGNILFFDEED---AARLADAVRVSQLEADLAQL 768

Query: 138 GLPPETA-NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           G   ET        LSGG   RVSLARA+  + D+  LD+P S LD
Sbjct: 769 GGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814



 Score = 32.8 bits (75), Expect = 0.089
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 39/176 (22%)

Query: 27   IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL---NLAKGK 83
            ++L  ++  I   E +G++G +G+GKS L+   + ++    GE++V G  +    L + +
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383

Query: 84   QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143
            + F+   +  VLF         TV++N+  P  E     A+     V   + +VGL    
Sbjct: 1384 RQFSMIPQDPVLFDG-------TVRQNVD-PFLE--ASSAE-----VWAALELVGLRERV 1428

Query: 144  ANLMPFQLSGGMIKRV---------------SLARA-LAIDPDLLFLDEPTSGLDP 183
            A+      S G+  RV                +ARA L      + +DE T+ +DP
Sbjct: 1429 AS-----ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP 1479


>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
            (MRP).  This model describes multi drug
            resistance-associated protein (MRP) in eukaryotes. The
            multidrug resistance-associated protein is an integral
            membrane protein that causes multidrug resistance when
            overexpressed in mammalian cells. It belongs to ABC
            transporter superfamily. The protein topology and
            function was experimentally demonstrated by epitope
            tagging and immunofluorescence. Insertion of tags in the
            critical regions associated with drug efflux, abrogated
            its function. The C-terminal domain seem to highly
            conserved.
          Length = 1522

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 27/224 (12%)

Query: 27   IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK-GKQN 85
            ++L +IN+ I  GE +G++G +G GKS L  G+  +     GE+ + G  LN+AK G  +
Sbjct: 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG--LNIAKIGLHD 1357

Query: 86   FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145
              F  K+ ++ Q   LFS  +++ N+  P  ++ +        + H K  +  LP +   
Sbjct: 1358 LRF--KITIIPQDPVLFSG-SLRMNLD-PFSQYSDEEVWWALELAHLKTFVSALPDK--- 1410

Query: 146  LMPFQ-------LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL---IK 195
             +  +       LS G  + V LARAL     +L LDE T+ +D     E D L+   I+
Sbjct: 1411 -LDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD----LETDNLIQSTIR 1465

Query: 196  LRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
             +     +V  I H LN ++    RV V+ K  + + G  S+++
Sbjct: 1466 TQFE-DCTVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNLL 1507



 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 27/213 (12%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           LN I   I  G ++ V+G  G GKS L+  +L  + +V G V + G    + +       
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL--IEHIVHTKIAIVGLPPETANL 146
           S +  +LF          + E     + E   L  DL  +     T+I   G+       
Sbjct: 714 SLRENILFGK-------ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGV------- 759

Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLIKLRHSLGLSVY 205
               LSGG  +RVSLARA+  + D+   D+P S +D  +    F+ ++         +  
Sbjct: 760 ---NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRI 816

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           ++TH     IS   +V VI    +M  G IS++
Sbjct: 817 LVTHG----ISYLPQVDVII---VMSGGKISEM 842


>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
           Provisional.
          Length = 638

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 23/194 (11%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
            +RIIL++I L+++ G  +G++G +G GKS L++ + G +  VSGE+        LAKG 
Sbjct: 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-------GLAKG- 374

Query: 84  QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143
                  KLG   QH   F  +   E+   P++    L    +E  +   +   G   + 
Sbjct: 375 ------IKLGYFAQHQLEF--LRADES---PLQHLARLAPQELEQKLRDYLGGFGFQGDK 423

Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203
                 + SGG   R+ LA  +   P+LL LDEPT+ LD    +   + LI    +L   
Sbjct: 424 VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGAL--- 480

Query: 204 VYMITHDLNNLIST 217
             +++HD + L ST
Sbjct: 481 -VVVSHDRHLLRST 493



 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
           SGG   R++LA+AL    DLL LDEPT+ LD  A    +K L   + +L L    I+HD 
Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLIL----ISHDR 206

Query: 212 NNLISTCNRVAVIQKKGIMK 231
           + L    +++  I+++ + +
Sbjct: 207 DFLDPIVDKIIHIEQQSLFE 226



 Score = 29.0 bits (65), Expect = 1.3
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 19 LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILM 56
          L I    R++L+N    I  G+ +G++G +G GKS L+
Sbjct: 7  LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL 44


>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
          Length = 1495

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 56/216 (25%), Positives = 107/216 (49%), Gaps = 22/216 (10%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV-SGEVKVLGEHLNLAKGKQNFA 87
           L++INL+I  G ++ ++G +G GK+ L+  +LG +    +  V + G    + +    F 
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692

Query: 88  FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147
            + +  +LF  G+ F S      I +   +H     DL+     T+I   G+        
Sbjct: 693 ATVRENILF--GSDFESERYWRAIDVTALQH---DLDLLPGRDLTEIGERGV-------- 739

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLIKLRHSL-GLSVY 205
              +SGG  +RVS+ARA+  + D+   D+P S LD  +A + FD     ++  L G +  
Sbjct: 740 --NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC---MKDELKGKTRV 794

Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
           ++T+ L + +   +R+ ++ +  I +EGT +++  S
Sbjct: 795 LVTNQL-HFLPLMDRIILVSEGMIKEEGTFAELSKS 829



 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 28/227 (12%)

Query: 28   ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87
            +L+ ++  +   E +GV+G +G GKS ++  +  ++    G + +  +  ++AK    F 
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMI--DDCDVAK----FG 1304

