RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] (257 letters) >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 182 bits (463), Expect = 1e-46 Identities = 85/244 (34%), Positives = 142/244 (58%), Gaps = 1/244 (0%) Query: 8 SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 ++ +R ++ NR I +NI+L + RG+I ++G SG GK+ L+R I G I Sbjct: 2 QSVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH 61 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127 GE+ GE++ + + ++ +LFQ GALF+ M V +N++ P++EH LPA L+ Sbjct: 62 GEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH 121 Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 V K+ VGL A LMP +LSGGM +R +LARA+A++PDL+ DEP G DPI Sbjct: 122 STVMMKLEAVGL-RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG 180 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247 KL+ +L +LG++ +++HD+ ++S + ++ K I+ G+ + + DP +R Sbjct: 181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVR 240 Query: 248 SYFN 251 + + Sbjct: 241 QFLD 244 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 150 bits (381), Expect = 4e-37 Identities = 86/210 (40%), Positives = 128/210 (60%), Gaps = 2/210 (0%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 LNN++L I GEI GVIG+SG GKS L+R I L SG V V G+ L K+ Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148 ++G++FQH L SS TV +N+++P+ E P I+ V + +VGL + A+ P Sbjct: 81 RRQIGMIFQHFNLLSSRTVFDNVALPL-ELAGTPKAEIKARVTELLELVGL-SDKADRYP 138 Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208 QLSGG +RV++ARALA +P +L DE TS LDP +LL + LGL++ +IT Sbjct: 139 AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLIT 198 Query: 209 HDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 H+++ + C+RVAVI ++++GT+S++ Sbjct: 199 HEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 148 bits (374), Expect = 2e-36 Identities = 83/210 (39%), Positives = 128/210 (60%), Gaps = 2/210 (0%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 LNN++L + G+I GVIG+SG GKS L+R + L SG V V G+ L + Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148 ++G++FQH L SS TV N+++P+ E N P D I+ V +A+VGL + + P Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEIKRKVTELLALVGLG-DKHDSYP 138 Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208 LSGG +RV++ARALA +P +L DE TS LDP + +LL ++ LGL++ +IT Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLIT 198 Query: 209 HDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 H+++ + C+ VAVI ++++GT+S+I Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQGTVSEI 228 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 144 bits (364), Expect = 3e-35 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 15/229 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 LS+ N+ L +I+L + +GE + ++G SG GK+ L+R I GL + +G + Sbjct: 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQG 64 Query: 74 GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 G + L K+++ G++FQ ALF ++TV +NI+ +K + + V Sbjct: 65 GRDITRLPPQKRDY------GIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAE 117 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + +VGLP + P QLSGG +RV+LARALA P LL LDEP S LD A + L Sbjct: 118 LLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD---ARVREHL 173 Query: 193 ---LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 + +L+ LG++ M+THD +S +R+ V+ I + GT +I Sbjct: 174 RTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 137 bits (346), Expect = 3e-33 Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87 +L N++L I GE +G++G SG GKS L R +LGL G V G+ L KQ A Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85 Query: 88 FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 F + ++FQ A+ MTV++ I P++ +L + + + +VGL E A+ Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 +P QLSGG ++R+++ARALA+ P L+ LDE S LD + +LL KL+ + G + Sbjct: 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYL 205 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247 ITHDL + S C RVAV+ K I++E ++ ++ P R Sbjct: 206 FITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGR 247 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 136 bits (345), Expect = 4e-33 Identities = 74/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGKQNFA 87 +N+ +L I +GEI ++G SG+GKS +R + LI +G++ + GE++ + + Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68 Query: 88 FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147 K+G++FQ ALF MT+ +N S+ E L P + + +VGL E + Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSL-GPELLGWPEQERKEKALELLKLVGLE-EYEHRY 126 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 P +LSGGM +RV LARALA +PD+L +DE S LDP+ + L KL+ +L ++ I Sbjct: 127 PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI 186 Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIV-DSNDPWIRSYF 250 THDL+ I +R+ +++ I++ GT +I+ + + ++ + Sbjct: 187 THDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 131 bits (331), Expect = 2e-31 Identities = 66/218 (30%), Positives = 114/218 (52%), Gaps = 12/218 (5%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LGLIP--RVS 67 + + NL + + L NINLDI + ++ +IG SG GKS L+R + L+P R+ Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127 G+V G+ + K ++G++FQ F M++ +NI+ + H ++ Sbjct: 61 GKVLFDGQDIY-DKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELD 118 Query: 128 HIVHTKIAIVGLPPET---ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 IV + L E + LSGG +R+ +ARALA++P++L LDEPTS LDPI Sbjct: 119 EIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVA 222 A + ++L+ +L+ ++ ++TH++ +R A Sbjct: 179 ATGKIEELIQELKKK--YTIVIVTHNMQQAARISDRTA 214 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 129 bits (326), Expect = 8e-31 Identities = 69/200 (34%), Positives = 110/200 (55%), Gaps = 4/200 (2%) Query: 13 ILSVRNLTIE-LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 ++ N++ L++++L I +GE L + G SG GK+ L++ + G + G+V+ Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 + GE +N +G+Q ++GV+FQ L TV EN+++P+ E I+ V Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL-EVRGKKEREIQRRVG 119 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 + VGL + A+ P QLSGG +RV++ARA+ P LL DEPT LDP +E Sbjct: 120 AALRQVGLEHK-ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD 178 Query: 192 LLIKLRHSLGLSVYMITHDL 211 LL +L + G +V + THDL Sbjct: 179 LLKRL-NKRGTTVIVATHDL 197 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 129 bits (325), Expect = 1e-30 Identities = 75/212 (35%), Positives = 107/212 (50%), Gaps = 2/212 (0%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87 +LNN++L + GE + ++G SG GKS L R ++GL G V GE L Q A Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86 Query: 88 FSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 F + ++FQ A+ TV+E I P++ L+L + V L + Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 P QLSGG ++RV LARALA++P LL LDE S LD + +LL KL+ G + Sbjct: 147 KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACL 206 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237 ITHDL + C RV V+ I++ + D Sbjct: 207 FITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 127 bits (321), Expect = 3e-30 Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 20/232 (8%) Query: 19 LTIELNN-------RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 ++IE+ N +LN+I+LDI G+++ ++G SG+GK+ L+R I GL + SG ++ Sbjct: 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS-----MPIKEHLNLPADLI 126 G ++ + K+G +FQH ALF MTV +NI+ +P +E N A I Sbjct: 61 FHGTDVSRLHARDR-----KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPN--AAAI 113 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 + V + +V L A+ P QLSGG +RV+LARALA++P +L LDEP LD Sbjct: 114 KAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 +E + L +L L + +THD + +RV V+ + I + GT + Sbjct: 173 KELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 123 bits (310), Expect = 5e-29 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 16 VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75 + N++ + L+++NL++ G ++ ++G SG+GKS L+R I GL SG +++ G+ Sbjct: 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ 62 Query: 76 HLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA 135 + K+G +FQH ALF +TV++NI+ + E P I+ V + Sbjct: 63 DATRVHARDR-----KIGFVFQHYALFKHLTVRDNIAFGL-EIRKHPKAKIKARVEELLE 116 Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195 +V L + P QLSGG +RV+LARALA++P +L LDEP LD +E L K Sbjct: 117 LVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRK 175 Query: 196 LRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 L + ++ +THD + +R+ V+ I + G+ ++ D Sbjct: 176 LHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 121 bits (304), Expect = 2e-28 Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L +RNLT + + +++++L I +GEI ++G+SG GKS L+R + G +G++ + Sbjct: 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 G L+ Q + ++FQ ALF MTV++NI+ +K+ LP I V+ Sbjct: 79 DGVDLSHVPPYQR-----PINMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNE 132 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + +V + E A P QLSGG +RV+LAR+LA P LL LDEP LD + Sbjct: 133 MLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 ++ + +G++ M+THD ++ R+A++ + ++ G +I Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 120 bits (303), Expect = 3e-28 Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 10/211 (4%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L +NL I +GE + +IG SG GKS L+ I GL SG V + +GKQ Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL--------EGKQITEP 52 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHL-NLPADLIEHIVHTKIAIVGLPPETANLM 147 V+FQ+ +L +TV+ENI++ + L +L IV IA+VGL E A+ Sbjct: 53 GPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKR 111 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 P QLSGGM +RV++ARAL+I P +L LDEP LD + + L+++ ++V M+ Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171 Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 THD++ + +RV ++ G I ++ Sbjct: 172 THDVDEALLLSDRVVMLTNGPAANIGQILEV 202 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 118 bits (297), Expect = 2e-27 Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 3/198 (1%) Query: 30 NNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFS 89 + + L + GE LGV+G SG GKS R I+GL+ GEV LG+ L K + A Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97 Query: 90 AKLGVLFQH--GALFSSMTVQENISMPIKE-HLNLPADLIEHIVHTKIAIVGLPPETANL 146 + + ++FQ +L MT+ E I+ P++ H L ++ V + VGL P N Sbjct: 98 SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR 157 Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206 P + SGG +R+ +ARAL ++P L+ DEP S LD + LL +L+ +GLS+ Sbjct: 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF 217 Query: 207 ITHDLNNLISTCNRVAVI 224 I HDL + +RV V+ Sbjct: 218 IAHDLAVVKHISDRVLVM 235 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 118 bits (297), Expect = 2e-27 Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 16/220 (7%) Query: 31 NINLDILRGEILGVIGSSGTGKSILMRGILGLIP----RVSGEVKVLGEHLNLAKGKQNF 86 ++NL + RGE+L ++G SG+GKS+ ILGL+P + SGE+ + G L + Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62 Query: 87 AFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144 + + Q+ A T+ + ++ L I+ A VGLP + Sbjct: 63 ----HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA-VGLP-DPE 116 Query: 145 NLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201 ++ PFQLSGGM++RV +A AL ++P L DEPT+ LD + KLL +LR G Sbjct: 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176 Query: 202 LSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 + +ITHDL + + VAV+ I++ GT+ +I + Sbjct: 177 TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 116 bits (293), Expect = 5e-27 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 5/202 (2%) Query: 13 ILSVRNLT----IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68 ++S+RNL + +L +INL+I GEI+ + G SG+GK+ L+ I GL G Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 +KVLG+ L A K+ +G +FQ L +T ++N+ M ++ NL Sbjct: 61 SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE 120 Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188 + VGL + + P LSGG +RV++ARAL P L+ DEPT+ LD + + Sbjct: 121 RARAMLEAVGL-GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRD 179 Query: 189 FDKLLIKLRHSLGLSVYMITHD 210 +L+ KL G ++ ++THD Sbjct: 180 VVELMQKLAREQGCTILIVTHD 201 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 115 bits (290), Expect = 9e-27 Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 22/233 (9%) Query: 30 NNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL--GEHLNLAK---GKQ 84 N +LDI GEI ++G SG+GKS L+R + GL P G V V +++A Sbjct: 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATL 100 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENIS-------MPIKEHLNLPADLIEHIVHTKIAIV 137 + ++ ++FQ AL +TV+EN++ MP E V ++ +V Sbjct: 101 RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKR--------VDEQLELV 152 Query: 138 GLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197 GL + A+ P +LSGGM +RV LARA A+D D+L +DEP S LDP+ + L++L+ Sbjct: 153 GLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ 211 Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV-DSNDPWIRSY 249 L ++ ++HDL+ + NR+A+++ I++ GT +IV + + ++ + Sbjct: 212 AKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 115 bits (289), Expect = 1e-26 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 18/224 (8%) Query: 16 VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--VSGEVKVL 73 + +L + +L++++L+I GE+L +IG SG GK+ L+R I G + ++G + + Sbjct: 8 IDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIA 67 Query: 74 GEHL-NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 L + K+ L +LFQ+ ALF + V++N++ ++ +P I V Sbjct: 68 DRDLTHAPPHKRG------LALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVAD 120 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + +VGL A+L P QLSGGM +R+++ARA+AI+PD+L LDEP S LD + Sbjct: 121 ALKLVGLGDAAAHL-PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE 179 Query: 193 LIKLRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235 + L L L++ +THD ++ ++ ++ GIMK+G + Sbjct: 180 IAALHEELPELTILCVTHDQDDALTLADKA------GIMKDGRL 217 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 115 bits (290), Expect = 1e-26 Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 10/199 (5%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L + +L + + L +INL + GE+L V+G SG GK+ L+ I G +P G + + Sbjct: 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 G+ + A+ GV+FQ+ L VQ+N++ + + + I H Sbjct: 61 DGKPVE--------GPGAERGVVFQNEGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQ 111 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + VGL +QLSGG +RV +ARALA +P LL LDEP LD E+ L Sbjct: 112 MLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170 Query: 193 LIKLRHSLGLSVYMITHDL 211 L+KL G V +ITHD+ Sbjct: 171 LLKLWQETGKQVLLITHDI 189 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 114 bits (287), Expect = 2e-26 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 45/263 (17%) Query: 16 VRNLTIELNNRI-----ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 V+N+ N ++ L+N++++I +GE + +IG +G+GK+ + + L+ +G + Sbjct: 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64 Query: 71 KVLGEHLNLAKGKQNF---------------------AFSAKLGVLFQHG--ALFSSMTV 107 + + + K + ++GV+FQ LF T+ Sbjct: 65 EWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TI 123 Query: 108 QENI-------SMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVS 160 +++I + +E A IE +VGL PF+LSGG +RV+ Sbjct: 124 EKDIIFGPVSMGVSKEEAKKRAAKYIE--------LVGLDESYLQRSPFELSGGQKRRVA 175 Query: 161 LARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNR 220 LA LA++PD L DEPT+GLDP +E ++ L + G ++ ++THDL+N++ R Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLDNVLEWTKR 234 Query: 221 VAVIQKKGIMKEGTISDIVDSND 243 + I+K+G DI+ N Sbjct: 235 TIFFKDGKIIKDGDTYDILSDNK 257 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 114 bits (286), Expect = 3e-26 Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 11/235 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + ++T +L+ +N + GE + +IG SG+GKS ++R ++ L P G+++V Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60 Query: 74 GEHLNLAKGKQNFAFSA----------KLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123 GE L G+ A K+G++FQ LF TV +N++ L + Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120 Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 E + +VGL + A+ MP QLSGG +RV++ARALA+ P ++ DE TS LDP Sbjct: 121 AEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 E ++ +L L++ ++TH++ +RV K I+++G +I Sbjct: 180 ELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 113 bits (286), Expect = 3e-26 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 12/244 (4%) Query: 13 ILSVRNLTIELNN-RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 +L V NL+ N + L NINL+I GE + +IG SG GKS L+R I L+ SG + Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMP-------IKEHLNLPAD 124 + G + +GK+ ++G++FQH L +TV EN+ + L ++ Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120 Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 + + + VGL + A QLSGG +RV++ARALA PDL+ DEP + LDP Sbjct: 121 EDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDP 244 +++ L ++ G++V + H ++ +R+ ++ I+ +G S++ +D Sbjct: 180 TSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL---DDE 236 Query: 245 WIRS 248 +R Sbjct: 237 VLRH 240 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 113 bits (285), Expect = 4e-26 Identities = 70/241 (29%), Positives = 131/241 (54%), Gaps = 9/241 (3%) Query: 10 EEKILSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 +E+I+ V +++ + L +++ + GE + ++G +G+GKS L + + GL+ + Sbjct: 2 KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLI 126 G + V G L+ + + ++G++FQ+ F TVQ++++ + E++ +P + + Sbjct: 62 GTITVGGMVLS---EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL-ENIGVPREEM 117 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 V + VG+ + N P +LSGG +RV++A LA+ PD++ LDE TS LDP Sbjct: 118 VERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWI 246 E + + +L+ G++V ITHDL+ +RV V+ K I++EGT +I S Sbjct: 177 REVLETVRQLKEQKGITVLSITHDLDEAAQA-DRVIVMNKGEILEEGTPEEIFKSGHMLQ 235 Query: 247 R 247 Sbjct: 236 E 236 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 113 bits (285), Expect = 5e-26 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L RNL++ L R +L++++L + GE++ ++G +G GKS L+R + G + SGEV++ Sbjct: 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLN 62 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G L + + + VL QH +L TV+E ++M H A+ + +V Sbjct: 63 GRPLADWSPAE---LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAED-DALVAAA 118 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALA------IDPDLLFLDEPTSGLDPIAAE 187 +A V L P QLSGG +RV LAR LA P L LDEPTS LD Sbjct: 119 LAQVDLAHLAGRDYP-QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237 +L +L H GL+V ++ HDLN +R+ ++ + ++ +GT ++ Sbjct: 178 HVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 112 bits (282), Expect = 9e-26 Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 21/224 (9%) Query: 26 RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLA--KGK 83 R L ++N+ I G + +IG +G+GKS L++ + GL+ SG V +GE + A K K Sbjct: 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT-IGERVITAGKKNK 78 Query: 84 QNFAFSAKLGVLFQ--HGALFSSMTVQENIS-------MPIKEHLNLPADLIEHIVHTKI 134 + K+G++FQ LF TV+++I + ++ ++IE Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIE------- 130 Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 +VGLP E PF+LSGG ++RV++A LA++P++L LDEPT+GLDP +E ++ Sbjct: 131 -LVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFY 189 Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 KL GL+ ++TH + + +++ V+ K + +GT +I Sbjct: 190 KLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 112 bits (281), Expect = 1e-25 Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 9/198 (4%) Query: 33 NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-HLNLAKGKQNFAFSAK 91 +L++ GEI+ ++G SG GKS L+ I G I SG +KV + H LA ++ + Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS---- 73 Query: 92 LGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQL 151 +LFQ LF+ +TV++NI + + L L A+ E +V VG+ L P QL Sbjct: 74 --MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQ-VGIADYLDRL-PEQL 