Query: 88   FS---AKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE--HIVHTKIAI----VG 138
             +     L ++ Q   LFS  TV+ NI  P  EH +  ADL E     H K  I     G
Sbjct: 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNID-PFSEHND--ADLWEALERAHIKDVIDRNPFG 1360

Query: 139  LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK-LR 197
            L  E +       S G  + +SLARAL     +L LDE T+ +D       D L+ + +R
Sbjct: 1361 LDAEVSEGGE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDV----RTDSLIQRTIR 1415

Query: 198  HSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
                  ++ +I H LN +I  C+++ V+    +++  +  +++ S D
Sbjct: 1416 EEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELL-SRD 1460


>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
           Provisional.
          Length = 582

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 39/232 (16%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----SGEVKVLGEHLN---LAK 81
           L NIN  I  G+ + ++G SG+GKS     I  L+ R      GE+ + G  L    LA 
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKST----IANLLTRFYDIDEGEILLDGHDLRDYTLAS 414

Query: 82  GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEH-----------LNLPADLIEHIV 130
            +   A      ++ Q+  LF+  T+  NI+    E            +    D I  + 
Sbjct: 415 LRNQVA------LVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190
           +    ++G   E   L    LSGG  +R+++ARAL  D  +L LDE TS LD  +     
Sbjct: 468 NGLDTVIG---ENGVL----LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520

Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242
             L +L+ +   +  +I H L+  I   + + V++   I++ GT ++++  N
Sbjct: 521 AALDELQKN--RTSLVIAHRLST-IEKADEILVVEDGEIVERGTHAELLAQN 569


>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
           ATP-binding protein; Provisional.
          Length = 330

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 25/77 (32%), Positives = 46/77 (59%)

Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           P++L+ G  ++V +A ALA  P LL  DEPT+ ++P    +  +LL +L  +   ++ +I
Sbjct: 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI 215

Query: 208 THDLNNLISTCNRVAVI 224
           +HDL  L    +++ V+
Sbjct: 216 SHDLQMLSQWADKINVL 232



 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 13 ILSVRNLTIELNNR----IILNNINLDILRGEILGVIGSSGTGKSILMRGILGL 62
          +L +RNLTIE          ++ +++ +  GEI G++G SG+GKS++ + I G+
Sbjct: 3  LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56


>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
          Length = 718

 Score = 53.3 bits (128), Expect = 7e-08
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 46/222 (20%)

Query: 12  KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR-----GILGLIPR- 65
           K + + N +I +  R ++ + ++ +  G   G++G +GTGK+  +R      I G IP+ 
Sbjct: 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG-IPKN 234

Query: 66  -----VSGEV-------------------KVLGEHLNLAKGKQNFAFSAKLGVLFQHGAL 101
                V  EV                   ++L E   L   ++   F  + G     G  
Sbjct: 235 CQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETG----KGKG 290

Query: 102 FSSMTVQENISMPIKEHLN--------LPADLIEHIVHTKIAIVGLPPETANLMPFQLSG 153
            +   V ++    + + L         + A   E    + +A +   PE         SG
Sbjct: 291 ANKDGVDKD---AVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSG 347

Query: 154 GMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195
           G   R++LARAL I+PDLL LDEPT+ LD  A    +  L+K
Sbjct: 348 GWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK 389



 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 30/193 (15%)

Query: 27  IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF 86
           ++  N+N  I     + ++G +G GKS +++ I G +   SG V                
Sbjct: 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV---------------- 566

Query: 87  AF-SAKLGVLFQHGALFSSMTVQ--ENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143
            F SAK+ +     A+FS   V   +  S P+   +     + E  +   +   G+    
Sbjct: 567 -FRSAKVRM-----AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL 620

Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203
           A    + LSGG   RV+ A+     P +L LDEP++ LD  A E   + L+  +      
Sbjct: 621 ALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQG----G 676

Query: 204 VYMITHDLNNLIS 216
           V M++HD  +LIS
Sbjct: 677 VLMVSHD-EHLIS 688


>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
          Length = 1470

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 38/168 (22%)

Query: 39   GEILGVIGSSGTGKSILM-----RGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLG 93
            G +  ++G SG GK+ LM     R   G I    G++++ G      K ++ FA  +  G
Sbjct: 906  GVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIRISG----FPKKQETFARIS--G 956

Query: 94   VLFQHGALFSSMTVQENISMPIKEHLNLPAD---------------LIEHIVHTKIAIVG 138
               Q+      +TV+E  S+     L LP +               L+E + + K AIVG
Sbjct: 957  YCEQNDIHSPQVTVRE--SLIYSAFLRLPKEVSKEEKMMFVDEVMELVE-LDNLKDAIVG 1013

Query: 139  LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186
            LP  T       LS    KR+++A  L  +P ++F+DEPTSGLD  AA
Sbjct: 1014 LPGVTG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1055



 Score = 28.3 bits (63), Expect = 2.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206
           +SGG  KRV+    +      LF+DE ++GLD     +  K L ++ H    +V M
Sbjct: 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM 392


>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
          Length = 248

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 33/190 (17%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +LS+++L + + ++ IL  +NL++  GE+  ++G +G+GKS L   + G       + +V
Sbjct: 1   MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG-----REDYEV 55

Query: 73  LGEHLNLAKGKQNFAFS----AKLGVL--FQHGALFSSMTVQ---ENISMPIKEHLNLP- 122
            G  +   KGK     S    A  G+   FQ+      ++ Q   +     ++ +     
Sbjct: 56  TGGTVEF-KGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP 114

Query: 123 ------ADLIEHIVHTKIAIVGLPPE----TANLMPFQLSGGMIKRVSLARALAIDPDLL 172
                  DL+E     KIA++ +P +    + N+     SGG  KR  + +   ++P+L 
Sbjct: 115 LDRFDFQDLMEE----KIALLKMPEDLLTRSVNV---GFSGGEKKRNDILQMAVLEPELC 167

Query: 173 FLDEPTSGLD 182
            LDE  SGLD
Sbjct: 168 ILDESDSGLD 177


>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
          Length = 590

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 35/153 (22%)

Query: 36  ILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLA------KGKQNFAFS 89
           I  GE++G++G +G GK+   + + G++    GEV      L ++      K   +    
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD---PELKISYKPQYIKPDYDGTVE 418

Query: 90  AKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPF 149
               +L        S   +  I  P    L L   L++  V                   
Sbjct: 419 D---LLRSITDDLGSSYYKSEIIKP----LQLE-RLLDKNVKD----------------- 453

Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
            LSGG ++RV++A  L+ D DL  LDEP++ LD
Sbjct: 454 -LSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485



 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
           +LSGG ++RV++A AL  D D  F DEPTS LD
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244



 Score = 28.2 bits (64), Expect = 2.3
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 7/34 (20%)

Query: 38  RGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71
            G++ G++G +G GK+  ++ IL      SGE+ 
Sbjct: 98  EGKVTGILGPNGIGKTTAVK-IL------SGELI 124


>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 200

 Score = 49.6 bits (118), Expect = 9e-07
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 21/180 (11%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +L V  L  + +++ +L  I+  +  G +L + GS+G GK+ L++ I GL+    GE+  
Sbjct: 1   MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60

Query: 73  LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132
             + +     K    +  +L  +     +   +T++EN    I            H    
Sbjct: 61  ERQSIK----KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI------------HFSPG 104

Query: 133 KIAIVGLPP--ETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
            + I  L       +L+ +    LS G  ++V+L R       L  LDEP   LD ++  
Sbjct: 105 AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLL 164


>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
           Provisional.
          Length = 530

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 33/195 (16%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILG--LIPRVSGEV 70
           +LS  N+T++   + +  NI++    G   G+IG++G GKS  M+ ILG  L P  +G V
Sbjct: 1   MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMK-ILGGDLEPS-AGNV 58

Query: 71  KVLGEHLNLAKGKQN-FAF---SAKLGVLFQHGALFSSMTVQENI-SMP--IKEHLNLPA 123
             L  +  L K +Q+ FAF   +    V+  H  L+     ++ I ++P   +E     A
Sbjct: 59  S-LDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVA 117

Query: 124 DLIEHIVHTKIAI----------------VGLPPETANLMPFQLSGGMIKRVSLARALAI 167
           DL       K A                 VG+P E    +  +++ G   RV LA+AL  
Sbjct: 118 DL-----EVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172

Query: 168 DPDLLFLDEPTSGLD 182
           +PD+L LDEPT+ LD
Sbjct: 173 NPDILLLDEPTNNLD 187



 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 9   QEEKI----LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64
           Q++K+    L V NLT   +N  +  N+NL +  GE L +IG +G GK+ L+R ++G + 
Sbjct: 311 QDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE 370

Query: 65  RVSGEVK 71
             SG VK
Sbjct: 371 PDSGTVK 377


>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein.  This model
           describes glucan exporter ATP binding protein in
           bacteria. It belongs to the larger ABC transporter
           superfamily with the characteristic ATP binding motif.
           The In general, this protein is in some ways implicated
           in osmoregulation and suggested to participate in the
           export of glucan from the cytoplasm to periplasm. The
           cyclic beta-1,2-glucan in the bactrerial periplasmic
           space is suggested to confer the property of high
           osmolority. It has also been demonstrated that mutants
           in this loci have lost functions of virulence and
           motility. It is unclear as to how virulence and
           osmoadaptaion are related.
          Length = 585

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 32/182 (17%)

Query: 17  RNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----SGEVK 71
           R++T E  N+   + +++ +   G+ + ++G +G GK+ L    + L+ RV     G++ 
Sbjct: 338 RHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTL----INLLQRVYDPTVGQIL 393

Query: 72  VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL---------- 121
           + G  +N    +   +    +  +FQ   LF+  +++ENI +  +E              
Sbjct: 394 IDGIDINTVTRE---SLRKSIATVFQDAGLFNR-SIRENIRLG-REGATDEEVYEAAKAA 448

Query: 122 -PADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
              D I    +    +VG   E  N    +LSGG  +R+++ARA+  +  +L LDE TS 
Sbjct: 449 AAHDFILKRSNGYDTLVG---ERGN----RLSGGERQRLAIARAILKNAPILVLDEATSA 501

Query: 181 LD 182
           LD
Sbjct: 502 LD 503


>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
           subunit; Provisional.
          Length = 264

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 53/243 (21%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
           L++I+L    G+++G++G +G+GKS L   I G +    G+V   GE             
Sbjct: 40  LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE------------- 86

Query: 89  SAKLGVLFQHGALFSSMTVQENISMPI-------KEHLNLPADLIE-----HIVHTKIAI 136
              + V+     L   +T  ENI   +       KE   +   +IE       ++  +  
Sbjct: 87  ---VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVK- 142

Query: 137 VGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL 196
                        + S GM  ++  +  + ++PD+L +DE  S  D   A    K L K+
Sbjct: 143 -------------KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFA---QKCLDKI 186