129 Query: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 SGG +RV+LAR L +L LDEP S LDP+ EE L+ +L ++ M+TH L Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 Query: 212 NNLISTCNRVAVIQKKGI 229 ++ + +++AV+ + I Sbjct: 190 SDARAIASQIAVVSQGKI 207 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 111 bits (280), Expect = 2e-25 Identities = 77/245 (31%), Positives = 136/245 (55%), Gaps = 17/245 (6%) Query: 9 QEEKILSVRNLT---IELNNRII--LNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63 E I+ VRN++ I ++ ++ ++N++L++ GEI G++G+SG GK+ L + I G++ Sbjct: 275 VGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334 Query: 64 PRVSGEVKVL--GEHLNLAKGKQNFAFSAK--LGVLFQHGALFSSMTVQENISMPIKEHL 119 SGEV V E +++ K + AK +G+L Q L+ TV +N++ I L Sbjct: 335 EPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG--L 392 Query: 120 NLPADL-IEHIVHTKIAIVGLPPETA----NLMPFQLSGGMIKRVSLARALAIDPDLLFL 174 LP +L V T + +VG E A + P +LS G RV+LA+ L +P ++ L Sbjct: 393 ELPDELARMKAVIT-LKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVIL 451 Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 DEPT +DPI + ++K R + + +++HD++ ++ C+R A+++ I+K G Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 Query: 235 ISDIV 239 +IV Sbjct: 512 PEEIV 516 Score = 92.6 bits (230), Expect = 1e-19 Identities = 74/267 (27%), Positives = 116/267 (43%), Gaps = 51/267 (19%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL--IPRVSGEV- 70 + V+NLT + + + +L NI+ I GE+LG++G SG GKS+LM + G+ SG + Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60 Query: 71 ----------------------KVLGEHL--------NLAKGKQNFAFSAKLGVLFQHG- 99 V G L NL+ K ++ ++ Q Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD-KLRRRIRKRIAIMLQRTF 119 Query: 100 ALFSSMTVQEN-------ISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLS 152 AL+ TV +N I KE + DLIE +V I + + LS Sbjct: 120 ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE-MVQLSHRITHIARD--------LS 170 Query: 153 GGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212 GG +RV LAR LA +P L DEPT LDP A+ L + + G+S+ + +H Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 Query: 213 NLISTCNRVAVIQKKGIMKEGTISDIV 239 + ++ ++ I +EGT ++V Sbjct: 231 VIEDLSDKAIWLENGEIKEEGTPDEVV 257 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 111 bits (279), Expect = 2e-25 Identities = 66/236 (27%), Positives = 124/236 (52%), Gaps = 10/236 (4%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---IPRVS 67 E I+ + N + + + N+ + I + +I +IG SG GK+ L+R I + IP Sbjct: 1 EPIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60 Query: 68 GEVKVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126 E K+ + ++ + + + K+G++FQ F M++ +N++ + H + Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKL 119 Query: 127 EHIVHTKIAIVGLPPETA---NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 + IV + L E N +LSGG +R+ +ARALA++P+++ LDEPTS LDP Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 IA + +KLL +L S ++ ++TH++ I + +A + + +++ G +IV Sbjct: 180 IATQRIEKLLEEL--SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 110 bits (277), Expect = 2e-25 Identities = 73/219 (33%), Positives = 127/219 (57%), Gaps = 8/219 (3%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL--NLAKGKQNF 86 L +I+L++ +G +IG +G+GKS L++ + GL+ G+V V G+ + + +K K+ Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-GDIVVSSTSKQKEIK 80 Query: 87 AFSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144 K+GV+FQ LF +++ P ++ +P + E I K+ +VGL E Sbjct: 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGP--QNFGIPKEKAEKIAAEKLEMVGLADEFW 138 Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204 PF+LSGG ++RV++A LA++P++L LDEPT+GLDP A E +L + H G +V Sbjct: 139 EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI-HQSGQTV 197 Query: 205 YMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 ++TH ++++ + V +++K I+ GT SD+ D Sbjct: 198 VLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 110 bits (278), Expect = 3e-25 Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 11/209 (5%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL--NLAKGKQNF 86 ++ +N + GE+ G +G +G GK+ +R + L+ SG +V G + K ++ Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR-- 66 Query: 87 AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146 +G++ Q+ ++ +T +EN+ M + LP D E + + L E A+ Sbjct: 67 ----SIGIVPQYASVDEDLTGRENLEM-MGRLYGLPKDEAEERAEELLELFELG-EAADR 120 Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206 SGGM +R+ +A +L PD+LFLDEPT+GLDP + L+ G+++ + Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK-EEGVTILL 179 Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTI 235 TH + C+R+A+I I+ EGT Sbjct: 180 TTHYMEEADKLCDRIAIIDHGRIIAEGTP 208 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 109 bits (275), Expect = 6e-25 Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 7/195 (3%) Query: 44 VIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFS 103 ++G SG GK+ L+R + G SG + + GE + + ++FQ ALF Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-----PHLRHINMVFQSYALFP 55 Query: 104 SMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLAR 163 MTV+EN++ +K +P I+ V + +V L E A+ P QLSGG +RV+LAR Sbjct: 56 HMTVEENVAFGLKMR-KVPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALAR 113 Query: 164 ALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAV 223 AL P +L LDEP S LD ++ L ++ LG++ +THD ++ +R+A+ Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173 Query: 224 IQKKGIMKEGTISDI 238 ++K I + GT +I Sbjct: 174 MRKGKIAQIGTPEEI 188 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 109 bits (274), Expect = 7e-25 Identities = 64/189 (33%), Positives = 106/189 (56%), Gaps = 4/189 (2%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L+N+N I +GE++ ++G SG GKS ++ ILG+ G+++ G+ L +G++ Sbjct: 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFL 78 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148 +G++FQ L S TV +N++ P+ + +P V + VGL A+ +P Sbjct: 79 RRHIGMVFQDHRLLSDRTVYDNVAFPL-RIIGVPPRDANERVSAALEKVGL-EGKAHALP 136 Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208 QLSGG +RV++ARA+ P LL DEPT LDP + + +L + + G +V + T Sbjct: 137 MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEF-NRRGTTVLVAT 195 Query: 209 HDLNNLIST 217 HD+ NL+ T Sbjct: 196 HDI-NLVET 203 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 109 bits (274), Expect = 7e-25 Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 10/230 (4%) Query: 13 ILSVRNLTIELNN-RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 IL R+L + L IN +GE++ ++G +G GKS L G++ SGEV Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISM-PIKEHLNLPADLIEH 128 + GE + K K +G++FQ+ LF+ TV+E+++ P+ +L L + +E Sbjct: 61 IKGEPIKYDK-KSLLEVRKTVGIVFQNPDDQLFAP-TVEEDVAFGPL--NLGLSKEEVEK 116 Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188 V + VG+ N P LSGG KRV++A LA+ P+++ LDEPTSGLDP+ A + Sbjct: 117 RVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 KLL L G+++ + THD++ + ++V V+ I+KEGT ++ Sbjct: 176 IMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 109 bits (273), Expect = 9e-25 Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 13 ILSVRNLT-IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 ++ R+L ++ LNNIN R + VIG +G GKS L R G++ SG V Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISM-PIKEHLNLPADLIEH 128 + GE + ++ F +G++FQ+ +FS TV+++I+ PI +L L + + H Sbjct: 63 IRGEPITKENIREVRKF---VGLVFQNPDDQIFSP-TVEQDIAFGPI--NLGLDEETVAH 116 Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188 V + + ++GL E + +P LSGG KRV++A +A++P +L LDEPT+GLDP +E Sbjct: 117 RVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 L L + G++V TH L+ + + + V+ K I+ GT+ +I D Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 108 bits (273), Expect = 1e-24 Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 3 LNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL 62 LN PS ++ +R ++ + + +++N++L I GE L ++G SG GK+ ++R I G Sbjct: 4 LNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63 Query: 63 IPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122 SG + + G+ + + + +FQ ALF MTV EN++ ++ P Sbjct: 64 ETPDSGRIMLDGQDITHVPAENRH-----VNTVFQSYALFPHMTVFENVAFGLRMQ-KTP 117 Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 A I V + +V L E A P QLSGG +RV++ARA+ P +L LDE S LD Sbjct: 118 AAEITPRVMEALRMVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 ++ L L+ LG++ +THD ++ +R+ V++ I ++GT +I Sbjct: 177 YKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 108 bits (272), Expect = 1e-24 Identities = 62/225 (27%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF-A 87 L+NI+ ++ G + ++G +G+GKS LM+ L+ SG + + G H+ G +N Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 Query: 88 FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 K+ ++FQ LF + TV +++ K + D + + VGL + + Sbjct: 83 LRKKVSLVFQFPEAQLFEN-TVLKDVEFGPK-NFGFSEDEAKEKALKWLKKVGLSEDLIS 140 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 PF+LSGG ++RV++A +A +P++L LDEP +GLDP +E +L + + G +V Sbjct: 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVI 199 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYF 250 ++TH+++++ + V V++ ++K + +I S+ W++ ++ Sbjct: 200 LVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF-SDKEWLKKHY 243 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 108 bits (272), Expect = 1e-24 Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 18/207 (8%) Query: 27 IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN-LAKGKQN 85 +L ++L I +GEI+ ++GSSG+GKS L+ + GL SGEV G+ L+ L+ ++ Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78 Query: 86 FAFSAKLGVLFQHGALFSSMTVQENISMP-------IKEHLNLPADLIEHIVHTKIAIVG 138 + KLG ++Q L T EN++MP +KE +++E VG Sbjct: 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEK--------VG 130 Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198 L N P +LSGG +RV++ARAL P L+ DEPT LD A+ L+++L Sbjct: 131 LE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189 Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQ 225 L S ++THDL L +RV ++ Sbjct: 190 ELNTSFLVVTHDL-ELAKKLDRVLEMK 215 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 107 bits (270), Expect = 3e-24 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 6/213 (2%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGKQNFA 87 L ++NL I G IG +G+GKS +M+ + GL G V+V + + +K K Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 Query: 88 FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 K+G++FQ LF TV ++++ ++ + + E + K+A+VG+ Sbjct: 83 IRKKVGLVFQFPESQLFEE-TVLKDVAFG-PQNFGVSQEEAEALAREKLALVGISESLFE 140 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 PF+LSGG ++RV++A LA++P +L LDEPT+GLDP +E L KL H G+++ Sbjct: 141 KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIV 199 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 ++TH ++++ + + V V++K ++ G DI Sbjct: 200 LVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 107 bits (268), Expect = 3e-24 Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGKQNFA 87 + + +L I GEI ++G SG+GKS ++R + LI G+V + G + ++ + Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103 Query: 88 FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147 K+ ++FQ AL MTV +N + + E + A+ + VGL A+ Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGM-ELAGINAEERREKALDALRQVGLE-NYAHSY 161 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 P +LSGGM +RV LARALAI+PD+L +DE S LDP+ E L+KL+ ++ I Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221 Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVD--SNDPWIRSYF 250 +HDL+ + +R+A++Q +++ GT +I++ +ND ++R++F Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPAND-YVRTFF 265 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 106 bits (267), Expect = 5e-24 Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 15/242 (6%) Query: 6 IPSQEEKILSVRNLTIE-----------LNNRIILNNINLDILRGEILGVIGSSGTGKSI 54 +P +L V L + +++ +++ NI+ + GE LG++G SG+GKS Sbjct: 268 LPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKST 327 Query: 55 LMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQ--HGALFSSMTVQENIS 112 +L LI GE+ G+ L+ +Q ++ V+FQ + +L + V + I Sbjct: 328 TGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIE 386 Query: 113 MPIKEHL-NLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDL 171 ++ H L A E V + VGL PET + P + SGG +R+++ARAL + P L Sbjct: 387 EGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSL 446 Query: 172 LFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMK 231 + LDEPTS LD + LL L+ L+ I+HDL+ + + C++V V+++ +++ Sbjct: 447 IILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 Query: 232 EG 233 +G Sbjct: 507 QG 508 Score = 84.0 bits (208), Expect = 4e-17 Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 18/230 (7%) Query: 13 ILSVRNLTIELNN----RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--- 65 +L++ NL++ R ++N+++L I GE L ++G SG+GKS+ IL L+P Sbjct: 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPV 64 Query: 66 --VSGEVKVLGEHLNLAKGKQNFAFSA-KLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122 SG+++ GE L A + K+ ++FQ S+ + + E L+L Sbjct: 65 VYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP--MVSLNPLHTLEKQLYEVLSLH 122 Query: 123 ADLIEHIVHTKIAI----VGL--PPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176 + +I VG+ + P QLSGG +RV +A AL P+LL DE Sbjct: 123 RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182 Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 PT+ LD + +LL +L+ L + + ITH+L+ + +RVAV+Q Sbjct: 183 PTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 106 bits (266), Expect = 6e-24 Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 22/234 (9%) Query: 18 NLTIELNN-------RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 N+ I+L ++++N+++ I RGE G++G +G GKS + R +LG+I G++ Sbjct: 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 VLGE + + A +GV+ Q L TV+EN+ + + + IE ++ Sbjct: 62 TVLGEPV---PSRARLA-RVAIGVVPQFDNLDPEFTVRENL-LVFGRYFGMSTREIEAVI 116 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA---- 186 + + L + A++ LSGGM +R++LARAL DP LL LDEPT+GLDP A Sbjct: 117 PSLLEFARLESK-ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 E LL + G ++ + TH + C+R+ V++ + EG ++D Sbjct: 176 ERLRSLL-----ARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 106 bits (267), Expect = 6e-24 Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 28/258 (10%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 + +LSV L + + +NN+NL++ EI+ +IG +G GK+ + + G G + Sbjct: 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 + G+H+ G Q A++GV+ FQH LF MTV EN + + +H L L Sbjct: 63 LLRGQHIEGLPGHQ----IARMGVVRTFQHVRLFREMTVIEN--LLVAQHQQLKTGLFSG 116 Query: 129 IVHTK----------------IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLL 172 ++ T + VGL E AN L+ G +R+ +AR + P++L Sbjct: 117 LLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175 Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232 LDEP +GL+P +E D+L+ +LR+ ++V +I HD+ ++ +R+ V+ + + Sbjct: 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 Query: 233 GTISDIVDSNDP-WIRSY 249 GT +I N+P I++Y Sbjct: 236 GTPEEI--RNNPDVIKAY 251 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 106 bits (266), Expect = 6e-24 Identities = 66/213 (30%), Positives = 120/213 (56%), Gaps = 8/213 (3%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNL-AKGKQNFA 87 L IN++I +GE+ ++G +G GKS L + + G++ SG + G+ ++ KG Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 Query: 88 FSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 S +G++FQ LFS+ +V +++S +L LP D + V + G+ + Sbjct: 82 ES--VGMVFQDPDNQLFSA-SVYQDVSFGAV-NLKLPEDEVRKRVDNALKRTGIEH-LKD 136 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 LS G KRV++A L ++P +L LDEPT+GLDP+ E KLL++++ LGL++ Sbjct: 137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTII 196 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 + THD++ + C+ V V+++ ++ +G ++ Sbjct: 197 IATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 106 bits (265), Expect = 7e-24 Identities = 70/239 (29%), Positives = 134/239 (56%), Gaps = 12/239 (5%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 E + ++ L + +N++ IL +I + I I G++G SG+GKS L++ + LI ++ Sbjct: 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI 67 Query: 71 KVLGEHLNLAKGKQNFAFSA-----KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125 KV G+ L GK F A ++G++FQ F +++ +NI+ P+K H Sbjct: 68 KVDGKVLYF--GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKRE 125 Query: 126 IEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 I+ IV + VGL E + + QLSGG +R+++ARALA+ P +L +DEPTS +D Sbjct: 126 IKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 + ++ +KL+ +L++ +++ +++H+ + + VA + +++ G+ ++I S Sbjct: 186 IVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 105 bits (264), Expect = 1e-23 Identities = 67/214 (31%), Positives = 127/214 (59%), Gaps = 8/214 (3%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L+N+N++I GE +G+IG +G+GKS L++ + GL+ SG++ + G +++ K + Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG--VDITDKKVKLSD 80 Query: 89 -SAKLGVLFQHG--ALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET-A 144 K+G++FQ+ LF T++++I+ +L L + IE+ V + IVGL E Sbjct: 81 IRKKVGLVFQYPEYQLFEE-TIEKDIAFGPI-NLGLSEEEIENRVKRAMNIVGLDYEDYK 138 Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204 + PF+LSGG +RV++A +A++P +L LDEPT+GLDP +E + +L +++ Sbjct: 139 DKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI 198 Query: 205 YMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 +++H + ++ +R+ V+ K +GT ++ Sbjct: 199 ILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 105 bits (264), Expect = 1e-23 Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 17 RNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEH 76 +N++ +L+NI+L+I +GE++ +IG SG+GKS L+R I L SG++ V G Sbjct: 5 KNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK 64 Query: 77 LNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM-PIKEHLNLPADLIEHIVHTKIA 135 +N K + + G++FQ LF +T EN+ P++ + E +A Sbjct: 65 VNDPKVDER-LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEE-AEKQARELLA 122 Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195 VGL E A+ P +LSGG +RV++ARALA+ P L+ DEPTS LDP E K++ Sbjct: 123 KVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181 Query: 196 LRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 L G+++ ++TH++ +R+ I K I ++G ++ Sbjct: 182 LAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 104 bits (262), Expect = 2e-23 Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 7/208 (3%) Query: 16 VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV-SGEVKVLG 74 ++N++ + ++IIL+++NL I +G++ +IG SG+GKS L+ I+GL+ + SG+V + G Sbjct: 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNG 59 Query: 75 -EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 E L K + KLG LFQ+ AL + TV+EN+ + +K + E Sbjct: 60 KETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA- 118 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 + VGL ++LSGG +RV+LARA+ DP L+ DEPT LDP +E LL Sbjct: 119 LEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLL 177 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRV 221 ++L G ++ ++THD + +RV Sbjct: 178 LELNDE-GKTIIIVTHDP-EVAKQADRV 203 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 103 bits (258), Expect = 6e-23 Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 15/220 (6%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84 ++ ++N ++ + GE G++G +G GKS + R ILG+ +G++ VLG + + Sbjct: 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP----AR 108 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144 A++GV+ Q L TV+EN+ + + + IE ++ + + L + A Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENL-LVFGRYFGMSTREIEAVIPSLLEFARLESK-A 166 Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI--KLRHSL-- 200 + LSGGM +R++LARAL DP LL LDEPT+GLDP A + LI +LR L Sbjct: 167 DARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA-----RHLIWERLRSLLAR 221 Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 G ++ + TH + C+R+ V++ + EG ++D Sbjct: 222 GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 102 bits (256), Expect = 1e-22 Identities = 73/215 (33%), Positives = 117/215 (54%), Gaps = 15/215 (6%) Query: 6 IPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGL 62 + + KI