Query: 197 RH--SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE-GTISDIVDSNDPWIRSYFNRF 253
                   +++ ++H+L  +   C ++A I+  G +K+ G + D++    P   ++ N F
Sbjct: 187 YEFKEQNKTIFFVSHNLGQVRQFCTKIAWIE-GGKLKDYGELDDVL----PKYEAFLNDF 241

Query: 254 TKR 256
            K+
Sbjct: 242 KKK 244


>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter.  This model
           describes cyclic peptide transporter in bacteria.
           Bacteria have elaborate pathways for the production of
           toxins and secondary metabolites. Many such compounds,
           including syringomycin and pyoverdine are synthesized on
           non-ribosomal templates consisting of a multienzyme
           complex. On several occasions the proteins of the
           complex and transporter protein are present on the same
           operon. Often times these compounds cross the biological
           membrane by specific transporters. Syringomycin is an
           amphipathic, cylclic lipodepsipeptide when inserted into
           host causes formation of channels, permeable to variety
           of cations. On the other hand, pyoverdine is a cyclic
           octa-peptidyl dihydroxyquinoline, which is efficient in
           sequestering iron for uptake.
          Length = 555

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 27/191 (14%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNL-AKGKQNFA 87
           L  I+L I +G+I+ ++G +G GKS L +   GL     GE+ + G  ++  ++      
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417

Query: 88  FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL-------IEHIVHTKIAIVGLP 140
           FSA    +F    LF  +     I     EH +L           I      K+ I    
Sbjct: 418 FSA----IFADFHLFDDL-----IGPDEGEHASLDNAQQYLQRLEIAD----KVKIEDGG 464

Query: 141 PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF-DKLLIKLRHS 199
             T       LS G  KR++L  A   D  +L  DE  +  DP     F ++LL  L+  
Sbjct: 465 FSTTT----ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520

Query: 200 LGLSVYMITHD 210
            G ++ +I+HD
Sbjct: 521 -GKTIIIISHD 530


>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 195

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 13  ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           +LS+  L   +  + + + +++  L   I  + G++G GKS L+R I G++   SG +  
Sbjct: 1   MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59

Query: 73  LGEHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131
              ++N +AK             +  +  L   MTV EN+     E  N    L   I +
Sbjct: 60  KNCNINNIAK--------PYCTYIGHNLGLKLEMTVFENLKF-WSEIYNSAETLYAAIHY 110

Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
            K+       +  +   + LS GM K V++AR +A   DL  LDE  + L 
Sbjct: 111 FKLH------DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155


>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
           protein ModF; Provisional.
          Length = 490

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 134 IAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184
           + I+G+   TA+  PF  LS G  +   + RAL   P LL LDEP  GLDP+
Sbjct: 385 LDILGIDKRTAD-APFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435



 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 148 PF-QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206
            F  LS G  ++  L +AL  +PDLL LDEP  GLD  + ++  +LL  L H  G+++ +
Sbjct: 132 RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL-HQSGITLVL 190

Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
           + +  + +        V+    + + G   +I
Sbjct: 191 VLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222



 Score = 35.0 bits (81), Expect = 0.020
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 17  RNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61
            N  +  N+R IL+N++  +  GE   ++G +G GKS L+  I G
Sbjct: 264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308



 Score = 30.4 bits (69), Expect = 0.55
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
          L +   T  L++   L   +L +  G+    +G++G+GKS L R + G +P +SGE
Sbjct: 4  LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE 59


>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
          Length = 1466

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 145  NLMPF--QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL 202
            N+ P+   LSGG  +R+++ARAL  +P +L LDE TS LD  + +  +K ++ ++     
Sbjct: 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410

Query: 203  SVYMITHDLNNLISTCNRVAVIQKKG-----IMKEGTISDIVDSNDPWIRSY 249
            ++  I H + + I   +++ V          +   GT  +++   D   + Y
Sbjct: 1411 TIITIAHRIAS-IKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKY 1461



 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 18/75 (24%)

Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
           +LSGG  +R+S+ARA+  +P +L LDE TS LD                    S Y++  
Sbjct: 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLD------------------NKSEYLVQK 620

Query: 210 DLNNLISTCNRVAVI 224
            +NNL    NR+ +I
Sbjct: 621 TINNLKGNENRITII 635



 Score = 31.5 bits (71), Expect = 0.23
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 28  ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87
           I  ++N  +  G+    +G SG GKS +++ I  L     G++ +   H NL      + 
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH-NLKDINLKW- 457

Query: 88  FSAKLGVLFQHGALFSSMTVQENI 111
           + +K+GV+ Q   LFS+ +++ NI
Sbjct: 458 WRSKIGVVSQDPLLFSN-SIKNNI 480


>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 592

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 52/213 (24%), Positives = 99/213 (46%), Gaps = 25/213 (11%)

Query: 14  LSVRNLTIE-LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
           + + N++    ++ ++L NINL +     + ++G +G+GKS L   ++G  P   GE+++
Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400

Query: 73  LG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS----MPIKEHLNLPADL 125
            G     L+ +  +Q  A   +  V+       +++T+  +IS        E + L A+L
Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRDISEEQVWQALETVQL-AEL 458

Query: 126 IEHI---VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
              +   ++T +       E  N     LS G  + ++LAR L   P +L LDE T+ +D
Sbjct: 459 ARSLPDGLYTPLG------EQGN----NLSVGQKQLLALARVLVQTPQILILDEATANID 508

Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLI 215
               +   + L  +R    L V  I H L+ ++
Sbjct: 509 SGTEQAIQQALAAVREHTTLVV--IAHRLSTIV 539


>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit.  This family is based
           on the phylogenomic analysis of JA Eisen (1999, Ph.D.
           Thesis, Stanford University).
          Length = 924

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 14/69 (20%)

Query: 151 LSGGMIKRVSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFD--KLLIKLRHSL---GL 202
           LSGG  +R+ LA+ L   +    L  LDEPT+GL       FD  K L+++   L   G 
Sbjct: 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL------HFDDIKKLLEVLQRLVDQGN 882

Query: 203 SVYMITHDL 211
           +V +I H+L
Sbjct: 883 TVVVIEHNL 891



 Score = 31.5 bits (72), Expect = 0.22
 Identities = 12/27 (44%), Positives = 20/27 (74%)

Query: 29 LNNINLDILRGEILGVIGSSGTGKSIL 55
          L NI+++I R +++ + G SG+GKS L
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38



 Score = 31.1 bits (71), Expect = 0.29
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK 81
           L NI + I  G    + G SG+GKS L+   L            L   LN AK
Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTLINDTL---------YPALARRLNGAK 666



 Score = 29.2 bits (66), Expect = 1.0
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 137 VGLPPETANLMPFQLSGGMIKRVSLARAL--AIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194
           VGL   T +     LSGG  +R+ LA  +   +   L  LDEP+ GL     E     L 
Sbjct: 474 VGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLK 533

Query: 195 KLRHSLGLSVYMITHD 210
           +LR  LG +V ++ HD
Sbjct: 534 RLR-DLGNTVIVVEHD 548


>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
           activities.  AAA - ATPases associated with a variety of
           cellular activities. This profile/alignment only detects
           a fraction of this vast family. The poorly conserved
           N-terminal helix is missing from the alignment.
          Length = 148

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-----IA 185
             +  +  L            SG +  R++LA A  + PD+L LDE TS LD      + 
Sbjct: 41  ILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL 100

Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLIS 216
             E  +LL+ L+    L+V + T+D  +L  
Sbjct: 101 LLEELRLLLLLKSEKNLTVILTTNDEKDLGP 131



 Score = 34.7 bits (79), Expect = 0.022
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 38 RGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73
           GE++ ++G  G+GK+ L R +   +    G V  +
Sbjct: 1  PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36


>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
          Length = 1809

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 137 VGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLF-----LDEPTSGLDPIAAEEFDK 191
           +GLP  T       LSGG  +R +LA+ L  +   L      LDEP+ GL P    +   
Sbjct: 463 LGLPYLTPERALATLSGGEQERTALAKHLGAE---LIGITYILDEPSIGLHPQDTHKLIN 519

Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRV 221
           ++ KLR   G +V ++ HD   +IS  +R+
Sbjct: 520 VIKKLRDQ-GNTVLLVEHD-EQMISLADRI 547



 Score = 37.1 bits (86), Expect = 0.005
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 151 LSGGMIKRVSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
           LSGG I+R+ LA  L   +  P L  LDEPT+GL     +    +L  L H  G +V +I
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVII 868

Query: 208 THDLNNLISTCNRV 221
            H++ +++   + V
Sbjct: 869 EHNM-HVVKVADYV 881



 Score = 28.3 bits (63), Expect = 1.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSIL 55
          L VR   I + N   L NI+++    EI+ + G SG+GKS L
Sbjct: 4  LPVRLSGITVRN---LKNISIEFCPREIVLLTGVSGSGKSSL 42



 Score = 28.3 bits (63), Expect = 2.0
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 6   IPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60
           IP +    L    LT+    +  L ++ + +  G +  V G SG+GKS L+   L
Sbjct: 590 IPEKRTNSLG--TLTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTL 642



 Score = 27.9 bits (62), Expect = 2.8
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 169  PDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210
            P L  LDE  + LD          L  L  SLG SV  I HD
Sbjct: 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLV-SLGHSVIYIDHD 1761


>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
          Length = 943

 Score = 34.3 bits (80), Expect = 0.029
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 14/71 (19%)

Query: 11  EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70
            K L ++      NN   L N++++I  G+   V G SG+GKS L+   L          
Sbjct: 612 GKFLKLKGARE--NN---LKNVDVEIPLGKFTCVTGVSGSGKSTLINETL---------Y 657

Query: 71  KVLGEHLNLAK 81
           K L   LN AK
Sbjct: 658 KALARKLNGAK 668



 Score = 32.0 bits (74), Expect = 0.17
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 14/69 (20%)

Query: 151 LSGGMIKRVSLARALAIDPD---LLFLDEPTSGLDPIAAEEFD--KLLIKLRHSL---GL 202
           LSGG  +RV LA+ L+       L  LDEPT+GL       F+  + L+++ H L   G 
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL------HFEDIRKLLEVLHRLVDKGN 884

Query: 203 SVYMITHDL 211
           +V +I H+L
Sbjct: 885 TVVVIEHNL 893



 Score = 28.1 bits (64), Expect = 2.1
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 10/41 (24%)

Query: 24 NNRII--------LNNINLDILRGEILGVI-GSSGTGKSIL 55
           ++II        L NI+LDI R + L V  G SG+GKS L
Sbjct: 3  MDKIIIRGAREHNLKNIDLDIPRDK-LVVFTGLSGSGKSSL 42


>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
          Length = 352

 Score = 31.1 bits (71), Expect = 0.27
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 19  LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV-KVLGEHL 77
           L I +   I L  + L+ LR +I  V G SG GKS L   I  LIP V   V KV G+  
Sbjct: 153 LFISVETGIGLEAL-LEQLRNKITVVAGPSGVGKSSL---INRLIPDVELRVGKVSGK-- 206

Query: 78  NLAKGK 83
            L +G+
Sbjct: 207 -LGRGR 211


>gnl|CDD|129694 TIGR00606, rad50, rad50.  This family is based on the phylogenomic
            analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
            University).
          Length = 1311

 Score = 30.8 bits (69), Expect = 0.33
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 155  MIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL----RHSLGLSVYMITHD 210
            +I R++LA    ++  ++ LDEPT+ LD    E     L+++           + +ITHD
Sbjct: 1210 LIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHD 1269

Query: 211  --LNNLISTCNRVAVIQKKGIMKEGTISDIV 239
                 L+     V    +    ++   S+IV
Sbjct: 1270 EDFVELLGRSEYVEKFYRLKKNEDQ-CSEIV 1299


>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
          Length = 327

 Score = 30.7 bits (70), Expect = 0.34
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 41 ILGVIGSSGTGKSILMRGI 59
          +LGV G SG GK+  +RG+
Sbjct: 10 LLGVAGDSGCGKTTFLRGL 28


>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
          Length = 434

 Score = 30.2 bits (68), Expect = 0.49
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 7/49 (14%)

Query: 29  LNNIN--LDILRGEILGVIGSSGTGKSILMRGILGLIPRVS-GEVKVLG 74
           +N IN  L I +G+ +G++  SG GKS+L    LG+I R +  +V V+G
Sbjct: 143 VNAINGLLTIGKGQRVGLMAGSGVGKSVL----LGMITRYTQADVVVVG 187


>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
           Family protei. 
          Length = 659

 Score = 30.1 bits (68), Expect = 0.64
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 24  NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64
           N  +++ +++ ++  G  L + G +G GKS L R +  L P
Sbjct: 463 NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP 503



 Score = 27.0 bits (60), Expect = 4.6
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
           LSGG  +R+++AR     P    LDE TS +      + +  + +L    G++++ ++H
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYRLCREFGITLFSVSH 637


>gnl|CDD|185447 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional.
          Length = 390

 Score = 29.7 bits (67), Expect = 0.84
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIK-RVSLARAL 165
             +I  I HT+ + + L  + A++M  Q++GG +  +V  A++L
Sbjct: 154 CSVIRVIAHTQPSKLPLGQKKAHVMEIQVNGGSVAEKVDFAKSL 197


>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
          Length = 1047

 Score = 29.4 bits (66), Expect = 0.87
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 11/51 (21%)

Query: 151 LSGGMIKRVSLARALAIDP--------DLLFLDEPTSGLDPIAAEEFDKLL 193
           LSGG    VSLA ALA+          D LFLDE    LD   +E  D  L
Sbjct: 950 LSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLD---SETLDTAL 997


>gnl|CDD|179196 PRK00979, PRK00979, tetrahydromethanopterin S-methyltransferase
           subunit H; Provisional.
          Length = 308

 Score = 28.8 bits (65), Expect = 1.5
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 7   PSQEEKILSVRNLT-IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL--- 62
            S E +I + +  T + L +R I N+IN  I   EI   +  S    +I    +L     
Sbjct: 104 TSPEARIAAAKYATELGLADRAIYNSINPSIEEEEI-EALKESDIKAAI----VLAFDPM 158

Query: 63  IPRVSGEVKVLGE 75
            P V G +K+L E
Sbjct: 159 DPSVEGRLKMLEE 171


>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
          Length = 895

 Score = 28.3 bits (63), Expect = 1.8
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 151 LSGGMIKRVSLARALAI------DPDLLFLDEPTSGLDPIAAEEF-DKLLIKLRHSLGL- 202
           LSGG    V+ A  +A+      D  LL +DEPT+ LD        D +   L+ S  + 
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861

Query: 203 SVYMITHDLNNLISTCNRVAVIQKKG 228
            V MI+H    L+S  +    ++K  
Sbjct: 862 QVIMISHH-RELLSVADVAYEVKKSS 886


>gnl|CDD|178819 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
          Length = 423

 Score = 28.6 bits (65), Expect = 1.8
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 7/38 (18%)

Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRV 221
            + +E ++ L  L  S  +   +I       +STCNR 
Sbjct: 23  FSEDELEEALESLLASPSVLEAVI-------LSTCNRT 53


>gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
          Length = 442

 Score = 28.0 bits (63), Expect = 2.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 38  RGEILGVIGSSGTGKSILM 56
           RG+ +G+   SG GKS+L+
Sbjct: 157 RGQRMGIFAGSGVGKSVLL 175


>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
          Length = 356

 Score = 28.0 bits (63), Expect = 2.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 29  LNNINLDILR-----GEILGVIGSSGTGKSILMRGILG 61
           L+   LD+L      G+ + ++GSSG GKS L+  +LG
Sbjct: 180 LDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLG 217


>gnl|CDD|163292 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
           Members of this protein family are the FliI protein of
           bacterial flagellum systems. This protein acts to drive
           protein export for flagellar biosynthesis. The most
           closely related family is the YscN family of bacterial
           type III secretion systems. This model represents one
           (of three) segment of the FliI family tree. These have
           been modeled separately in order to exclude the type III
           secretion ATPases more effectively.
          Length = 411

 Score = 28.2 bits (64), Expect = 2.3
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 15/54 (27%)

Query: 38  RGEILGVIGSSGTGKSILM----RG------ILGLIPRVSGEVK-----VLGEH 76
           RG+ +G+   SG GKS L+    R       ++GLI     EVK     +LGE 
Sbjct: 136 RGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGREVKEFIEDILGEE 189


>gnl|CDD|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed.
          Length = 1107

 Score = 27.5 bits (61), Expect = 3.5
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 14/83 (16%)

Query: 57  RGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENISMP 114
           +G++ + P   GE++ L     L + K++ A         +F +  +             
Sbjct: 118 KGLIAISPGKDGEIEQL-----LLEDKESQAEEVARAYQNMFGNFYMSLQH-------HA 165

Query: 115 IKEHLNLPADLIEHIVHTKIAIV 137
           I++ L L   L E      I +V
Sbjct: 166 IQDELLLQEKLPEFSNRVNIPVV 188


>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
          Length = 451

 Score = 27.4 bits (61), Expect = 3.9
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 14/59 (23%)

Query: 32  IN--LDILRGEILGVIGSSGTGKSILMRG-----------ILGLIPRVSGEVKVLGEHL 77
           IN  L + RG+ LG+   +G GKS+L+ G           ++GLI     EVK   EH+
Sbjct: 159 INGLLTVGRGQRLGLFAGTGVGKSVLL-GMMTRFTEADIIVVGLIGERGREVKEFIEHI 216


>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
          Length = 880

 Score = 27.3 bits (61), Expect = 4.1
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 151 LSGGMIKRVSLARALAI------DPDLLFLDEPTSGLDPIAAEEFDKLLIKL--RHSLGL 202
           LSGG    + LA  LA+      +  LL LDEPT  LD    EE  + L+ +  R+   +
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLD----EERRRKLVDIMERYLRKI 844

Query: 203 S-VYMITHD 210
             V +++HD
Sbjct: 845 PQVIIVSHD 853


>gnl|CDD|184312 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.
          Length = 637

 Score = 27.3 bits (61), Expect = 4.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 45 IGSSGTGKSILMRGILGLIPR 65
          IGS GTGKS+L + +  L+P+
Sbjct: 56 IGSPGTGKSMLAKAMAELLPK 76


>gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional.
          Length = 506

 Score = 27.3 bits (60), Expect = 4.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 39  GEILGVIGSSGTGKSILMRGILGLIPRVSGE 69
           G  L +IG  GTGK++L   I GL+P +S E
Sbjct: 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNE 240


>gnl|CDD|184036 PRK13407, bchI, magnesium chelatase subunit I; Provisional.
          Length = 334

 Score = 27.1 bits (60), Expect = 4.4
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 22 ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66
          E+   ++L  I+  I  G +L V G  GTGKS  +R +  L+P +
Sbjct: 15 EMKQAMVLTAIDPGI--GGVL-VFGDRGTGKSTAVRALAALLPLI 56


>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
          Length = 455

 Score = 27.1 bits (60), Expect = 5.1
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)

Query: 31  NINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS-GEVKVLG 74
           N  L + RG+ +G+   SG GKS+L    LG++ R +  +V V+G
Sbjct: 167 NALLTVGRGQRMGLFAGSGVGKSVL----LGMMARYTQADVIVVG 207


>gnl|CDD|163070 TIGR02915, PEP_resp_reg, putative PEP-CTERM system response
           regulator.  Members of this protein family share
           full-length homology with (but do not include) the
           acetoacetate metabolism regulatory protein AtoC. These
           proteins have a Fis family DNA binding sequence
           (pfam02954), a response regulator receiver domain
           (pfam00072), and sigma-54 interaction domain
           (pfam00158).
          Length = 445

 Score = 27.0 bits (60), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 44  VIGSSGTGKSILMRGILGLIPRVSG 68
           ++G SGTGK +L R +  L  R   
Sbjct: 167 LLGESGTGKEVLARALHQLSDRKDK 191


>gnl|CDD|181369 PRK08304, PRK08304, stage V sporulation protein AD; Validated.
          Length = 337

 Score = 26.7 bits (60), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 99  GALFSSMTVQENISMP 114
           GAL S  + Q+  S+P
Sbjct: 310 GALLSPTSSQQGESIP 325


>gnl|CDD|184273 PRK13721, PRK13721, conjugal transfer ATP-binding protein TraC;
           Provisional.
          Length = 844

 Score = 27.0 bits (60), Expect = 5.6
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 6/32 (18%)

Query: 29  LNNINLDILRGEILGVIGSSGTGKSILMRGIL 60
           +NN N ++       V G+SG GK+ L++ ++
Sbjct: 445 MNNTNYNM------AVCGTSGAGKTGLIQPLI 470


>gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
           The Aquifex aeolicus ortholog is split into consecutive
           open reading frames. Consequently, this model was build
           in fragment mode (-f option).
          Length = 245

 Score = 26.6 bits (59), Expect = 6.0
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 35  DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK 81
           + L+  I    G SG GKS L+  +    P V  +V  +   L L K
Sbjct: 116 EALQNRISVFAGQSGVGKSSLINALD---PSVKQQVNDISSKLGLGK 159


>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
          Length = 880

 Score = 26.9 bits (60), Expect = 6.0
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 12/49 (24%)

Query: 146 LMPFQLSGG------MIKRVSLARALA--IDPDL----LFLDEPTSGLD 182
           L P QLSGG      +  R ++ R LA  I+ D     L LDEPT  LD
Sbjct: 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLD 825


>gnl|CDD|163433 TIGR03721, exospore_TM, BclB C-terminal domain.  This domain occurs
           as the C-terminal region in a number of proteins that
           have extensive collagen-like triple helix repeat
           regions. Member domains are predicted by TmHMM to have
           four or five transmembrane helices. Members are found
           mostly in the Firmicutes, but also in Acanthamoeba
           polyphaga mimivirus. Members include spore surface
           glycoprotein BclB from Bacillus anthracis, a protein of
           the exosporium. The exosporium is an additional
           outermost spore layer, lacking in B. subtilis and most
           other spore formers, consisting of a basal layer and,
           above it, a nap of fine filaments.
          Length = 165

 Score = 26.8 bits (59), Expect = 6.3
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%)

Query: 70  VKVLGEHLNLAKGKQNFAFSA-KLGVLFQHGALFSSMTVQENISMPIKEHLNL-----PA 123
           + ++G  ++LA G  N+AFS  + G++    A FS+      +  P+     L     P+
Sbjct: 35  LSLVGGTIDLAGGLTNYAFSMPRDGIITSLAAYFSATAALALLG-PVTITAQLYIAPAPS 93

Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183
           ++   +    + +   PP T  +     + G+I  +++    A D  LL +    SGL P
Sbjct: 94  NVFTPVPGAPVTL--TPPITGPIAVGSTASGIITGLNIP-VTAGDRLLLVVSATASGLSP 150

Query: 184 IAA 186
           IA 
Sbjct: 151 IAT 153


>gnl|CDD|183875 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed.
          Length = 443

 Score = 26.7 bits (60), Expect = 6.4
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 174 LDEPTSGLDPIAAEEFDKLLI 194
           L+E  +   P A   FDK+L+
Sbjct: 354 LEEDFTD-QPWALGGFDKVLL 373


>gnl|CDD|131085 TIGR02030, BchI-ChlI, magnesium chelatase ATPase subunit I.  This
          model represents one of two ATPase subunits of the
          trimeric magnesium chelatase responsible for insertion
          of magnesium ion into protoporphyrin IX. This is an
          essential step in the biosynthesis of both chlorophyll
          and bacteriochlorophyll. This subunit is found in green
          plants, photosynthetic algae, cyanobacteria and other
          photosynthetic bacteria.
          Length = 337

 Score = 26.8 bits (59), Expect = 6.4
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 22 ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66
          E+   ++LN I+  I  G ++ V+G  GTGKS  +R +  L+P +
Sbjct: 11 EMKLALLLNVIDPKI--GGVM-VMGDRGTGKSTAVRALAALLPEI 52


>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family.  This family of
           ATPases demonstrates extensive homology with ATP
           synthase F1, beta subunit. It is a mixture of members
           with two different protein functions. The first group is
           exemplified by Salmonella typhimurium FliI protein. It
           is needed for flagellar assembly, its ATPase activity is
           required for flagellation, and it may be involved in a
           specialized protein export pathway that proceeds without
           signal peptide cleavage. The second group of proteins
           function in the export of virulence proteins;
           exemplified by Yersinia sp. YscN protein an ATPase
           involved in the type III secretory pathway for the
           antihost Yops proteins.
          Length = 440

 Score = 26.6 bits (59), Expect = 6.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 38  RGEILGVIGSSGTGKSILMRGILGLIPRVS-GEVKVLG 74
           +G+ +G+   SG GKS L+    G+I R +  +V V+ 
Sbjct: 162 KGQRIGIFAGSGVGKSTLL----GMIARNTEADVNVIA 195


>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
          Length = 444

 Score = 26.6 bits (59), Expect = 7.4
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 17/62 (27%)

Query: 32  IN--LDILRGEILGVIGSSGTGKSILM----RG------ILGLIPRVSGEVK-----VLG 74
           IN  L + +G+ +G+   SG GKS+L+    RG      ++GL+     EVK     +LG
Sbjct: 153 INAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEILG 212

Query: 75  EH 76
           E 
Sbjct: 213 EE 214


>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC.  This family is based on the
            phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
            Stanford University).
          Length = 1042

 Score = 26.1 bits (57), Expect = 9.5
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 13/53 (24%)

Query: 151  LSGGMIKRVSLARALAIDP----------DLLFLDEPTSGLDPIAAEEFDKLL 193
            LSGG     SL+ ALA+            D LF+DE    LD    +  D+ +
Sbjct: 951  LSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLD---EDSLDRAI 1000


>gnl|CDD|184869 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional.
          Length = 659

 Score = 25.9 bits (57), Expect = 9.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 170 DLLFLDEPTSGLDPIAAEEFDKLL 193
           D+ F+   T+GL PI AE  +K L
Sbjct: 451 DMDFMAPSTTGLRPIGAENIEKSL 474


>gnl|CDD|131892 TIGR02845, spore_V_AD, stage V sporulation protein AD.  Bacillus
           and Clostridium species contain about 10 % dipicolinic
           acid (pyridine-2,6-dicarboxylic acid) by weight. This
           protein family, SpoVAD, belongs to the spoVA operon that
           is suggested to act in the transport of dipicolinic acid
           (DPA) from the mother cell, where DPA is synthesized, to
           the forespore, a process essential to sporulation.
           Members of this protein family are found, so far, in
           exactly those species believed capable of endospore
           formation.
          Length = 327

 Score = 26.2 bits (58), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 99  GALFSSMTVQENISMPIKEH 118
           GAL S  T Q+  S+P   H
Sbjct: 303 GALLSPTTFQQGESIPGIAH 322


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.139    0.391 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,292,400
Number of extensions: 287366
Number of successful extensions: 1332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1083
Number of HSP's successfully gapped: 375
Length of query: 257
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 166
Effective length of database: 4,028,145
Effective search space: 668672070
Effective search space used: 668672070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)