VRNL L NINLDI + ++ IG SG GKS L+R + L Sbjct: 7 VATAPSKI-QVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL 65 Query: 63 IP--RVSGEVKVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHL 119 P R GE+ + GE N+ KQ+ A AK+G++FQ F M++ +NI+ ++ Sbjct: 66 YPEQRAEGEILLDGE--NILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE 122 Query: 120 NLP-ADLIEHIVH--TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176 L A++ E + TK A+ + + + LSGG +R+ +AR +AI P++L LDE Sbjct: 123 KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDE 182 Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 P S LDPI+ ++L+ +L+ +V ++TH++ Sbjct: 183 PCSALDPISTGRIEELITELKQD--YTVVIVTHNM 215 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 102 bits (255), Expect = 1e-22 Identities = 72/233 (30%), Positives = 115/233 (49%), Gaps = 11/233 (4%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 E L+V +L +L ++L G+++ +IGSSG+GKS +R I L G + Sbjct: 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI 62 Query: 71 KVLGEHLNLAKG----------KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120 V G+ +NL + Q +L ++FQH L+S MTV EN+ + L Sbjct: 63 VVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 122 Query: 121 LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 L +A VG+ P LSGG +RVS+ARALA++P++L DEPTS Sbjct: 123 LSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSA 182 Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 LDP E +++ +L G ++ ++TH++ + V + + I +EG Sbjct: 183 LDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 101 bits (253), Expect = 2e-22 Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 14/244 (5%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 + +L V L+ +++ D+ GE+LG++G SG+GKS L+ + G + G Sbjct: 1 KPLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA 60 Query: 71 K------VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124 E L++ ++ + G + Q+ M V + I E L Sbjct: 61 TYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGAN--IGERLMAIGA 118 Query: 125 ----LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 I H + V + P + +P SGGM +R+ +AR L P L+F+DEPT G Sbjct: 119 RHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGG 178 Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 LD LL L LGL+V ++THDL R+ V+Q+ +++ G ++D Sbjct: 179 LDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238 Query: 241 SNDP 244 DP Sbjct: 239 --DP 240 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 101 bits (253), Expect = 2e-22 Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 15/235 (6%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 + RN+ ++++++ ++ + RGE G++G +G GK+ +R +LGL +G + Sbjct: 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 + GE + + A ++GV+ Q L TV+EN+ + + L A +V Sbjct: 65 SLCGEPV---PSRARHA-RQRVGVVPQFDNLDPDFTVRENLLV-FGRYFGLSAAAARALV 119 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190 + L A+ +LSGGM +R++LARAL DPD+L LDEPT+GLDP A Sbjct: 120 PPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA----- 173 Query: 191 KLLI--KLRHSL--GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 + L+ +LR L G ++ + TH + C+R+ VI++ + EG +++S Sbjct: 174 RHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 100 bits (251), Expect = 3e-22 Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 10/224 (4%) Query: 6 IPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GL 62 P +E IL V++L+I + +N+I++DI + + +IG SG GKS +R I L Sbjct: 14 FPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL 73 Query: 63 IPRVSGEVKVLGEHLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121 IP E ++L E LN+ N ++G++FQ F ++ NI+ +K Sbjct: 74 IPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGER 132 Query: 122 PADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 +++ IV + L E + + LSGG +R+ +AR LA+ P +L LDEP Sbjct: 133 RKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVA 222 S LDPI+ + ++L+ +L+ S+ ++TH++ + +R A Sbjct: 193 SALDPISNAKIEELITELKEE--YSIIIVTHNMQQALRVSDRTA 234 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 100 bits (251), Expect = 3e-22 Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 13/236 (5%) Query: 11 EKILSVRNLTIE------LNNRII-----LNNINLDILRGEILGVIGSSGTGKSILMRGI 59 E IL VRNL L NR+ + ++ D+ GE L ++G SG+GKS R + Sbjct: 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRAL 370 Query: 60 LGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQ--HGALFSSMTVQENISMPIKE 117 L L+ GE+ G+ ++ + A + +FQ + +L TV ++I P++ Sbjct: 371 LRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177 H LP V + VGL PE A P + SGG +R+ +ARALA++P ++ DE Sbjct: 431 HGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEA 490 Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 S LD + LL+ L+ G++ I+HD+ + +RVAV+ I++ G Sbjct: 491 VSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546 Score = 89.1 bits (221), Expect = 1e-18 Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 25/251 (9%) Query: 10 EEKILSVRNLTI----ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR 65 +L+V NL I E + N++ + RGE L ++G SG+GKS+ ++ L+ + Sbjct: 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 68 Query: 66 VSGEVKVLGEHLNLAKGKQNFAFS------------AKLGVLFQH--GALFSSMTVQENI 111 G V+ + L + +Q S A + ++FQ +L TV E I Sbjct: 69 AGGLVQC-DKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI 127 Query: 112 SMPIKEHLNLPADLIEHIVHTK--IAIVGLPPETANL--MPFQLSGGMIKRVSLARALAI 167 + I+ H + E +V K + V +P L P QLSGGM +RV +A AL+ Sbjct: 128 AESIRLHQGASRE--EAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 185 Query: 168 DPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKK 227 P +L DEPT+ LD + +L+ L+ + + V ITHD+ + +RV V+ + Sbjct: 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQG 245 Query: 228 GIMKEGTISDI 238 ++ G++ I Sbjct: 246 EAVETGSVEQI 256 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 100 bits (251), Expect = 4e-22 Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 22/222 (9%) Query: 11 EKILSVRNLTIEL----NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66 E I+ V +L + + IL + L + RGE + +IG SG+GKS L+ + GL Sbjct: 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS 63 Query: 67 SGEVKVLGEHLNLAKGKQNFAFSAK-LGVLFQHGALFSSMTVQENISMPI-------KEH 118 SGEV ++G+ L+ + AK +G +FQ L ++ EN+ +P ++ Sbjct: 64 SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS 123 Query: 119 LNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 N L+E + GL + + +P QLSGG +RV+LARA PD+LF DEPT Sbjct: 124 RNGAKALLEQL--------GLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNR 220 LD ++ LL L G ++ ++THD L + C+R Sbjct: 175 GNLDRQTGDKIADLLFSLNREHGTTLILVTHD-LQLAARCDR 215 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 99.8 bits (249), Expect = 6e-22 Identities = 70/229 (30%), Positives = 127/229 (55%), Gaps = 16/229 (6%) Query: 11 EKILSVRNLTIELN---NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 I+ V+NLT + + LN+++ + +GE L +IG +G+GKS +R I GL+ S Sbjct: 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES 61 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLI 126 G++ + G+ L + + K+G++FQ+ F TV+++++ + E+ +P + + Sbjct: 62 GQIIIDGDLLTE---ENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL-ENKGIPHEEM 117 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 + V+ + +VG+ + P +LSGG +RV++A A+A+ P ++ LDE TS LDP Sbjct: 118 KERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235 E K + +R ++V ITHDL+ ++ +RV V MK G + Sbjct: 177 LELIKTIKGIRDDYQMTVISITHDLDE-VALSDRVLV------MKNGQV 218 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 99.1 bits (247), Expect = 1e-21 Identities = 54/209 (25%), Positives = 115/209 (55%), Gaps = 5/209 (2%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG-EHLNLAKGKQNFA 87 ++++N + +G+ ++G +G+GKS L++ I L+ +G V V + K K Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 Query: 88 FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 ++G++FQ LF +E I P ++ + D +++ H + +G + + Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGP--KNFKMNLDEVKNYAHRLLMDLGFSRDVMS 140 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 PFQ+SGG ++++++ LA++PD++ LDEPT+GLDP + + +LL L+ ++ Sbjct: 141 QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTII 200 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGT 234 +++HD+N + + V V+++ I+ + + Sbjct: 201 LVSHDMNEVARYADEVIVMKEGSIVSQTS 229 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 99.1 bits (247), Expect = 1e-21 Identities = 55/206 (26%), Positives = 107/206 (51%), Gaps = 14/206 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI-----PRVSG 68 + NL + + ++ ++L I + + ++G SG GKS L+R L+ RV G Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG 64 Query: 69 EVKVLGEHLNLAKGKQN-FAFSAKLGVLFQHGALFSSMTVQENISMPIK-EHLNLPADLI 126 EV++ G N+ + ++G++FQ+ F +T+ +N+++ +K L + Sbjct: 65 EVRLFGR--NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122 Query: 127 EHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 + V + L E + + P LSGG +R+ +ARALA+ P +L +DEPT+ +DP Sbjct: 123 DERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP 182 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITH 209 + + ++LL +L+ ++ ++TH Sbjct: 183 VGTAKIEELLFELKKE--YTIVLVTH 206 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 98.4 bits (245), Expect = 2e-21 Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 21/219 (9%) Query: 38 RGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-------HLNLAKGKQNFAFSA 90 +GE+LG++G +G GK+ L+R ILGLIP G VKV G H+ + FA+ Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDF 64 Query: 91 KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQ 150 + V H + + P D + + T E A+ + Sbjct: 65 PISV--AHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT---------ELADRPVGE 113 Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210 LSGG +RV +ARALA P +L LDEP +GLD E +L I+L + G ++ M THD Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTHD 172 Query: 211 LNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSY 249 L ++TC+RV ++ + ++ +GT + D PW+ ++ Sbjct: 173 LAQAMATCDRVVLLNGR-VIADGTPQQLQDP-APWMTTF 209 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 98.2 bits (244), Expect = 2e-21 Identities = 66/216 (30%), Positives = 119/216 (55%), Gaps = 10/216 (4%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEH---LNLAKGKQN 85 LNN +L + ++ VIG++G+GKS +++ GLI +G+ ++G++ NL K K+ Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT-IVGDYAIPANLKKIKEV 85 Query: 86 FAFSAKLGVLFQ--HGALFSSMTVQENISM-PIKEHLNLPADLIEHIVHTKIAIVGLPPE 142 ++G++FQ LF T++++I+ P+ +L V + +V LP + Sbjct: 86 KRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPV--NLGENKQEAYKKVPELLKLVQLPED 142 Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL 202 PF+LSGG +RV+LA +A+D + L LDEPT GLDP E+F L +L Sbjct: 143 YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK 202 Query: 203 SVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 + M+TH+++ ++ + V V+ + ++ G+ +I Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 97.9 bits (244), Expect = 3e-21 Identities = 77/232 (33%), Positives = 120/232 (51%), Gaps = 14/232 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + V +LT + L+ ++ + +G I+G +G +G GKS M+ I G +P SG V+V Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62 Query: 74 GEH-LNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 GE L K Q +G L +H L+ M V+E + I + L++ V Sbjct: 63 GEDVLQNPKEVQRN-----IGYLPEHNPLYLDMYVREYLQF-IAGIYGMKGQLLKQRVEE 116 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 I +VGL PE + QLS G +RV LA+AL DP +L LDEPT+GLDP E Sbjct: 117 MIELVGLRPEQHKKIG-QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN- 174 Query: 193 LIKLRHSLGLSVYMI--THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 +IK ++G +I TH + + + C+RV +I K I+ + + ++ +N Sbjct: 175 VIK---NIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAAN 223 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 97.6 bits (243), Expect = 3e-21 Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 3/186 (1%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN-LAKGKQNF 86 +L+N++ I GE++ ++GSSG+GKS L+ + GL SG+V G+ ++ L+ + Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 Query: 87 AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146 + KLG ++Q L T EN++MP+ PA+ I +A VGL AN Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAE-INSRALEMLAAVGLE-HRANH 141 Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206 P +LSGG +RV++ARAL +P L+ DEPT LD A+ +LL +L G + + Sbjct: 142 RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLV 201 Query: 207 ITHDLN 212 +THDL Sbjct: 202 VTHDLQ 207 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 97.1 bits (241), Expect = 4e-21 Identities = 71/236 (30%), Positives = 130/236 (55%), Gaps = 10/236 (4%) Query: 12 KILSVRNLTIELNNRIILNNIN---LDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68 KIL V NL + +N +N I +GE + +IG +G+GKS R I GL G Sbjct: 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG 62 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLIE 127 +VK+ GE L + + K+G++FQ+ F TV+++++ ++ ++I+ Sbjct: 63 KVKIDGELLT---AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK 119 Query: 128 HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 + +A+ L +T P +LSGG +RV++A +A+ P+++ LDE TS LDP + Sbjct: 120 RVDEALLAVNMLDFKTRE--PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 E +++ +++ L+V ITHDL+ S+ +R+ V++ I+KE S++ +++ Sbjct: 178 EIMRVIHEIKEKYQLTVLSITHDLDEAASS-DRILVMKAGEIIKEAAPSELFATSE 232 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 97.2 bits (242), Expect = 4e-21 Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 17/190 (8%) Query: 26 RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQN 85 + IL +I++ G I ++G SG GKS L++ I LI G + + G + K Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI---KTIDV 72 Query: 86 FAFSAKLGVLFQHGALFSSMTVQENI----SMPIKEHLNLPADLIEHIVHTKIAIVGLPP 141 K+G++FQ LF TV++NI + +++++ V ++IVGL Sbjct: 73 IDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVD---------VEYYLSIVGLNK 122 Query: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201 E A LSGG +RVS+AR LA +P++L LDEPTS LDP + E ++L++KL++ + Sbjct: 123 EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN 182 Query: 202 LSVYMITHDL 211 L+V ITH++ Sbjct: 183 LTVIWITHNM 192 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 97.2 bits (243), Expect = 4e-21 Identities = 63/237 (26%), Positives = 117/237 (49%), Gaps = 30/237 (12%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L V NL + IL ++L++ +GE+ V+G +G GK+ L++ ++GL+P SG +++ Sbjct: 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 GE + + A+ G+ + Q +F +TV+EN+ + LP Sbjct: 61 GEDITKLPPHER----ARAGIAYVPQGREIFPRLTVEENLLTGLA---ALPR------RS 107 Query: 132 TKIAIVGLPPETANLMPF----------QLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181 KI P E L P LSGG +++++ARAL P LL LDEPT G+ Sbjct: 108 RKI-----PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162 Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 P ++ +++ +LR G+++ ++ L+ +R V+++ ++ G ++ Sbjct: 163 QPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 97.1 bits (242), Expect = 4e-21 Identities = 61/210 (29%), Positives = 114/210 (54%), Gaps = 14/210 (6%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIP--R 65 +SV++L + + L INLDI ++ +IG SG GKS +R + LIP + Sbjct: 1 MGKISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK 60 Query: 66 VSGEVKVLGEHLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124 + GEV + G+ ++ K + ++G++FQ F M++ +N++ + H Sbjct: 61 IEGEVLLDGQ--DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKK 117 Query: 125 LIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181 ++ IV + L E + + LSGG +R+ +ARALA++P++L +DEPTS L Sbjct: 118 KLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSAL 177 Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 DPI+ + ++L+ +L+ ++ ++TH++ Sbjct: 178 DPISTLKIEELIQELKKD--YTIVIVTHNM 205 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 97.0 bits (242), Expect = 4e-21 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 25/222 (11%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGL--IPRVSGEVKVLGEHLNLAKG--- 82 L +I LD +GE L ++G SG GKS L+R +L L +PR SG + + G H + +K Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLR-VLNLLEMPR-SGTLNIAGNHFDFSKTPSD 74 Query: 83 KQNFAFSAKLGVLFQHGALFSSMTVQEN-ISMPI------KEHLNLPADLIEHIVHTKIA 135 K +G++FQ L+ +TVQ+N I P K+ A+ + + ++ Sbjct: 75 KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAE--KLLERLRLK 132 Query: 136 IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLI 194 A+ P LSGG +RV++ARAL ++P +L DEPT+ LDP I A+ +I Sbjct: 133 ------PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS--II 184 Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236 + G++ ++TH++ T +RV ++ I+++G S Sbjct: 185 RELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 97.0 bits (241), Expect = 4e-21 Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 12/239 (5%) Query: 8 SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 + E I+ NL + + LNNIN+ IL+ I +IG SG GKS +R + + V Sbjct: 2 PKNEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVE 61 Query: 68 GEVKVLGEHLNLAKG--KQNF---AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122 G +K+ G + K NF K+G++FQ F M++ +NIS K H Sbjct: 62 G-IKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKD 119 Query: 123 ADLIEHIVHTKIAIVGLPPETA---NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179 ++ IV + L E N LSGG +R+ +AR LAI+P+++ +DEPTS Sbjct: 120 KKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS 179 Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 LDPI+ + ++L+I L+ S ++ ++TH++ +R A I +E + ++ Sbjct: 180 ALDPISTGKIEELIINLKES--YTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 96.0 bits (239), Expect = 8e-21 Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 7/185 (3%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87 +L +N RGE+L ++G++G GKS L+ + GL+ SG V + GE L+ ++ K Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR-KGLLE 65 Query: 88 FSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 ++G++FQ LF++ V ++++ +L L +E V + VG Sbjct: 66 RRQRVGLVFQDPDDQLFAA-DVDQDVAFGPL-NLGLSEAEVERRVREALTAVGAS-GLRE 122 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 LSGG KRV++A A+A+ PD+L LDEPT+GLDP E+ +L +LR G++V Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVV 181 Query: 206 MITHD 210 + THD Sbjct: 182 ISTHD 186 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 95.7 bits (238), Expect = 1e-20 Identities = 66/241 (27%), Positives = 130/241 (53%), Gaps = 32/241 (13%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 L+ +NL R ++ +++L + GEI+G++G +G GK+ ++G++PR +G + + Sbjct: 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 Query: 73 LGEHLNL----AKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS--MPIKEHLNLPA--- 123 E ++L A+ ++ +G L Q ++F ++V +N+ + I++ L+ Sbjct: 63 DDEDISLLPLHARARRG------IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED 116 Query: 124 ---DLIE--HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 +L+E HI H + + M LSGG +RV +ARALA +P + LDEP Sbjct: 117 RANELMEEFHIEHLR-----------DSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 +G+DPI+ + +++ LR S GL V + H++ ++ C R ++ + ++ GT ++I Sbjct: 166 AGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 Query: 239 V 239 + Sbjct: 225 L 225 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 95.5 bits (237), Expect = 1e-20 Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 13/206 (6%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---IPRVSGE 69 I NL + + L +IN+ I + +I +IG+SG GKS +R + I ++ G Sbjct: 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61 Query: 70 VKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP-ADLIEH 128 V++ G+ + K + A +G++FQ +F ++ ENIS K H + D E Sbjct: 62 VEIEGKDV---KNQDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEA 117 Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 +V + VGL E + + LSGG +R+ +ARALAI P LL LDEPTS LDPI+ Sbjct: 118 LVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPIS 177 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211 + ++LL +L H+ LS+ M+TH++ Sbjct: 178 SGVIEELLKELSHN--LSMIMVTHNM 201 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 95.2 bits (237), Expect = 1e-20 Identities = 73/244 (29%), Positives = 121/244 (49%), Gaps = 14/244 (5%) Query: 8 SQEEKILSVRNLTIELN----NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63 Q + +L V++L + + + +N++N + GE LG++G SG+GKS ++GL+ Sbjct: 7 QQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL 66 Query: 64 P---RVSGEVKVLG-EHLNLAKGKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKE 117 R+ G G E LNL + + N + ++ ++FQ +L M V E + + Sbjct: 67 AANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 126 Query: 118 HLNL-PADLIEHIVHTKIAIVGLPP--ETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174 H + A+ E V A V +P + + P + SGGM +RV +A AL P LL Sbjct: 127 HKGMSKAEAFEESVRMLDA-VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 185 Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 DEPT+ LD + LL +L+ ++ MITHDL + C++V V+ M+ G Sbjct: 186 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 Query: 235 ISDI 238 D+ Sbjct: 246 ARDV 249 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 95.1 bits (236), Expect = 2e-20 Identities = 72/254 (28%), Positives = 131/254 (51%), Gaps = 16/254 (6%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---IP--R 65 E I+S +++ + N L+ I+LD E+ +IG SG GKS +R + + I + Sbjct: 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61 Query: 66 VSGEVKVLGEHLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124 ++GE+K G+ N+ K + ++G++FQ F +V +N++ +K + Sbjct: 62 ITGEIKFEGQ--NIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKE 118 Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181 LI+ V + + ET + + SGG +R+ +ARALA+ P ++ LDEPTS L Sbjct: 119 LIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSAL 178 Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 DPI++ E ++ L++L+H + M+TH+L ++ A + +++ G ++ + Sbjct: 179 DPISSSEIEETLMELKHQ--YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 Query: 242 NDPWIRS-YFN-RF 253 I S Y N RF Sbjct: 237 PKKQITSDYLNGRF 250 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 95.1 bits (237), Expect = 2e-20 Identities = 69/216 (31%), Positives = 109/216 (50%), Gaps = 16/216 (7%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L + ++ R +LN ++L I G+ + V+G SG GKS L+R + GL +GE+ L Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL--L 70 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 LA+ +++ ++FQ L V +N+ + +K A Sbjct: 71 AGTAPLAEARED------TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA-------LQA 117 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 +A VGL + AN P LSGG +RV+LARAL P LL LDEP LD + E L+ Sbjct: 118 LAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGI 229 L G +V ++THD++ ++ +RV +I++ I Sbjct: 177 ESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 94.8 bits (235), Expect = 2e-20 Identities = 62/235 (26%), Positives = 121/235 (51%), Gaps = 11/235 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 ++ NLT+ + +L+ +++ + ++G +G+GK+ +R + + +VSG + Sbjct: 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-YRYS 80 Query: 74 GEHLNLAKGKQNF----AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI 129 G+ L + N+ F ++G+LFQ F M++ +N+ ++ H +P + Sbjct: 81 GDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGV 139 Query: 130 VHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 ++ VGL + + PF+LSGG + + LAR LA++P++L LDEPTS LDP Sbjct: 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 E+ ++ + L L+V ++TH+L +R A+ +++EG + S Sbjct: 200 EKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 94.8 bits (236), Expect = 2e-20 Identities = 71/218 (32%), Positives = 115/218 (52%), Gaps = 26/218 (11%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87 +L+N+NLDI GE +G++G SG+GKS L + + L G+V V G L +A Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA---W 528 Query: 88 FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH-TKIA-----IVGLPP 141 ++GV+ Q LFS ++++NI+ L P EH++H K+A I LP Sbjct: 529 LRRQMGVVLQENVLFSR-SIRDNIA------LCNPGAPFEHVIHAAKLAGAHDFISELPQ 581 Query: 142 ETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198 + + LSGG +R+++ARAL +P +L DE TS LD E + L+++ Sbjct: 582 GYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD----YESEALIMRNMR 637 Query: 199 SL--GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 + G +V +I H L+ + C+R+ V++K I + G Sbjct: 638 EICRGRTVIIIAHRLST-VRACDRIIVLEKGQIAESGR 674 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 94.4 bits (235), Expect = 2e-20 Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 24/252 (9%) Query: 16 VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75 V+NL + + + +L+ I+L++ GE++ +IG SG+GK+ L+R I L +G ++V Sbjct: 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDI 65 Query: 76 HLNLAK---GKQNF--AFSAKLGVLFQHGALFSSMTVQEN-ISMPI---KEHLNLPADLI 126 ++ A+ ++ +G +FQ+ LF TV EN I P+ E P + Sbjct: 66 TIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGE----PKEEA 121 Query: 127 EHIVHTKIAIVGLP-PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 +A VGL ET+ P +LSGG +RV++ARALA+ P+++ DEPTS LDP Sbjct: 122 TARARELLAKVGLAGKETS--YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP-- 177 Query: 186 AEEFDKLLIKLRHSLG---LSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI-VDS 241 E ++L +R L ++ ++TH+++ +R + + I+++G + D Sbjct: 178 -ELVGEVLNTIR-QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235 Query: 242 NDPWIRSYFNRF 253 P R + +F Sbjct: 236 QQPRTRQFLEKF 247 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 94.2 bits (234), Expect = 3e-20 Identities = 61/214 (28%), Positives = 111/214 (51%), Gaps = 11/214 (5%) Query: 6 IPSQEEKIL-SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LG 61 I + +K++ +NL + L NINLDI E+ +IG SG GKS ++ + + Sbjct: 16 IETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 Query: 62 LIPRVSGEVKVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120 L+P V K+L N+ + +G++FQ F ++ +N++ K H Sbjct: 76 LVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGI 134 Query: 121 LPADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEP 177 ++ IV + + E + + + LSGG +R+ +AR LAI+PD++ +DEP Sbjct: 135 KDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEP 194 Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 TS LDPI+ + ++L+ +L+ S+ ++TH++ Sbjct: 195 TSALDPISTLKVEELVQELKKD--YSIIIVTHNM 226 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 93.7 bits (233), Expect = 4e-20 Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 15/234 (6%) Query: 15 SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIP--RVSGE 69 SV+NL + ++ IL +INLDI + E+ IG SG GKS +R + +P +V GE Sbjct: 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE 66 Query: 70 VKVLGEHLNLAKGKQNFAF-SAKLGVLFQHGALFSSMTVQENISMPIKEH-LNLPADLIE 127 + + + +++ N AK+G++FQ F ++ +N++ K H L ++ Sbjct: 67 LDI--DGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLD 123 Query: 128 HIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 IV + VGL E + + F+LSGG +R+ +ARA+A+ P +L +DEP S LDP+ Sbjct: 124 EIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 A + L+ +L+ ++ ++TH + +RVA Q I++ T +I Sbjct: 184 ATNVIENLIQELK--KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 93.6 bits (233), Expect = 5e-20 Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 14/223 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L +NL+ + +NNI+L + + + G++G +G GKS L++ I G++ SGE+ Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD 60 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G K+G L + L+ ++T +EN+ + L LP I+ +++ Sbjct: 61 GHPWTRKDLH-------KIGSLIESPPLYENLTARENLKVHTT-LLGLPDSRIDEVLN-- 110 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 IV L T Q S GM +R+ +A AL P LL LDEPT+GLDPI +E + L Sbjct: 111 --IVDL-TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE-L 166 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236 I+ G++V + +H L+ + + + +I + + +G I+ Sbjct: 167 IRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 93.1 bits (232), Expect = 7e-20 Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 18/219 (8%) Query: 14 LSVRNLTIELNNR--IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 L L++ R L ++ + GE + ++G SG GKS L+ +LG + G + Sbjct: 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 V G L A + ++ + QH LF+ T+ ENI + + I + Sbjct: 381 VNGVPLADADADS---WRDQIAWVPQHPFLFAG-TIAENIRLARPD---ASDAEIRRALE 433 Query: 132 TKIA---IVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 + LP L+ LSGG +R++LARA D LL LDEPT+ LD Sbjct: 434 RAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224 + L L G +V ++TH L L +R+ V+ Sbjct: 494 EALVTEALRALAQ--GRTVLLVTHRL-ALAERADRIVVL 529 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 92.3 bits (230), Expect = 1e-19 Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 32/254 (12%) Query: 10 EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 ++ +LSVR LT R +++ D+ GE+LG++G SG+GK+ L+ + + +GE Sbjct: 3 DQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62 Query: 70 V------KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQE--NIS---MPIKE- 117 V L + L++ ++ + G + QH M V NI M + Sbjct: 63 VHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR 122 Query: 118 HL-NLPA---DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLF 173 H ++ A D +E V + + +P SGGM +R+ +AR L P L+F Sbjct: 123 HYGDIRATAGDWLER--------VEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVF 174 Query: 174 LDEPTSGLD-PIAAEEFDKLLIKLRHSLGLSVYMITHDLN--NLISTCNRVAVIQKKGIM 230 +DEPT GLD + A D LL L LGL+V ++THDL L++ +R+ V+++ ++ Sbjct: 175 MDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLA--HRLLVMKQGRVV 231 Query: 231 KEGTISDIVDSNDP 244 + G ++D DP Sbjct: 232 ESGLTDQVLD--DP 243 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 92.4 bits (230), Expect = 1e-19 Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 32/201 (15%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84 + +L+ ++LD+ GE + ++G SG+GKS L+ + GL+ + GEV + G ++ + Sbjct: 347 SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQD-- 404 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISMPIKE-------------HLNLPADLIEHIVH 131 ++ V Q LF + TV++N+ + + L + + Sbjct: 405 --ELRRRISVFAQDAHLFDT-TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLD 461 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 T + E LSGG +R++LARAL D +L LDEPT LD E Sbjct: 462 TVLG------EGGAR----LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESE--- 508 Query: 192 LLIKLRHSL-GLSVYMITHDL 211 LL L +L G +V +ITH L Sbjct: 509 LLEDLLAALSGKTVVVITHHL 529 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 92.2 bits (229), Expect = 1e-19 Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 25/249 (10%) Query: 7 PSQEEKILSVRNLTIELNNR-----IILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61 P ++ IL V+NL + + + LNNI+ + +I +IG+SG+GKS L+ G Sbjct: 15 PLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74 Query: 62 LIPRVSGEVKV----LGEHLN--------LAKGKQNFAFSAKL-GVLFQ--HGALFSSMT 106 LI G ++V +G+ N +K +NF + ++FQ LF T Sbjct: 75 LIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-T 133 Query: 107 VQENISM-PIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARAL 165 ++++I P+ L + + + + +GL PF LSGG +RV++A L Sbjct: 134 IEKDIMFGPVA--LGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGIL 191 Query: 166 AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225 AI P++L DEPT+GLDP E +L++ + + +V++ITH + +++ + V V+ Sbjct: 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMD 250 Query: 226 KKGIMKEGT 234 K I+K GT Sbjct: 251 KGKILKTGT 259 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 92.0 bits (228), Expect = 1e-19 Identities = 75/255 (29%), Positives = 127/255 (49%), Gaps = 19/255 (7%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + V++L+ N + I++DI R ++ +IG SG GKS ++ L I + G VKV Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIK-TLNRISELEGPVKVE 66 Query: 74 GE----HLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 G N+ + N ++G++FQ F M++ EN++ ++ LP ++ Sbjct: 67 GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDE 125 Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 IV + + L E + + LSGG +R+ +ARALAI P +L +DEP S LDPIA Sbjct: 126 IVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI----QKKGIMKEGTISDIVDS 241 + ++L+ LR L +++ +TH++ + A + G M E ++ + S Sbjct: 186 TMKVEELIHSLRSELTIAI--VTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243 Query: 242 N--DPWIRSYFN-RF 253 N D R Y + RF Sbjct: 244 NPLDSRTRDYVSGRF 258 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 91.3 bits (226), Expect = 2e-19 Identities = 61/212 (28%), Positives = 112/212 (52%), Gaps = 14/212 (6%) Query: 10 EEKILSVRNLTIELNNRI--ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 + +RN NR +L+++NLDI R ++ IG SG GKS +R + L + Sbjct: 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE 136 Query: 68 G-----EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122 G E+ LG + +K + ++G++FQ F M++ +N++ + + Sbjct: 137 GTSHEGEIYFLGTNTR-SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGIND 194 Query: 123 ADLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179 ++E IV + L E + + LSGG +R+ +ARA+A++P++L +DEPTS Sbjct: 195 RKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254 Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 LDPIA + ++L+++L+ S+ ++TH + Sbjct: 255 ALDPIATAKIEELILELKKK--YSIIIVTHSM 284 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 91.2 bits (227), Expect = 2e-19 Identities = 66/235 (28%), Positives = 130/235 (55%), Gaps = 11/235 (4%) Query: 11 EKILSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68 ++ V N++ N L N++ +I GE + ++G +G+GKS + + + GL+ SG Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG 64 Query: 69 EVKVLGEHLNLAKGKQNFAF-SAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLI 126 E+K+ G ++ K+N K+G++FQ+ F TV+++I+ + E+ +P + Sbjct: 65 EIKIDGITIS----KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL-ENKKVPPKKM 119 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 + I+ VG+ + + P LSGG +RV++A LA++P+++ DE TS LDP Sbjct: 120 KDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 E K+++ LR + ++ ITHD++ I ++V V + ++ +G +I+++ Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNN 232 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 91.2 bits (227), Expect = 2e-19 Identities = 65/220 (29%), Positives = 117/220 (53%), Gaps = 15/220 (6%) Query: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI- 59 + + N S E+ L VRNL + ++ L +I++ I + + IG SG GKS L+R Sbjct: 14 LDVLN-LSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFN 72 Query: 60 ----LGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPI 115 L R+ GE+++ G+++ K ++G++FQ F ++ EN+ + Sbjct: 73 RMNDLVDNCRIEGEIRLDGQNIY-DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGL 130 Query: 116 KEH-LNLPADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDL 171 + +N L E V + L E + + F LSGG +R+ +ARA+AI+P++ Sbjct: 131 RLQGINNRRVLDE-AVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEV 189 Query: 172 LFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 L LDEPTS LDPI+ + ++L+ +L+ ++ ++TH++ Sbjct: 190 LLLDEPTSALDPISTLKIEELITELKSK--YTIVIVTHNM 227 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 90.9 bits (226), Expect = 3e-19 Identities = 63/237 (26%), Positives = 121/237 (51%), Gaps = 19/237 (8%) Query: 8 SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 ++ + ++N+T + +++N+NL I +G ++ ++G SG GK+ ++R + GL Sbjct: 1 MTQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127 G++ + GE + +Q + ++FQ ALF M++ EN+ +K L +P + + Sbjct: 61 GQIFIDGEDVTHRSIQQR-----DICMVFQSYALFPHMSLGENVGYGLK-MLGVPKEERK 114 Query: 128 HIVHTKIAIVGLPPETANLMPF------QLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181 V + +V +L F Q+SGG +RV+LARAL + P +L DEP S L Sbjct: 115 QRVKEALELV-------DLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNL 167 Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 D + + +L+ ++ +THD + + + V V+ K IM+ G+ ++ Sbjct: 168 DANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 90.9 bits (226), Expect = 3e-19 Identities = 80/242 (33%), Positives = 114/242 (47%), Gaps = 37/242 (15%) Query: 11 EKILSVRNLTI--ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG 68 E LSV N+TI + L I+ + GE L +IG SG+GKS L R I+G+ P SG Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 V++ G L + + F +G L Q LF TV ENI+ AD + Sbjct: 374 SVRLDGADLK--QWDRET-FGKHIGYLPQDVELFPG-TVAENIA-----RFGENADPEKI 424 Query: 129 IVHTKIA-----IVGLP--------PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLD 175 I K+A I+ LP P A LSGG +R++LARAL DP L+ LD Sbjct: 425 IEAAKLAGVHELILRLPDGYDTVIGPGGAT-----LSGGQRQRIALARALYGDPKLVVLD 479 Query: 176 EPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235 EP S LD + + L+ G++V +ITH + L + K ++++G I Sbjct: 480 EPNSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLL-------GCVDKILVLQDGRI 531 Query: 236 SD 237 + Sbjct: 532 AR 533 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 91.0 bits (226), Expect = 3e-19 Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 12/209 (5%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI--LG-LIPRVS 67 E IL V +L++ N + LN+++LD EI +IG SG+GKS L+R I + L P V+ Sbjct: 3 EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62 Query: 68 --GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125 G + G ++ + ++G++FQ F M++ EN+ ++ + Sbjct: 63 ITGSIVYNGHNI-YSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQV 120 Query: 126 IEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 ++ V + + E + + LSGG +RV +AR LA P ++ LDEPTS LD Sbjct: 121 LDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 PI+A + ++ L+ L+ ++ ++T + Sbjct: 181 PISAGKIEETLLGLKDD--YTMLLVTRSM 207 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 90.5 bits (225), Expect = 4e-19 Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 8/229 (3%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 L NLT+ + ILN+++L + G+I +IG +G GKS L++ L+ SG V + Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI---EHI 129 + +++ +Q + +L +L QH +TV+E ++ L+L L Sbjct: 62 GDKPISMLSSRQ---LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR 118 Query: 130 VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 V+ + + A+ LSGG +R LA LA D ++ LDEPT+ LD E Sbjct: 119 VNQAMEQTRI-NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177 Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 +L+ +L G +V + HDLN C+ + V+ +M +GT ++ Sbjct: 178 MRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 90.4 bits (224), Expect = 5e-19 Identities = 64/202 (31%), Positives = 110/202 (54%), Gaps = 12/202 (5%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL----NLAKGKQ 84 L NINL I E+ +IG SG GKS ++ L L+ ++ VK+ GE N+ KGK Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIK-TLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 Query: 85 NFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143 + +G++FQ G F ++ +N++ + H ++ IV + V L E Sbjct: 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV 145 Query: 144 ANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200 + + Q LSGG +R+ +ARALA +PD+L +DEPTS LDP++ + ++L++KL+ Sbjct: 146 KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK- 204 Query: 201 GLSVYMITHDLNNLISTCNRVA 222 ++ ++TH++ ++ A Sbjct: 205 -YTIVIVTHNMQQAARVSDQTA 225 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 90.0 bits (224), Expect = 6e-19 Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 6/187 (3%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLI-PRVSGEVKVLGEHLNLAKGKQNFA 87 L+ ++ + RG+ L V+G SG GKS L R +L +I GE+ G+ L A + Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLAR-LLTMIETPTGGELYYQGQDLLKADPEAQKL 89 Query: 88 FSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 K+ ++FQ +G+L V + + P+ + +L A +A VGL PE + Sbjct: 90 LRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYD 149 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD-PIAAEEFDKLLIKLRHSLGLSV 204 P SGG +R+++ARAL +DPD++ DEP S LD + A+ + L++ L+ LGLS Sbjct: 150 RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN-LMMDLQQELGLSY 208 Query: 205 YMITHDL 211 I+HDL Sbjct: 209 VFISHDL 215 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 89.7 bits (222), Expect = 6e-19 Identities = 59/209 (28%), Positives = 112/209 (53%), Gaps = 10/209 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + V NL+ + + IL ++++I + ++ +IG SG GKS ++ L + + EV+V Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESEVRVE 66 Query: 74 GE----HLNLAKGKQNF-AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 G + N+ + + N ++ ++ LF M+V +N++ +K P I+ Sbjct: 67 GRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDD 125 Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 IV + + L E + + LSGG +R+ +ARALA+ P +L +DEP GLDPIA Sbjct: 126 IVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNL 214 + + + L+ LR L++ +++H+L+ + Sbjct: 186 SMKVESLIQSLRLRSELTMVIVSHNLHQV 214 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 89.3 bits (222), Expect = 9e-19 Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 7/225 (3%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L V L+ R L++++ + GE + ++G +G GKS L + L G++ V Sbjct: 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 G L A A A+LGV+FQ L ++V++N+ H L + Sbjct: 62 GHDLRRAPR----AALARLGVVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAAL 116 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 +A +GL E A+ +L+GG +RV +ARAL P LL LDEPT GLDP + + Sbjct: 117 LARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV 175 Query: 194 IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 L GLSV TH L + I +R+ V+ + ++ +G +++ Sbjct: 176 RALCRDQGLSVLWATH-LVDEIEADDRLVVLHRGRVLADGAAAEL 219 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 89.4 bits (222), Expect = 9e-19 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 18/223 (8%) Query: 32 INLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLN-LAKGKQNFAFSA 90 + + + + G SG+GK+ L+R I GL GE+ + G L KG Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 Query: 91 KLGVLFQHGALFSSMTVQENI------SMPIKEHLNLPADLIEHIVHTKIAIVGLPPETA 144 ++G +FQ LF ++V+ N+ + P E +IE ++G+ Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARP-SERRISFERVIE--------LLGIGHLLG 126 Query: 145 NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSV 204 L P +LSGG +RV++ RAL P LL +DEP + LD E L +L G+ + Sbjct: 127 RL-PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185 Query: 205 YMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV-DSNDPWI 246 ++H L ++ +RV V++ + G I+++ + PW+ Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 89.0 bits (221), Expect = 1e-18 Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 37/245 (15%) Query: 12 KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP----RVS 67 + + +RN+ ++ + +++ ++L + RG +L ++G SG+GKS+ LG++P + + Sbjct: 3 QQIELRNIALQ-AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61 Query: 68 GEVKVLGEHLNLA--KGK------QN--FAFSAKLGVLFQHGALFSSMTVQENISMPIKE 117 G V + G+ + +G+ QN AF+ L + H T Sbjct: 62 GRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP-LHTMHTHA----RETCLA-------- 108 Query: 118 HLNLPAD--LIEHIVHTKIAIVGL--PPETANLMPFQLSGGMIKRVSLARALAIDPDLLF 173 L PAD + + VGL L PF++SGGM++R+ +A AL + + Sbjct: 109 -LGKPADDATLTAALEA----VGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII 163 Query: 174 LDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 DEPT+ LD +A LL + L + ++THD+ + + VAV+ I+++G Sbjct: 164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223 Query: 234 TISDI 238 + + Sbjct: 224 DVETL 228 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 88.9 bits (220), Expect = 1e-18 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 10/234 (4%) Query: 12 KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIPRVSG 68 + V NL ++ IL N+NLDI + + +IG SG GKS +R + LIP Sbjct: 2 YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61 Query: 69 EVKVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127 E + + +++ + K+G++FQ F ++ +N++ ++ H D IE Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIE 120 Query: 128 HIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 V + L E + + LSGG +R+ +AR +A+ P+++ +DEP S LDPI Sbjct: 121 ERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPI 180 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 + + + L+ KL+ ++ ++TH++ + I++ G I Sbjct: 181 STTKIEDLIHKLKED--YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 88.5 bits (219), Expect = 2e-18 Identities = 58/206 (28%), Positives = 110/206 (53%), Gaps = 12/206 (5%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIP--RVSG 68 + +NL + + LN+INL I +I +IG SG GKS +R + LI ++ G Sbjct: 5 MESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEG 64 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 EV + G+++ K ++G++FQ F M++ +N++ + H ++ Sbjct: 65 EVLLDGKNI-YDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDK 122 Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 IV + L E + + +LSGG +R+ +AR +A+ PD++ +DEPTS LDPI+ Sbjct: 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIS 182 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211 + + L+++L+ ++ ++TH++ Sbjct: 183 TLKIEDLMVELKKE--YTIVIVTHNM 206 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 88.6 bits (220), Expect = 2e-18 Identities = 61/219 (27%), Positives = 120/219 (54%), Gaps = 8/219 (3%) Query: 22 ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK 81 E ++ L+++NL++ +GE L ++G +G+GKS + + + L+ G+V V + L+ + Sbjct: 19 ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV--DGLDTSD 76 Query: 82 GKQNFAFSAKLGVLFQH--GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGL 139 + + K G++FQ+ + +++ V+E+++ E+L +P + I V + VG+ Sbjct: 77 EENLWDIRNKAGMVFQNPDNQIVATI-VEEDVAFG-PENLGIPPEEIRERVDESLKKVGM 134 Query: 140 PPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHS 199 E P LSGG +RV++A LA+ P+ + DEPT+ LDP E + +L Sbjct: 135 Y-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK 193 Query: 200 LGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 G+++ +ITH + + +R+ V+ ++ EGT +I Sbjct: 194 YGITIILITHYMEEAVEA-DRIIVMDSGKVVMEGTPKEI 231 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 87.9 bits (218), Expect = 2e-18 Identities = 69/215 (32%), Positives = 117/215 (54%), Gaps = 10/215 (4%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILG-LIPRVSGEVK--VLGEHLNLAKGKQ 84 LN+I+ I RG +IG +G+GKS + + I G L+P + K V G L K Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT---AKT 78 Query: 85 NFAFSAKLGVLFQH-GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143 + K+G++FQ+ F TV ++++ + E+ +P + IV +A VG+ + Sbjct: 79 VWDIREKVGIVFQNPDNQFVGATVGDDVAFGL-ENRAVPRPEMIKIVRDVLADVGML-DY 136 Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203 + P LSGG +RV++A LA++P ++ LDE TS LDP E+ KL+ KL+ L+ Sbjct: 137 IDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT 196 Query: 204 VYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 V ITHD++ + ++V V+ ++ +G+ +I Sbjct: 197 VISITHDIDE-ANMADQVLVLDDGKLLAQGSPVEI 230 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 88.0 bits (218), Expect = 2e-18 Identities = 63/210 (30%), Positives = 110/210 (52%), Gaps = 12/210 (5%) Query: 10 EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIP-- 64 E ILS +NL + + L +I + I + + +IG SG GKS L+R + LIP Sbjct: 3 MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGC 62 Query: 65 RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124 R++G++ GE++ G A K+G++FQ F ++ EN++ + H Sbjct: 63 RITGDILYNGENIM-DSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKK 120 Query: 125 LIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181 ++ IV + L E + + LSGG +R+ +AR LA++P+++ +DEP S L Sbjct: 121 TLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSAL 180 Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 DPIA + + L+ L+ +V ++TH++ Sbjct: 181 DPIATAKIEDLIEDLKKE--YTVIIVTHNM 208 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 87.9 bits (218), Expect = 3e-18 Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 13/221 (5%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP---RVSGEVKVLGEHLNL----AK 81 ++ I+ + +GE++G++G SG+GKS+ I+GLI RV E K+ +L K Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE-KLEFNGQDLQRISEK 81 Query: 82 GKQNFAFSAKLGVLFQHG--ALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGL 139 ++N A++ ++FQ +L TV I IK H + VG+ Sbjct: 82 ERRNLV-GAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGI 140 Query: 140 PPETANL--MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197 P + L P QLSGGM +RV +A A+A P LL DEPT+ LD + +LL++L+ Sbjct: 141 PDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQ 200 Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 +++ +ITHDL + +++ V+ +++ G DI Sbjct: 201 QKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 87.1 bits (216), Expect = 3e-18 Identities = 61/248 (24%), Positives = 119/248 (47%), Gaps = 30/248 (12%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 E + VRN+T ++ +I+ + RGEILG G G+G++ LM + G+ R GE+ Sbjct: 263 ETVFEVRNVTSRDRKKV--RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENISMPIKEHLNLPA-- 123 ++ G+ ++ + K G+ + + F + ++ +N++ I L Sbjct: 321 RLNGKDISPRSPLD----AVKKGMAYITESRRDNGFFPNFSIAQNMA--ISRSLKDGGYK 374 Query: 124 ---DLIEHIVHTKIA-----IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLD 175 L + + A ++ L + N +LSGG ++V +++ L P+++ D Sbjct: 375 GAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434 Query: 176 EPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235 EPT G+D A E K++ +L G + M++ +L +I+ C+R+AV EG + Sbjct: 435 EPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAV------FCEGRL 487 Query: 236 SDIVDSND 243 + I+ + D Sbjct: 488 TQILTNRD 495 Score = 78.3 bits (193), Expect = 2e-15 Identities = 61/247 (24%), Positives = 113/247 (45%), Gaps = 20/247 (8%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 +S+ + L ++NL + GEI ++G +G GKS LM+ + G+ G + Sbjct: 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62 Query: 71 KVLGEHLNLAKGKQNFAFSAKLG--VLFQHGALFSSMTVQENI---SMPIKEHLNLP-AD 124 + + N K + +A+LG +++Q ++ +TV EN+ K+ + D Sbjct: 63 TINNINYN----KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIID 118 Query: 125 LIEHIVHTKIA--IVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 E V + VGL + + LS + + +A+ L +D ++ +DEPTS L Sbjct: 119 WREMRVRAAMMLLRVGLKVDLDEKVA-NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL- 176 Query: 183 PIAAEEFDKLLIKLRH--SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 +E D L + + G ++ I+H L + C+R V++ + G +SD+ Sbjct: 177 --TNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV-- 232 Query: 241 SNDPWIR 247 SND +R Sbjct: 233 SNDDIVR 239 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 86.7 bits (215), Expect = 5e-18 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 23/200 (11%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 ++S+ N+++ R +L++++L++ G+IL ++G +G GKS L+R +LGL+ G +K Sbjct: 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK- 62 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 L + Q L + T +E+I +P + + LI+ Sbjct: 63 RNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDI-LPALKRVQ-AGHLIDA---- 116 Query: 133 KIAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 P Q LSGG +RV LARAL P LL LDEPT G+D Sbjct: 117 ---------------PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161 Query: 192 LLIKLRHSLGLSVYMITHDL 211 L+ +LR L +V M++HDL Sbjct: 162 LIDQLRRELDCAVLMVSHDL 181 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 86.8 bits (215), Expect = 5e-18 Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 14/221 (6%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI-----LGLIPR 65 E ++ R+L + + L+++++DI ++ +IG SG GKS +R I L R Sbjct: 37 ETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96 Query: 66 VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125 V GE+ G+++ A A ++G++FQ F ++ +N++ +K D Sbjct: 97 VEGELTFRGKNVYDAD-VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ-GYDGD- 152 Query: 126 IEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 I+ V + L E + + LSGG +R+ +ARA+A DP+++ +DEP S LD Sbjct: 153 IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAV 223 P+A + + L+ +L +V ++TH++ ++ AV Sbjct: 213 PVATSKIEDLIEELAEE--YTVVIVTHNMQQAARISDKTAV 251 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 86.6 bits (214), Expect = 5e-18 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 9/220 (4%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L NINL I +GE +G+IG +G+GKS L + GL+ G+V V G ++ + Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG--IDTGDFSKLQGI 75 Query: 89 SAKLGVLFQHGAL-FSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147 +G++FQ+ F TV+E+++ E+L LP I V +A +GL + + Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPPIEIRKRVDRALAEIGL-EKYRHRS 133 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 P LSGG + V+LA L ++P+ L DE TS LDP + + + KL H G ++ I Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYI 192 Query: 208 THDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247 TH+L L +R+ V+ + I+ EG +++ +D ++ Sbjct: 193 THNLEEL-HDADRIIVMDRGKIVLEGEPENVL--SDVSLQ 229 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 85.6 bits (212), Expect = 1e-17 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 12/231 (5%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L + ++ R+I++ +++ G + G++G +G+GKS L+R + G + +G V + Sbjct: 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-----PADLIEH 128 G L G A + ++ ++ Q +TV++ +++ H +L P D Sbjct: 62 GVDL---HGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHD--AA 116 Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188 +V +A L M LSGG +RV +ARALA +P LL LDEPT+ LD A E Sbjct: 117 VVDRALARTELSHLADRDMS-TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLE 175 Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 L+ +L + G++V HDLN S C+ V V+ ++ G +++ Sbjct: 176 TLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 85.4 bits (211), Expect = 1e-17 Identities = 59/208 (28%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LGLIP--RVS 67 +LS +++ I ++ + N+NLD+ RG + +IG SG GK+ +R I L P RV+ Sbjct: 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127 G + + G+ + A ++G++FQ F +M+V +N+ +K D + Sbjct: 64 GRILLDGQDI-YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLM 122 Query: 128 HIVHTKIAIVGLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 + + L E + + LSGG +R+ +ARALA++P++L +DEPTS LDP Sbjct: 123 EVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLN 212 + + L+ L+ ++ ++TH+++ Sbjct: 183 STARIEDLMTDLKKV--TTIIIVTHNMH 208 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 85.5 bits (211), Expect = 1e-17 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 18/226 (7%) Query: 7 PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRG-------I 59 S+ ++ + I N + + + ++ I + EI G IG SG GKS ++R + Sbjct: 2 VSEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLV 61 Query: 60 LGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHL 119 G R G V LG+ + KG +G++FQ FS M++ +N++ ++ L Sbjct: 62 KGF--RFEGHVHFLGQDV-YGKGVDPVVVRRYIGMVFQQPNPFS-MSIFDNVAFGLR--L 115 Query: 120 N-LPADLIEHIVHT--KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176 N DL + + H A+ + + LSGG +R+ +ARA+A +P++L LDE Sbjct: 116 NRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE 175 Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVA 222 P S LDPIA ++L+++L+ ++ ++TH++ I + A Sbjct: 176 PCSALDPIATRRVEELMVELKKD--YTIALVTHNMQQAIRVADTTA 219 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 85.2 bits (211), Expect = 2e-17 Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%) Query: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60 MQ + + ++RN++ + R +L+ ++L G++ G+IG +G+GKS L++ +L Sbjct: 1 MQ--EYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-ML 57 Query: 61 GL-IPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM---PIK 116 G P GE+ + + L K AF+ K+ L Q MTV+E +++ P Sbjct: 58 GRHQPPSEGEILLDAQPLESWSSK---AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH 114 Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176 L V I++VGL P A+ + LSGG +R +A +A D L LDE Sbjct: 115 GALGRFGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDE 173 Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236 PTS LD + L+ +L GL+V + HD+N C+ + ++ ++ +GT + Sbjct: 174 PTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233 Query: 237 DIVDS 241 +++ Sbjct: 234 ELMRG 238 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 84.6 bits (209), Expect = 2e-17 Identities = 59/210 (28%), Positives = 111/210 (52%), Gaps = 12/210 (5%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIP--R 65 +KI++ ++ + L I+LD + EI +IG SG GKS +R + LIP Sbjct: 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62 Query: 66 VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125 ++G V + G+++ A + ++G++FQ F ++ EN+ ++ + Sbjct: 63 ITGNVSLRGQNI-YAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAV 120 Query: 126 IEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 ++ V T + + E + + LSGG +RV +AR LA+ PD++ LDEPTS LD Sbjct: 121 LDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212 PI++ + + +L++LR ++ ++TH ++ Sbjct: 181 PISSTQIENMLLELRDQ--YTIILVTHSMH 208 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 84.3 bits (208), Expect = 3e-17 Identities = 56/202 (27%), Positives = 104/202 (51%), Gaps = 12/202 (5%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIP--RVSGEVKVLGEHLNLAKGK 83 L I+++I ++ IG SG GKS +R + LIP R+ GE+++ G ++ KG Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI-YDKGV 77 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143 Q +G++FQ F ++ EN++ ++ + I V + L E Sbjct: 78 QVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV 136 Query: 144 ANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200 + + F LSGG +R+ +ARA+A+ P +L +DEP S LDPI+ + ++L+ +L+ Sbjct: 137 KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD- 195 Query: 201 GLSVYMITHDLNNLISTCNRVA 222 ++ ++TH++ ++ A Sbjct: 196 -YTIVIVTHNMQQAARVSDKTA 216 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 83.6 bits (207), Expect = 4e-17 Identities = 68/217 (31%), Positives = 119/217 (54%), Gaps = 11/217 (5%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L ++L I G ++G +G GKS L+ + G+ G VKV+G +N K Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKW---V 77 Query: 89 SAKLGVLFQH--GALFSSMTVQENISM-PIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 +K+G++FQ +FSS TV ++++ P+ ++ L D +E V + V + + + Sbjct: 78 RSKVGLVFQDPDDQVFSS-TVWDDVAFGPV--NMGLDKDEVERRVEEALKAVRMW-DFRD 133 Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205 P+ LS G KRV++A LA+DPD++ LDEP + LDP E ++L +L H+ G +V Sbjct: 134 KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVI 192 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 + THD++ ++V V+++ ++ EG S + D + Sbjct: 193 VATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 83.5 bits (207), Expect = 5e-17 Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 15/183 (8%) Query: 33 NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-HLNLAKGKQNFAFSAK 91 +L + RGE + ++G SG GKS L+ I G + SG + + G+ H ++ Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRR------P 72 Query: 92 LGVLFQHGALFSSMTVQENISMPIKEHLNLPAD---LIEHIVHTKIAIVGLPPETANLMP 148 + +LFQ LFS +TV +NI + + L L A + I +G+ A L P Sbjct: 73 VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQ----MGIEDLLARL-P 127 Query: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208 QLSGG +RV+LAR L + +L LDEP S LDP +E L+ ++ L++ M++ Sbjct: 128 GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS 187 Query: 209 HDL 211 H L Sbjct: 188 HSL 190 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 83.0 bits (205), Expect = 8e-17 Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 19/221 (8%) Query: 6 IPSQEEKI-------LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRG 58 +P + +K+ + +N +I + +N DIL + +IG SG GKS +R Sbjct: 25 LPPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRA 84 Query: 59 IL---GLIP--RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM 113 I LIP +G + GE + K K+G++FQ F ++ +NI+ Sbjct: 85 INRMNDLIPSCHTTGALMFDGEDI-YGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAY 142 Query: 114 PIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPD 170 + H +E IV + L E ++ + LSGG +R+ +AR LA++P+ Sbjct: 143 GPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPE 202 Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 +L LDEPTS LDP A + + L+ +LR S ++ ++TH++ Sbjct: 203 ILLLDEPTSALDPKATAKIEDLIQELRGS--YTIMIVTHNM 241 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 82.8 bits (205), Expect = 8e-17 Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 32/198 (16%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR-VSGEVKVLGEHLN------LA 80 +L I+LDI GE++ ++G+SG+GKS LM ILG + + SG +V G+ + LA Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLM-NILGCLDKPTSGTYRVAGQDVATLDADALA 81 Query: 81 K-GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPI-------KEHLNLPADLIEHIVHT 132 + +++F F +FQ L S +T +N+ +P K+ L +L++ + Sbjct: 82 QLRREHFGF------IFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRL--- 132 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 GL + P QLSGG +RVS+ARAL ++ DEPT LD + EE + Sbjct: 133 -----GLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186 Query: 193 LIKLRHSLGLSVYMITHD 210 L +LR G +V ++THD Sbjct: 187 LHQLRDR-GHTVIIVTHD 203 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 82.6 bits (204), Expect = 9e-17 Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 16/243 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 + V +L++E + +L+ ++L + G ++G++G +G GK+ L+R I G + +G V V Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-----PADLIEH 128 G+ + + A S ++ + Q +L V++ + M H + D Sbjct: 64 GDDVEALSAR---AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD--RA 118 Query: 129 IVHTKIAIVGLPPETANLMPF-QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 V + G+ P LSGG +RV LARALA +L LDEPT+ LD Sbjct: 119 AVERAMERTGVAQFADR--PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247 +L+ +L G + HDL+ C+ + ++ + G +D++ + +R Sbjct: 177 RTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA--DTLR 233 Query: 248 SYF 250 + F Sbjct: 234 AAF 236 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 82.2 bits (203), Expect = 1e-16 Identities = 59/217 (27%), Positives = 113/217 (52%), Gaps = 10/217 (4%) Query: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60 N + I+S++N+TI + N+ DI RG++ +IG SG GKS ++R + Sbjct: 1 SIKTNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN 60 Query: 61 ---GLIPRVSGEVKVLGEHLNL-AKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--P 114 LI S + +VL + +L ++G++FQ F ++ ENI+ Sbjct: 61 RMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGAR 119 Query: 115 IKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174 I + +L+E + K A+ + N + LSGG +R+ +AR +AI+P+++ + Sbjct: 120 INGYTGDMDELVERSL-RKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILM 178 Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 DEP S LDPI+ + ++ + +L+ + ++ ++TH++ Sbjct: 179 DEPCSALDPISTLKIEETMHELKKN--FTIVIVTHNM 213 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 82.0 bits (203), Expect = 1e-16 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 37/211 (17%) Query: 19 LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR---VSGEVKVLGE 75 E + +L N++ GE+L V+GSSG GK+ LM + P+ SG V + G Sbjct: 31 FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90 Query: 76 HLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL--------IE 127 ++ + + A+ + Q ++TV+E+ + + HL +P + ++ Sbjct: 91 PIDAKEMRAISAY------VQQDDLFIPTLTVREH--LMFQAHLRMPRRVTKKEKRERVD 142 Query: 128 HIV---------HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 ++ +T+I + G LSGG KR++ A L DP LLF DEPT Sbjct: 143 EVLQALGLRKCANTRIGVPGRVK--------GLSGGERKRLAFASELLTDPPLLFCDEPT 194 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 SGLD A ++L L G ++ H Sbjct: 195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIH 224 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 82.0 bits (202), Expect = 1e-16 Identities = 50/206 (24%), Positives = 109/206 (52%), Gaps = 11/206 (5%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI---LGLIP--RVSG 68 + + L + + ++++D + +IG SG GKS ++R I L+P RV+G Sbjct: 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG 64 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 ++ + + +G + ++G++FQ F +M++ +N+ K + + + Sbjct: 65 KILLDDTDI-YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE 123 Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 IV + + V L E + + +LSGG +R+ +AR +A+ P+++ +DEP S LDPI+ Sbjct: 124 IVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS 183 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211 + ++L+ +L+ ++ ++TH++ Sbjct: 184 TLKIEELIEELKEK--YTIIIVTHNM 207 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 81.8 bits (202), Expect = 2e-16 Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 15/218 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 ++ NL + L +INL I ++ +IG SG GKS L+R + + + G VK+ Sbjct: 4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEG-VKIT 62 Query: 74 GEHLNLAKGKQNFA------FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE 127 G+ L + G+ + K+G++FQ F M++ EN++ ++ +++ Sbjct: 63 GK-LTM-DGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLD 119 Query: 128 HIVHTKIAIVGLPPETA---NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 +V + L E F LSGG +R+ +AR +A++PD++ +DEPTS LDPI Sbjct: 120 EVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPI 179 Query: 185 AAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVA 222 A + ++L+ +L+ + ++ ++TH + +R A Sbjct: 180 ATHKIEELMEELKKN--YTIVIVTHSMQQARRISDRTA 215 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 81.5 bits (202), Expect = 2e-16 Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 21/200 (10%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L +L R++ + ++ + GE L + G +G+GK+ L+R I GL+P +G +K+ Sbjct: 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLD 62 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI---EHIV 130 G ++ LG A+ ++TV EN+ A + E + Sbjct: 63 GGDIDDPD---VAEACHYLG---HRNAMKPALTVAENLE--------FWAAFLGGEELDI 108 Query: 131 HTKIAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 + VGL P A+L PF LS G +RV+LAR L + + LDEPT+ LD AA Sbjct: 109 AAALEAVGLAP-LAHL-PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD-AAAVAL 165 Query: 190 DKLLIKLRHSLGLSVYMITH 209 LI+ + G V TH Sbjct: 166 FAELIRAHLAQGGIVIAATH 185 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 81.3 bits (201), Expect = 2e-16 Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 15/191 (7%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGL-----IPRVSGEVKVLGEHLNLAKGK 83 L +++LDI + IG SG GKS +R + + RV+G++ + GE + Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY-DPRL 93 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEH--LNLPADLIEHIVHTKIAIVGLPP 141 A++G++FQ F ++ EN++ + H A+L + IV T + GL Sbjct: 94 DVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAEL-DEIVETSLRKAGLWE 151 Query: 142 ETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198 E + + LSGG +R+ +ARA+A+ P+++ +DEP S LDPIA + ++L+ +LR Sbjct: 152 EVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ 211 Query: 199 SLGLSVYMITH 209 + ++ ++TH Sbjct: 212 N--YTIVIVTH 220 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 81.0 bits (200), Expect = 3e-16 Identities = 65/217 (29%), Positives = 119/217 (54%), Gaps = 9/217 (4%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L +++ +I +G+ ++G +G+GKS + + ++G+ SGE+ + N A NF Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF----YNNQAITDDNFEK 80 Query: 89 SAK-LGVLFQHGA-LFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL 146 K +G++FQ+ F V+ +++ ++ H +P D + V + V + E A+ Sbjct: 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA-VPYDEMHRRVSEALKQVDML-ERADY 138 Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206 P LSGG +RV++A LA++P ++ LDE TS LDP A + L+ K++ +++ Sbjct: 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS 198 Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 ITHDL+ + + V V+ K + KEGT ++I D + Sbjct: 199 ITHDLSEAMEA-DHVIVMNKGTVYKEGTPTEIFDHAE 234 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 80.9 bits (200), Expect = 3e-16 Identities = 55/214 (25%), Positives = 115/214 (53%), Gaps = 14/214 (6%) Query: 7 PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---- 62 +EE LS ++L + + + I++ + +I +IG SG+GKS +R + + Sbjct: 14 FPEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTI 73 Query: 63 -IPRVSGEVKVLGEHLNLAKGKQN-FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120 I RV+G ++L +++ + + N + +G++FQ F+ ++ ENI+ ++ Sbjct: 74 DIARVTG--QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGV 130 Query: 121 LPADLIEHIVHTKIAIVGLPPETA---NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177 +++ IV T + L + + LSGG +R+ +ARA+A+ PD+L +DEP Sbjct: 131 KDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190 Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 S LDPI+ + ++ + +L+ + ++ ++TH++ Sbjct: 191 ASALDPISTMQLEETMFELKKN--YTIIIVTHNM 222 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 80.5 bits (199), Expect = 4e-16 Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 15/200 (7%) Query: 15 SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74 ++RN+T + +I +INLDI GE + +G SG GKS L+R I GL SG++ + Sbjct: 5 TLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE 64 Query: 75 EHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 + +N + ++ +G++FQ AL+ ++V EN+S +K + I V+ Sbjct: 65 KRMNDVPPAERG------VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE-INQRVNQV 117 Query: 134 IAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190 ++ L A+L+ P LSGG +RV++ R L +P + LDEP S LD + Sbjct: 118 AEVLQL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173 Query: 191 KLLIKLRHSLGLSVYMITHD 210 + +L LG ++ +THD Sbjct: 174 IEISRLHKRLGRTMIYVTHD 193 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 80.3 bits (198), Expect = 4e-16 Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 24/242 (9%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL-----IPR 65 + LSV +L + + L +++DI + +IG SG GKS +R + + R Sbjct: 43 DAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAAR 102 Query: 66 VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125 + G V++ G+ + G ++G++FQ F +++ENIS ++H ++ L Sbjct: 103 IDGSVELDGQDI-YQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGL 160 Query: 126 I------------EHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPD 170 + + +V + L E + + LSGG +R+ +AR LA+DP+ Sbjct: 161 LARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPE 220 Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIM 230 ++ +DEP S LDPIA + + L+ +L + +V ++TH++ ++ AV G + Sbjct: 221 VILMDEPASALDPIATSKIEDLIEEL--AEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 Query: 231 KE 232 E Sbjct: 279 VE 280 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 80.3 bits (198), Expect = 5e-16 Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 4/211 (1%) Query: 23 LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKG 82 L R L + + GE+ + G SG GKS L++ I G+ +G++ G + K Sbjct: 12 LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKN 71 Query: 83 KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142 ++ ++G++FQ L TV +N+++P+ D I V + VGL + Sbjct: 72 REVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLDK 130 Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL 202 N P QLSGG +RV +ARA+ P +L DEPT LD +E +L + + +G+ Sbjct: 131 AKNF-PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGV 188 Query: 203 SVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 +V M THD+ LIS + + G + G Sbjct: 189 TVLMATHDI-GLISRRSYRMLTLSDGHLHGG 218 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 80.1 bits (197), Expect = 5e-16 Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 30/231 (12%) Query: 16 VRNLT--IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 V+NL E + R ++ +N+ +I +G +G GK+ + + GL+P SG V V Sbjct: 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG 990 Query: 74 GEHL--NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK--------EHLNLPA 123 G+ + NL +Q+ LG+ QH LF +TV E+I + L + A Sbjct: 991 GKDIETNLDAVRQS------LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEA 1044 Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 L + +H K N LSGGM +++S+A A D ++ LDEPTSG+DP Sbjct: 1045 MLEDTGLHHK----------RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 + LL+K R G ++ M TH ++ +R+A+I + + GT Sbjct: 1095 YSRRSIWDLLLKYRS--GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143 Score = 68.1 bits (166), Expect = 2e-12 Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 11/199 (5%) Query: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL--NLAKGKQNFAFSAKLGVLF 96 GE G++G +G GK+ + + G SG+ V G+ + N++ QN +G Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN------MGYCP 2018 Query: 97 QHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMI 156 Q A+ +T +E++ + + +PA+ IE + + I +GL A+ + SGG Sbjct: 2019 QFDAIDDLLTGREHLYLYARLR-GVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNK 2076 Query: 157 KRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLIS 216 +++S A AL P L+ LDEPT+G+DP A ++ + G +V + +H + + Sbjct: 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEA 2135 Query: 217 TCNRVAVIQKKGIMKEGTI 235 C R+A++ K GTI Sbjct: 2136 LCTRLAIMVKGAFQCLGTI 2154 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 79.2 bits (195), Expect = 9e-16 Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 26/240 (10%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI-----PRVSG 68 + +R+L + +L+ +NL+I I ++G SG+GKS L+R LI RVSG Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63 Query: 69 EVKVLGEHLNLAKGKQNFAFSA-----KLGVLFQHGALFSSMTVQENISMPIKEH--LNL 121 EV G+ F ++ ++FQ ++++ EN+++ +K + + Sbjct: 64 EV--------YLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKS 115 Query: 122 PADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 +L E V + L E + + +LSGG +R+ +ARALA P++L DEPT Sbjct: 116 KKELQER-VRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 + LDP + + L ++L+ +++ ++TH + VA + K I++ G ++ Sbjct: 175 ANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 79.4 bits (196), Expect = 9e-16 Identities = 56/206 (27%), Positives = 109/206 (52%), Gaps = 12/206 (5%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL---GLIP--RVSG 68 + R L+ + L++I+L+ + ++ +IG SG GKS +R + LIP RV G Sbjct: 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG 66 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 E+ + GE++ ++G++FQ F ++ EN++ ++ + + Sbjct: 67 EILLDGENIY-DPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAE 124 Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 V + L E + + LSGG +R+ +ARALA++P++L +DEP S LDPIA Sbjct: 125 RVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIA 184 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211 ++ ++L+ +L+ ++ ++TH++ Sbjct: 185 TQKIEELIHELKAR--YTIIIVTHNM 208 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 78.7 bits (194), Expect = 1e-15 Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 14/212 (6%) Query: 8 SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIP 64 + E +L NL + + + + N+ LDI + +I IG SG GKS ++R + LIP Sbjct: 5 NGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIP 64 Query: 65 --RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLP 122 RV G+V G++L A ++G++FQ F ++ +NI+ + Sbjct: 65 GFRVEGKVTFHGKNLY-APDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARI-NGYK 121 Query: 123 ADLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTS 179 D+ E +V + L E + + LSGG +R+ +ARA+A+ P+++ +DEP S Sbjct: 122 GDMDE-LVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180 Query: 180 GLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 LDPI+ ++L+ +L+ ++ ++TH++ Sbjct: 181 ALDPISTLRIEELMHELKEQ--YTIIIVTHNM 210 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 78.9 bits (194), Expect = 1e-15 Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 13/206 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGI-----LGLIPRVSG 68 + V NL + + L N+++ I + + +IG SG GKS +R + L R+ G Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH 128 +V + GE + +G++FQ F M++ +N++ + H DL + Sbjct: 73 KVSIEGEDI-YEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDL-DG 129 Query: 129 IVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 +V + L ET++ + LSGG +R+ +AR LA+ P ++ DEPTS LDPI+ Sbjct: 130 VVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDL 211 + L++ L+ ++ ++TH++ Sbjct: 190 TARIEDLIMNLKKD--YTIVIVTHNM 213 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 78.1 bits (192), Expect = 2e-15 Identities = 56/209 (26%), Positives = 107/209 (51%), Gaps = 12/209 (5%) Query: 10 EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLIPRV 66 + + V + + + L +++L I +I+ IG SG GKS L+R + LIP Sbjct: 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA 76 Query: 67 SGEVKVLGEHLNLAKGKQN-FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL 125 E ++L N+ + N ++G++FQ F ++ ENI+ + N Sbjct: 77 KVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRA--NGYKGN 133 Query: 126 IEHIVHTKIAIVGLPPETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 ++ +V + + E + + + LSGG +R+ +ARA+A+ PD+L +DEP S LD Sbjct: 134 LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 PI+ + ++L ++L+ ++ M+TH++ Sbjct: 194 PISTRQVEELCLELKEQ--YTIIMVTHNM 220 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 78.0 bits (193), Expect = 2e-15 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 35/229 (15%) Query: 32 INLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAK 91 I+ + GEI+G+ G G G+S LM+ + G R +G+V + G+ +++ + A A Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRD--AIRA- 328 Query: 92 LGVLF------QHGALFSSMTVQENISMPIKEHLNLPADLI-----------EHIVHTKI 134 G++ G + +V +NI++ + H +L A + I I Sbjct: 329 -GIMLCPEDRKAEG-IIPVHSVADNINISARRH-HLRAGCLINNRWEAENADRFIRSLNI 385 Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 P L+ LSGG ++ L R L+ D ++ LDEPT G+D A E ++ Sbjct: 386 KT----PSREQLIMN-LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440 Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 +L G++V ++ DL ++ +R+ V M+EG I+ + Sbjct: 441 ELAAQ-GVAVLFVSSDLPEVLGVADRIVV------MREGRIAGELAREQ 482 Score = 52.2 bits (126), Expect = 1e-07 Identities = 52/203 (25%), Positives = 102/203 (50%), Gaps = 18/203 (8%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L++I+ D G++ ++G +G GKS L++ + G +G + + G+ + A A Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTA--AL 77 Query: 89 SAKLGVLFQHGALFSSMTVQENI---SMPIKEHLNLPADLIEHIVHTKIAIVG--LPPET 143 +A + +++Q L MTV EN+ +P K + L ++ +G + P+T Sbjct: 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE-AREQLEHLGVDIDPDT 136 Query: 144 ANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL--LIKLRHSL 200 P + LS G + V +A+ALA + ++ DEPTS L +A E ++L +I+ + Sbjct: 137 ----PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL---SAREIEQLFRVIRELRAE 189 Query: 201 GLSVYMITHDLNNLISTCNRVAV 223 G + ++H + + + C+ + V Sbjct: 190 GRVILYVSHRMEEIFALCDAITV 212 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 78.1 bits (192), Expect = 2e-15 Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 14/214 (6%) Query: 7 PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR---GILGLI 63 P+Q++ V L L NIN+ + ++ +IG SG GKS +R + L Sbjct: 12 PTQQKSE--VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69 Query: 64 P--RVSGEVKVLGEHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120 P GE+ + +++N L+ ++ ++FQ F ++ EN++ ++ Sbjct: 70 PGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV 128 Query: 121 LPADLIEHIVHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEP 177 ++E V + L E + + F LSGG +R+ +ARALA DP++L DEP Sbjct: 129 KRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188 Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 TS LDPIA ++L+ L++ +++ ++TH++ Sbjct: 189 TSALDPIATASIEELISDLKNK--VTILIVTHNM 220 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 77.7 bits (192), Expect = 3e-15 Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 47/227 (20%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQ 84 IL++++L I GE + ++G SG+GKS L+R +LG SG V G L++ Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQ---- 523 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENI----SMPIKE------HLNLPADLIEHI---VH 131 A +LGV+ Q+G L S ++ ENI + + E L D I + +H Sbjct: 524 --AVRRQLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAED-IRAMPMGMH 579 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD----PIAAE 187 T I+ E LSGG +R+ +ARAL P +L DE TS LD I +E Sbjct: 580 TVIS------EGGG----TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE 629 Query: 188 EFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 ++ L ++ +I H L+ I +R+ V+ ++++GT Sbjct: 630 SLER--------LKVTRIVIAHRLST-IRNADRIYVLDAGRVVQQGT 667 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 77.3 bits (191), Expect = 3e-15 Identities = 62/232 (26%), Positives = 116/232 (50%), Gaps = 24/232 (10%) Query: 11 EKILSVRNLT---IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP-RV 66 E IL VRNLT + +++++ + RGEILG+ G G G++ L++ + G P R Sbjct: 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW 316 Query: 67 SGEVKVLGEHLNLAKGKQNFAFSAKLGVLF------QHGALFSSMTVQENISMPI----- 115 GE+ + G+ + + +N + G+ + G + M V +NI++ Sbjct: 317 EGEIFIDGKPVKI----RNPQQAIAQGIAMVPEDRKRDG-IVPVMGVGKNITLAALDRFT 371 Query: 116 -KEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFL 174 ++ A+L + I + + + L +LSGG ++ LA+ L ++P +L L Sbjct: 372 GGSRIDDAAEL--KTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILIL 429 Query: 175 DEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 DEPT G+D A E KL+ +L G+++ +I+ +L ++ +RV V+ + Sbjct: 430 DEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHE 480 Score = 63.8 bits (156), Expect = 4e-11 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 16/222 (7%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--VSG 68 E +L ++N+T L+N++L + GEI+ + G +G GKS LM+ + G+ P G Sbjct: 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEG 62 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENISM--PIKEHLNLPAD 124 E+ GE L N + + G+ + Q AL ++V ENI + I + D Sbjct: 63 EIIFEGEELQA----SNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD 118 Query: 125 LIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 + +A + L L G + V +A+AL LL LDEPT+ L Sbjct: 119 AMYLRAQKLLAQLKLDIN-PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL--- 174 Query: 185 AAEEFDKLL--IKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224 E LL I+ + G++ I+H LN + + + + VI Sbjct: 175 TESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI 216 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 77.0 bits (190), Expect = 4e-15 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 14/182 (7%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L+ RNL R++ ++ + GE L V G +G GK+ L+R + GL+ SGEV+ Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60 Query: 74 GEHLNLAKG--KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 G L + +N + L L ++ EN+ ++ A + Sbjct: 61 GTALAEQRDEPHRNILYLGHL------PGLKPELSALENLHF--WAAIHGGAQR---TIE 109 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191 +A VGL +L QLS G +R++LAR L LDEPT+ LD Sbjct: 110 DALAAVGL-TGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAG 168 Query: 192 LL 193 LL Sbjct: 169 LL 170 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 76.8 bits (190), Expect = 5e-15 Identities = 64/243 (26%), Positives = 116/243 (47%), Gaps = 22/243 (9%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 IL + L++ + LN+++L + GE+ +IG +G GK+ +M I G G V Sbjct: 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF 61 Query: 73 LGEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENISMPIKEHLNLPADL----- 125 G +L + A+ G+ FQ +F ++TV EN+ + + ++ A L Sbjct: 62 GGT--DLTGLPE--HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLS 117 Query: 126 --IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 + + + +GL E A+ + LS G + + + L DP LL LDEP +G+ Sbjct: 118 AEEKDRIEEVLETIGLADE-ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTD 176 Query: 184 IAAEEFDKLLIKL--RHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 E+ +LL L +H SV ++ HD+ + S ++V V+ + ++ EG++ + Sbjct: 177 EETEKTAELLKSLAGKH----SVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV--Q 230 Query: 242 NDP 244 DP Sbjct: 231 ADP 233 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 77.0 bits (190), Expect = 5e-15 Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 26/236 (11%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 E L V NL+ +N+++ + +GEILGV G G G++ LM+ + G +PR SG V Sbjct: 255 EVRLKVDNLSGPG-----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENISMPIKEHLNLPADL 125 + G + + A G+++ + L M+V+EN+S+ + + Sbjct: 310 TLDGHEVVTRSPQDGLAN----GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGS 365 Query: 126 IEH-----IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 ++H V I + + + LSGG ++V++AR L P +L LDEPT G Sbjct: 366 LKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236 +D A +E +L+ + + GLS+ +++ ++ ++ +R+ V M EG IS Sbjct: 426 VDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILV------MHEGRIS 474 Score = 49.2 bits (118), Expect = 9e-07 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 17/218 (7%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L+ L++ G ++ ++G +G GKS +M+ + G+ R +G + LG+ + K + Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKI--------AIVGLP 140 A +G++ Q L +T+ ENI + +E +N I K+ A + L Sbjct: 79 -AGIGIIHQELNLIPQLTIAENIFLG-REFVN----RFGRIDWKKMYAEADKLLARLNLR 132 Query: 141 PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200 + L+ +LS G + V +A+ L+ + ++ +DEPT L E +++ +L+ Sbjct: 133 FSSDKLVG-ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ- 190 Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 G + I+H L + C+ V V + + E ++D+ Sbjct: 191 GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 76.8 bits (189), Expect = 5e-15 Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 23/191 (12%) Query: 20 TIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNL 79 T ++ R ILN + GEIL V+G SG+GKS L+ + G I + +L + Sbjct: 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP 134 Query: 80 AKGKQNFAFSAKLGVLFQHGALFSSMTVQENI----------SMPIKEHLNLPADLIEHI 129 K + G + Q L+ +TV+E + S+ +E + + +I + Sbjct: 135 TK-----QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL 189 Query: 130 VHTKI--AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 TK I+G N +SGG KRVS+A + I+P LL LDEPTSGLD AA Sbjct: 190 GLTKCENTIIG------NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAY 243 Query: 188 EFDKLLIKLRH 198 L L Sbjct: 244 RLVLTLGSLAQ 254 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 76.7 bits (189), Expect = 6e-15 Identities = 66/239 (27%), Positives = 122/239 (51%), Gaps = 11/239 (4%) Query: 12 KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL---IP--RV 66 K + V++L I + + ++NL+I + IG SG GKS ++R + + IP RV Sbjct: 3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV 62 Query: 67 SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126 GEV + GE L G A +G++FQ F +M++++N+ +K + + Sbjct: 63 EGEVLLDGEDL-YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121 Query: 127 EHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 + +V + L E + + LSGG +R+ +ARA+A++PD+L +DEP S LDP Sbjct: 122 DELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP 181 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 I+ + L+ +L+ ++ ++TH++ ++ A + K G + +I D+ Sbjct: 182 ISTLAIEDLINELKQD--YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTE 238 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 76.2 bits (187), Expect = 7e-15 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 11/227 (4%) Query: 18 NLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL 77 LT+ + N+ ++I G +IG +G GKS L+R + L+ G V + GEH+ Sbjct: 12 QLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71 Query: 78 NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-----PADLIEHIVHT 132 K+ + ++G+L Q+ +TVQE ++ H L D E V Sbjct: 72 QHYASKE---VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED--EEAVTK 126 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 + G+ A+ LSGG +R +A LA + ++ LDEPT+ LD + +L Sbjct: 127 AMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185 Query: 193 LIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 L +L G ++ + HDLN + + +++ I+ +G +IV Sbjct: 186 LSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 75.6 bits (186), Expect = 1e-14 Identities = 61/245 (24%), Positives = 124/245 (50%), Gaps = 20/245 (8%) Query: 11 EKILSVRNLTIELNNRIIL---------NNINLDILRGEILGVIGSSGTGKSILMRGILG 61 E +L VRNL+ R ++ + G+ L +IG +G+GKS L + + G Sbjct: 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61 Query: 62 LIPRVSGEVKVLGEHLNLAKGKQNFAF-SAKLGVLFQHGALFSSMTVQENIS----MPIK 116 +I SGE+ + L+ ++++ S ++ ++FQ + +S+ ++ IS P++ Sbjct: 62 MIEPTSGELLIDDHPLHFG----DYSYRSQRIRMIFQDPS--TSLNPRQRISQILDFPLR 115 Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176 + +L + E + + VGL P+ A+ P L+ G +R+ LARAL + P ++ DE Sbjct: 116 LNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADE 175 Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTIS 236 + LD + L+++L+ G+S +T L + ++V V+ + +++ G+ + Sbjct: 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTA 235 Query: 237 DIVDS 241 D++ S Sbjct: 236 DVLAS 240 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 74.3 bits (182), Expect = 3e-14 Identities = 53/205 (25%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSG---EV 70 + +R + + +L NIN+D +I +IG SG GKS L+R + + VSG E Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64 Query: 71 KVLGEHLNLAKGKQNFA-FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI 129 VL ++ N+ + ++G++FQ F ++ +N++ + ++ + Sbjct: 65 AVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEV 123 Query: 130 VHTKIAIVGLPPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 V + L E + + LSGG +R+ +AR LAI+P+++ +DEP S LDP++ Sbjct: 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDL 211 ++L+ +L+ + +++ +TH++ Sbjct: 184 MRIEELMQELKQNYTIAI--VTHNM 206 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 73.7 bits (182), Expect = 5e-14 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 34/229 (14%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQN 85 L+N++L I GE + +IG G+GKS L++ +LGL G V + G ++ A ++N Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 Query: 86 FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 +G + Q LF T+++NI++ AD + + + G+ E Sbjct: 541 ------IGYVPQDPRLFYG-TLRDNIALG-----APYAD--DEEILRAAELAGVT-EFVR 585 Query: 146 LMP-----------FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 P LSGG + V+LARAL DP +L LDEPTS +D +EE + Sbjct: 586 RHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD-NRSEE--RFKD 642 Query: 195 KLRHSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 +L+ L G ++ ++TH +L+ +R+ V+ I+ +G ++++ Sbjct: 643 RLKRWLAGKTLVLVTHRT-SLLDLVDRIIVMDNGRIVADGPKDQVLEAL 690 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 73.5 bits (180), Expect = 5e-14 Identities = 59/236 (25%), Positives = 110/236 (46%), Gaps = 13/236 (5%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI---PRVS 67 + I+ V L N L+ ++L+I GE++ ++G SG+GKS L+R + GLI Sbjct: 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAG 61 Query: 68 GEVKVLGEHLNLAK--GKQNFAFSAKLGVLFQHGALFSSMTVQENI------SMPI-KEH 118 +++LG + + A G +FQ L + ++V EN+ S P + Sbjct: 62 SHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTC 121 Query: 119 LNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPT 178 + + + VG+ A+ LSGG +RV++ARAL ++ DEP Sbjct: 122 FSWFTREQKQRALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI 180 Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 + LDP +A L + + G++V + H ++ + C R+ +++ + +G+ Sbjct: 181 ASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 73.2 bits (180), Expect = 6e-14 Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 12/218 (5%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L ++N+ + ILNNI+ + GE + G SG GKS L++ + LI SG + Sbjct: 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMP--IKEHLNLPADLIEHIV 130 GE ++ K + + ++ Q LF TV +N+ P I+ PA ++ + Sbjct: 67 EGEDISTLKPE---IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLE 122 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190 LP +LSGG +R+SL R L P +L LDE TS LD + Sbjct: 123 R-----FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177 Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKG 228 +++ + ++V +THD + I+ ++V +Q Sbjct: 178 EIIHRYVREQNIAVLWVTHDKDE-INHADKVITLQPHA 214 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 72.6 bits (178), Expect = 9e-14 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 16/222 (7%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR--VSGEV 70 +L ++ + L+ I+L++ GE +G+ G +G GKS LM+ + G+ P GE+ Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA-----DL 125 G L + + A + ++ Q L ++V ENI + + LP + Sbjct: 61 YWSGSPLKASNIRDTER--AGIVIIHQELTLVPELSVAENIFL--GNEITLPGGRMAYNA 116 Query: 126 IEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIA 185 + + + L + GG + V +A+AL LL LDEP+S L Sbjct: 117 MYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL---T 173 Query: 186 AEEFDKLL--IKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225 +E + LL I+ + G++ I+H LN + + C+ + VI+ Sbjct: 174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIR 215 Score = 72.6 bits (178), Expect = 1e-13 Identities = 64/228 (28%), Positives = 121/228 (53%), Gaps = 20/228 (8%) Query: 11 EKILSVRNLTI-ELNNRII--LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP-RV 66 + IL RNLT ++ N +++++ + RGEILGV G G G++ L++ + G P + Sbjct: 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF 314 Query: 67 SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQ----HGALFSSMTVQENISMPI------K 116 G V + G+ +++ Q A A + ++ + HG + + V +NI++ + K Sbjct: 315 EGNVFINGKPVDIRNPAQ--AIRAGIAMVPEDRKRHG-IVPILGVGKNITLSVLKSFCFK 371 Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176 ++ A+L I+ + I + + + L +LSGG ++ LA+ L +P +L LDE Sbjct: 372 MRIDAAAEL--QIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE 429 Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224 PT G+D A E KL+ +L G+++ +++ +L ++ +RV VI Sbjct: 430 PTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVI 476 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 72.3 bits (178), Expect = 1e-13 Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 54/230 (23%) Query: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60 MQLN++ +V R L ++ ++ GEIL ++G +G GKS L+ + Sbjct: 1 MQLNDV--------AVST-------R--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMA 43 Query: 61 GLIPRVSGEVKVLG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQEN--ISMPI 115 GL+P SG ++ G E + A+ L +H A S Q+ +MP+ Sbjct: 44 GLLPG-SGSIQFAGQPLEAWSAAE-------------LARHRAYLSQ---QQTPPFAMPV 86 Query: 116 KEHLNL------PADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARA-LAID 168 ++L L + + ++ +GL + QLSGG +RV LA L + Sbjct: 87 FQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-SVNQLSGGEWQRVRLAAVVLQVW 145 Query: 169 PD------LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212 PD LL LDEP + LD +A + L+ G++V M +HDLN Sbjct: 146 PDINPAGQLLLLDEPMNSLD-VAQQAALDRLLSELCQQGIAVVMSSHDLN 194 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 72.3 bits (178), Expect = 1e-13 Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 58/228 (25%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 + IL +I+L G +GV+G +G GKS L+R + G+ +GE + A G Sbjct: 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR-------PAPG- 67 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL---------------------- 121 K+G L Q L + TV+EN+ + E + Sbjct: 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALL 121 Query: 122 --PADLIEHIVHTK---------IAIVGL--PPETANLMPFQLSGGMIKRVSLARALAID 168 A+L E I IA+ L PP A++ LSGG +RV+L R L Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK--LSGGERRRVALCRLLLSK 179 Query: 169 PDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD---LNN 213 PD+L LDEPT+ LD AE L L+ G +V +THD L+N Sbjct: 180 PDMLLLDEPTNHLD---AESVAWLEQHLQEYPG-TVVAVTHDRYFLDN 223 Score = 66.9 bits (164), Expect = 5e-12 Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 40/184 (21%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 +K++ NL+ +++++++++ + G I+GVIG +G GKS L R I G SG + Sbjct: 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 K+ GE + LA Q+ AL + TV E IS ++ I Sbjct: 380 KI-GETVKLAYVDQS------------RDALDPNKTVWEEIS-----------GGLDIIQ 415 Query: 131 HTKIAIVGLPPETANLMPF------------QLSGGMIKRVSLARALAIDPDLLFLDEPT 178 K + P A + F QLSGG RV LA+ L ++L LDEPT Sbjct: 416 LGKREV----PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 Query: 179 SGLD 182 + LD Sbjct: 472 NDLD 475 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 72.0 bits (177), Expect = 2e-13 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 27/237 (11%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L R+++ + + +L I+ + GE+ ++G +G GKS LM+ I G++P SG +++ Sbjct: 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70 Query: 73 LGE---HLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENI--SMPIKEHL--NLPA 123 G L AK Q LG+ Q LF +++V+ENI +P ++ + Sbjct: 71 GGNPCARLTPAKAHQ-------LGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ 123 Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 L + E A+ Q+ V + R L D +L LDEPT+ L P Sbjct: 124 LLAALGCQLDLDSSAGSLEVADR---QI-------VEILRGLMRDSRILILDEPTASLTP 173 Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 E + +L + G+ + I+H L + +R++V++ I G +D+ Sbjct: 174 AETERLFSRIRELL-AQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 Score = 63.9 bits (156), Expect = 4e-11 Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 37/244 (15%) Query: 8 SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67 + +L+V +LT E NI+L++ GEILG+ G G G++ L + GL P Sbjct: 263 AAGAPVLTVEDLTGEG-----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG 317 Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLF-----QHGALFSSMTVQENIS------MPIK 116 G + + G+ +N Q A G+++ Q L+ + N+ Sbjct: 318 GRIMLNGKEINALSTAQRLA----RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW 373 Query: 117 EHLNLPADLIE---HIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLF 173 ++E ++ K T LSGG ++V +A+ L P LL Sbjct: 374 IKPARENAVLERYRRALNIKFNHAEQAART-------LSGGNQQKVLIAKCLEASPQLLI 426 Query: 174 LDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 +DEPT G+D ++A LI+ + ++V I+ DL + +RV V M +G Sbjct: 427 VDEPTRGVD-VSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLV------MHQG 479 Query: 234 TISD 237 IS Sbjct: 480 EISG 483 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 71.1 bits (175), Expect = 3e-13 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 21/237 (8%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV---SGEV 70 L +++L + + ++ IL +NL + +GEI ++G +G+GKS L + I G P SG + Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTI 59 Query: 71 KVLGEHLNLAKGKQNFAFSAKLGVL--FQHGALFSSMTVQE------NISMPIKEHLNLP 122 G+ L + + A+ G+ FQ+ ++ E N + L Sbjct: 60 LFKGQDLLELEPDER----ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLD 115 Query: 123 ADLIEHIVHTKIAIVGLPPETAN-LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGL 181 ++ K+A++G+ E N + SGG KR + + ++P L LDE SGL Sbjct: 116 LLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGL 175 Query: 182 DPIAAEEFDKLLIKLRHSLGLSVYMITHDLN--NLISTCNRVAVIQKKGIMKEGTIS 236 D A + + + +LR S +ITH N I + V V+ I+K G + Sbjct: 176 DIDALKIVAEGINRLR-EPDRSFLIITHYQRLLNYI-KPDYVHVLLDGRIVKSGDVE 230 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 70.3 bits (173), Expect = 4e-13 Identities = 61/272 (22%), Positives = 120/272 (44%), Gaps = 53/272 (19%) Query: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILN--------NINLDILRGEILGVIGSSGTGK 52 L + E+++ S +TIE + IL+ +N + G+ + ++G SG GK Sbjct: 330 TPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGK 389 Query: 53 SILMRGILGLIPRVSGEVKVLGEHL---NLAKGKQNFAFSAKLGVLFQHGALFSSMTVQE 109 + L+ +LG +P G +K+ G L + +++ ++ +G Q+ L T+++ Sbjct: 390 TSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSW---VG---QNPQLPHG-TLRD 441 Query: 110 NISMP-----------------IKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLS 152 N+ + + E L L ++ + + A LS Sbjct: 442 NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA--------------GLS 487 Query: 153 GGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLN 212 G +R++LARAL LL LDEPT+ LD + + + L S + M+TH L Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA--SRRQTTLMVTHQLE 545 Query: 213 NLISTCNRVAVIQKKGIMKEGTISDIVDSNDP 244 +L + +++ V+Q I+++G +++ + Sbjct: 546 DL-AQWDQIWVMQDGQIVQQGDYAELSQAGGL 576 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 69.7 bits (170), Expect = 7e-13 Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 9/224 (4%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L+ +L + +L +NLD + G++G++G GKS L + GL+ G V Sbjct: 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQ--HGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130 G+ L+ +K + A ++ +FQ +F + + +I+ ++ +L +P I V Sbjct: 61 QGKPLDYSK-RGLLALRQQVATVFQDPEQQIFYT-DIDSDIAFSLR-NLGVPEAEITRRV 117 Query: 131 HTKIAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF 189 + +V + P Q LS G KRV++A AL + L LDEPT+GLDP + Sbjct: 118 DEALTLVD--AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQM 175 Query: 190 DKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEG 233 +I+ + G V + +HD++ + + V V+++ I+ G Sbjct: 176 IA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 69.9 bits (171), Expect = 7e-13 Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 24/247 (9%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP-------- 64 +L+ +L + +R IL +++L I G + ++G +G GKS L++ + G + Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60 Query: 65 RVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPAD 124 RV+G+V + GE L + A L Q FS +E + + H Sbjct: 61 RVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFS---AREIVLLGRYPHARRAGA 117 Query: 125 LIEH---IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALA---------IDPDLL 172 L I +A+ G + LSGG + RV AR LA P L Sbjct: 118 LTHRDGEIAWQALALAGATALVGRDVT-TLSGGELARVQFARVLAQLWPPHDAAQPPRYL 176 Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232 LDEPT+ LD + +L L V I HD N +R+A++ I+ Sbjct: 177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 Query: 233 GTISDIV 239 G +D++ Sbjct: 237 GAPADVL 243 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 69.1 bits (170), Expect = 1e-12 Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 31/191 (16%) Query: 32 INLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ-NFAFSA 90 I+LD+ GE + ++G SG GKS L+R + GL SGE+ + G +N + + A Sbjct: 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIA--- 79 Query: 91 KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM--- 147 ++FQ+ AL+ M+V+EN++ +K +P IE V I+ L P L+ Sbjct: 80 ---MVFQNYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEP----LLDRK 131 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL-------LIKLRHSL 200 P +LSGG +RV++ RA+ +P + DEP S LD KL + +L L Sbjct: 132 PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA-------KLRVQMRLEIQRLHRRL 184 Query: 201 GL-SVYMITHD 210 S+Y +THD Sbjct: 185 KTTSLY-VTHD 194 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 68.8 bits (168), Expect = 1e-12 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 16/219 (7%) Query: 14 LSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 + V ++T+ N L + + + G I ++G +G+GKS L + ++G + SG++ + Sbjct: 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66 Query: 73 LGEHLNLAKGKQNFAF---SAKLGVLFQHGALFSSMTVQENISMPIKEH---LNLPADLI 126 LG+ A K A+ S ++ F + V++ + M H L Sbjct: 67 LGQPTRQALQKNLVAYVPQSEEVDWSF-------PVLVEDVVMMGRYGHMGWLRRAKKRD 119 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 IV +A V + E + +LSGG KRV LARA+A ++ LDEP +G+D Sbjct: 120 RQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225 LL +LR G ++ + TH+L ++ C+ +++ Sbjct: 179 ARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK 216 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 68.7 bits (169), Expect = 2e-12 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 58/285 (20%) Query: 3 LNNIPSQEEKI-------LSVRNLTIELNN---------RIILNNINLDILRGEILGVIG 46 +N I Q+ ++ + +++ LNN + +L ++L I GE + ++G Sbjct: 314 INEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373 Query: 47 SSGTGKSILMRGILGLIPRV----SGEVKVLGEHLNLAKGKQNFAFS-----AKLGVLFQ 97 +G GKS L L L+ R GE+ + G+ + +S + V+ Q Sbjct: 374 RTGCGKSTL----LQLLTRAWDPQQGEILLNGQPIA--------DYSEAALRQAISVVSQ 421 Query: 98 HGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPF-------- 149 LFS+ T+++N+ + + + + + VGL + Sbjct: 422 RVHLFSA-TLRDNLLLAA-------PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473 Query: 150 -QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208 QLSGG +R+ +ARAL D LL LDEPT GLD + +LL H+ +V MIT Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL--AEHAQNKTVLMIT 531 Query: 209 HDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYFNRF 253 H L L +R+ V+ I+++GT +++ + R Sbjct: 532 HRLTGLEQF-DRICVMDNGQIIEQGTHQELL-AQQGRYYQLKQRL 574 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 68.3 bits (168), Expect = 2e-12 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 12/197 (6%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 L RNL E + RI+ + ++ + GE++ + G +G GK+ L+R + GL +GEV Sbjct: 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ 61 Query: 74 GEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTK 133 GE + +Q + L L + + +T EN+ + H + + Sbjct: 62 GEPIR----RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEA---- 113 Query: 134 IAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL 193 +A VGL ++ QLS G +RV+LAR L LDEP + +D + LL Sbjct: 114 LAQVGL-AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172 Query: 194 IKLRH-SLGLSVYMITH 209 +H G V + TH Sbjct: 173 --AQHAEQGGMVILTTH 187 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 65.7 bits (161), Expect = 1e-11 Identities = 63/247 (25%), Positives = 112/247 (45%), Gaps = 36/247 (14%) Query: 17 RNLTIELN--NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74 RN+T + ++ N +L + G+ + ++G SG+GKS + + + GL SGE+ G Sbjct: 481 RNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG 540 Query: 75 EHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-----SMPIKEHLNLPADLIEH 128 + + + + ++ Q LF TV++N+ ++P + + D H Sbjct: 541 IPREEIPRE----VLANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIH 595 Query: 129 IVHTKIAIVGLPPE--------TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 V I P ANL SGG +R+ +ARAL +P +L LDE TS Sbjct: 596 DV-----ITSRPGGYDAELAEGGANL-----SGGQRQRLEIARALVRNPSILILDEATSA 645 Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240 LDP + D LR G + ++ H L+ I C+ + V+++ +++ GT ++ Sbjct: 646 LDPETEKIIDD---NLRRR-GCTCIIVAHRLST-IRDCDEIIVLERGKVVQRGTHEELWA 700 Query: 241 SNDPWIR 247 + R Sbjct: 701 VGGAYAR 707 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 65.9 bits (161), Expect = 1e-11 Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 38/235 (16%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG------EHLN 78 + +L + + GE++ ++G SG+GKS + + L G+V + G +H Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552 Query: 79 LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI-----SMPIKEHLNLPA-----DLIEH 128 L + ++ ++ Q LFS +V+ENI P +E + D I Sbjct: 553 LHR---------QVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIME 602 Query: 129 IVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE 188 + VG E + QLSGG +R+++ARAL P +L LDE TS LD E Sbjct: 603 FPNGYDTEVG---EKGS----QLSGGQKQRIAIARALVRKPRVLILDEATSALDA----E 651 Query: 189 FDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 ++LL + R +V +I H L + + +++ V++K +++ GT +++ Sbjct: 652 CEQLLQESRSRASRTVLLIAHRL-STVERADQILVLKKGSVVEMGTHKQLMEDQG 705 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 65.7 bits (160), Expect = 1e-11 Identities = 58/234 (24%), Positives = 114/234 (48%), Gaps = 24/234 (10%) Query: 10 EEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS-G 68 E+ +LS ++ L+ ++L I +GEI+ +IG++G GK+ L+ G L PR + G Sbjct: 2 EKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLL-GTLCGDPRATSG 60 Query: 69 EVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--------PIKEHLN 120 + G+ ++ + + ++ + +FS MTV+EN++M +E + Sbjct: 61 RIVFDGK--DITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK 118 Query: 121 LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 +L + +I G +SGG + +++ RAL P LL LDEP+ G Sbjct: 119 WVYELFPRLHERRIQRAG-----------TMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167 Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234 L PI ++ + +LR G++++++ + N + +R V++ ++ E T Sbjct: 168 LAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 65.5 bits (161), Expect = 1e-11 Identities = 67/227 (29%), Positives = 95/227 (41%), Gaps = 58/227 (25%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84 + IL +I+L G +GV+G +G GKS L+R + G+ GE + A G Sbjct: 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR-------PAPG-- 69 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL-------------P--------- 122 K+G L Q L TV+EN+ + E P Sbjct: 70 -----IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAA 124 Query: 123 --ADLIEHIVH-------TKIAI----VGLPPETANLMPFQLSGGMIKRVSLARALAIDP 169 +L E I +++ I + PP A + +LSGG +RV+L R L P Sbjct: 125 EQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT--KLSGGERRRVALCRLLLEKP 182 Query: 170 DLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD---LNN 213 D+L LDEPT+ LD AE L L G +V +THD L+N Sbjct: 183 DMLLLDEPTNHLD---AESVAWLEQFLHDYPG-TVVAVTHDRYFLDN 225 Score = 58.6 bits (143), Expect = 1e-09 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 40/183 (21%) Query: 12 KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 K++ NL+ +R+++++++ + G I+G+IG +G GKS L + I G SG +K Sbjct: 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK 382 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 + GE + LA Q+ AL + TV E IS ++ I Sbjct: 383 I-GETVKLAYVDQS------------RDALDPNKTVWEEIS-----------GGLDIIKV 418 Query: 132 TKIAIVGLPPETANLMPF------------QLSGGMIKRVSLARALAIDPDLLFLDEPTS 179 I P A + F LSGG R+ LA+ L ++L LDEPT+ Sbjct: 419 GNREI----PSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474 Query: 180 GLD 182 LD Sbjct: 475 DLD 477 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 65.5 bits (160), Expect = 1e-11 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 20/226 (8%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQ 84 ++ L+ +NL + GE + ++G SG GKS L + +L SG + + G L + Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA-----IVGL 139 A++ ++ Q LF++ +V ENI A E + A I L Sbjct: 412 ---LRARMALVPQDPVLFAA-SVMENIRYG-----RPDATDEEVEAAARAAHAHEFISAL 462 Query: 140 PPETANLM---PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL 196 P + LSGG +R+++ARA+ D +L LDE TS LD + + + L L Sbjct: 463 PEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL 522 Query: 197 RHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 G + +I H L ++ +R+ V+ + I+ +GT ++++ Sbjct: 523 --MKGRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHAELIAKG 565 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 64.8 bits (158), Expect = 2e-11 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 18/225 (8%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL-NLAKGK 83 IL++I+L I ++G SG+GKS L + ++G SGE+ + G L ++ + Sbjct: 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH- 544 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEH---IVHTKIAIVGLP 140 + L Q +FS ++ EN+ + KE N+ D I I K I +P Sbjct: 545 ---TLRQFINYLPQEPYIFSG-SILENLLLGAKE--NVSQDEIWAACEIAEIKDDIENMP 598 Query: 141 ---PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197 + +SGG +R++LARAL D +L LDE TS LD I ++ L+ L+ Sbjct: 599 LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658 Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 ++ + H L ++ +++ V+ I+++G+ +++D N Sbjct: 659 DK---TIIFVAHRL-SVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 63.6 bits (155), Expect = 5e-11 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 28/204 (13%) Query: 10 EEKILSVRNLT----IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPR 65 E I RNLT I+ R+ILNN++ + G + ++G+SG GK+ L+ L R Sbjct: 756 GEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNV---LAER 812 Query: 66 VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI----------SMPI 115 V+ V G+ L + + +F +G + Q + TV+E++ S+ Sbjct: 813 VTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSK 871 Query: 116 KEHLNLPADLIEHIVHTKI--AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLL- 172 E + ++I+ + A+VG+P E L+ KR+++ L P LL Sbjct: 872 SEKMEYVEEVIKLLEMESYADAVVGVPGEG-------LNVEQRKRLTIGVELVAKPKLLL 924 Query: 173 FLDEPTSGLDPIAAEEFDKLLIKL 196 FLDEPTSGLD A KL+ KL Sbjct: 925 FLDEPTSGLDSQTAWSICKLMRKL 948 Score = 51.3 bits (123), Expect = 3e-07 Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 31/187 (16%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP----RVSGEVKVLGEHLNLAKGK 83 IL ++ I GE+ V+G G+G S L++ I V G + G + + K Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG--ITPEEIK 133 Query: 84 QNF----AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA---------DLIEHIV 130 +++ ++A+ V F H +TV E + + P + +HI Sbjct: 134 KHYRGDVVYNAETDVHFPH------LTVGETLDFAAR--CKTPQNRPDGVSREEYAKHIA 185 Query: 131 HTKIAIVGLP----PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 +A GL + N +SGG KRVS+A A + D T GLD A Sbjct: 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245 Query: 187 EEFDKLL 193 EF + L Sbjct: 246 LEFIRAL 252 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 63.1 bits (154), Expect = 6e-11 Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 28/208 (13%) Query: 12 KILSVRNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 + L +RN+T +N + INL I RGE+L +IG +G+GKS L + GL SGE+ Sbjct: 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 Query: 71 KVLGEHLNLAKGKQNFA--FSAKLGVLFQHGALFSSMTVQENISMPIK------EHLNLP 122 + G+ + A+ +++ FSA +F LF + E E L + Sbjct: 381 LLDGKPVT-AEQPEDYRKLFSA----VFTDFHLFDQLLGPEGKPANPALVEKWLERLKMA 435 Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 L + +I+ NL +LS G KR++L ALA + D+L LDE + D Sbjct: 436 HKL--ELEDGRIS---------NL---KLSKGQKKRLALLLALAEERDILLLDEWAADQD 481 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHD 210 P EF ++L+ L +G +++ I+HD Sbjct: 482 PHFRREFYQVLLPLLQEMGKTIFAISHD 509 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 63.2 bits (154), Expect = 7e-11 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 22/221 (9%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS-GEVKVLGEHLNLAKG 82 R L+NINLD+ G ++ ++GS+G GK+ L+ +LG +P S V + G + + Sbjct: 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQV 687 Query: 83 KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142 F + + +LF G+ F + I + +H DL+ T+I G+ Sbjct: 688 SWIFNATVRDNILF--GSPFDPERYERAIDVTALQH---DLDLLPGGDLTEIGERGV--- 739 Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLI-KLRHSL 200 +SGG +RVS+ARA+ + D+ D+P S LD + + FDK + +LR Sbjct: 740 -------NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGK- 791 Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 + ++T+ L+ L S +R+ ++ + I +EGT ++ ++ Sbjct: 792 --TRVLVTNQLHFL-SQVDRIILVHEGMIKEEGTYEELSNN 829 Score = 45.5 bits (108), Expect = 1e-05 Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 43/216 (19%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG---EHLNLAKGKQ 84 +L+ ++ +I E +G++G +G GKS ++ + ++ G + + G L ++ Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI--VHTKIAI----VG 138 LG++ Q LFS TV+ N+ P EH + ADL E + H K I +G Sbjct: 1314 V------LGIIPQAPVLFSG-TVRFNLD-PFNEHND--ADLWESLERAHLKDVIRRNSLG 1363 Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD--------PIAAEEFD 190 L E + S G + +SLARAL +L LDE T+ +D EEF Sbjct: 1364 LDAEVSEAGE-NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 1422 Query: 191 K--LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVI 224 +LI I H LN +I C+R+ V+ Sbjct: 1423 SCTMLI------------IAHRLNTIID-CDRILVL 1445 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 62.8 bits (153), Expect = 7e-11 Identities = 69/252 (27%), Positives = 111/252 (44%), Gaps = 47/252 (18%) Query: 14 LSVRNLTIEL--NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----S 67 + RN+T +R L++I+L I GE + ++G SG+GKS L+ LIPR S Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVN----LIPRFYEPDS 386 Query: 68 GEVKVLG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI--------SMPIK 116 G++ + G LA ++ A + Q LF+ T+ NI Sbjct: 387 GQILLDGHDLADYTLASLRRQVALVS------QDVVLFND-TIANNIAYGRTEQADRAEI 439 Query: 117 EHLNLPADLIEHI------VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPD 170 E A + + + T I G+ LSGG +R+++ARAL D Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGV----------LLSGGQRQRLAIARALLKDAP 489 Query: 171 LLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIM 230 +L LDE TS LD + L +L G + +I H L+ I +R+ V+ I+ Sbjct: 490 ILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLST-IEKADRIVVMDDGRIV 546 Query: 231 KEGTISDIVDSN 242 + GT ++++ N Sbjct: 547 ERGTHNELLARN 558 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 62.8 bits (153), Expect = 9e-11 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 21/198 (10%) Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV--LGEHLNLAKG 82 +L N++L + GE + + G SG GKS L++ + SG + V G ++LA+ Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79 Query: 83 ---------KQNFAF-SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 ++ + S L V+ + AL +P + +L+ + Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARL--- 136 Query: 133 KIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKL 192 +P +L P SGG +RV++AR D +L LDEPT+ LD + +L Sbjct: 137 -----NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191 Query: 193 LIKLRHSLGLSVYMITHD 210 + + + G ++ I HD Sbjct: 192 IAEAKAR-GAALIGIFHD 208 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 62.3 bits (152), Expect = 1e-10 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 50/214 (23%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI----------------------PR 65 +L+N L I E + ++G +G GKS LM+ + G + PR Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77 Query: 66 ---------VSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK 116 V+ ++ E+L K+ S + L +QE + Sbjct: 78 NVEGTVYDFVAEGIEEQAEYL-----KRYHDISHLVETDPSEKNLNELAKLQEQL----- 127 Query: 117 EHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDE 176 +H NL +E+ ++ +A +GL P+ LSGG +++ +L RAL +PD+L LDE Sbjct: 128 DHHNLW--QLENRINEVLAQLGLDPDA---ALSSLSGGWLRKAALGRALVSNPDVLLLDE 182 Query: 177 PTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210 PT+ LD E + L + S+ ++ I+HD Sbjct: 183 PTNHLDIETIEWLEGFLKTFQGSI---IF-ISHD 212 Score = 48.8 bits (117), Expect = 1e-06 Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 74/196 (37%) Query: 16 VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE 75 + N+ +++ + ++ + + + RG+ + +IG +G GK+ L++ +LG + SG + G Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT 380 Query: 76 HL--------------------NLAKGKQNFAFSAK----LGVL--FQHGALFS---SMT 106 L NLA+GKQ + + LG L F LF +MT Sbjct: 381 KLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDF----LFHPKRAMT 436 Query: 107 VQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALA 166 P+K LSGG R+ LAR Sbjct: 437 -------PVK---------------------------------ALSGGERNRLLLARLFL 456 Query: 167 IDPDLLFLDEPTSGLD 182 +LL LDEPT+ LD Sbjct: 457 KPSNLLILDEPTNDLD 472 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 62.2 bits (152), Expect = 1e-10 Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 41/233 (17%) Query: 31 NINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL--------NLAKG 82 +NL + I + G SG GK+ L+ I GL G + VL + L Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGICLPPE 74 Query: 83 KQNFAFSAKLGVLFQHGALFSSMTVQENI------SMPIKEHLNLPADL--IEHIVHTKI 134 K+ ++G +FQ LF V+ N+ SM + L IE ++ Sbjct: 75 KR------RIGYVFQDARLFPHYKVRGNLRYGMAKSMV--AQFDKIVALLGIEPLL---- 122 Query: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 + P LSGG +RV++ RAL P+LL +DEP + LD E L Sbjct: 123 ----------DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLE 172 Query: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN--DPW 245 +L + + + ++H L+ ++ +RV V+++ + G + ++ S+ PW Sbjct: 173 RLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRPW 225 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 61.5 bits (150), Expect = 2e-10 Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 38/236 (16%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----SGEVKVLGEH--- 76 N+R + +++ + G+ + ++G +G GKS L + L+ RV SG + + G Sbjct: 346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTL----INLLQRVFDPQSGRILIDGTDIRT 401 Query: 77 LNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM----PIKEHLNLPA------DLI 126 + A ++N + V+FQ LF+ ++++NI + E + A D I Sbjct: 402 VTRASLRRN------IAVVFQDAGLFNR-SIEDNIRVGRPDATDEEMRAAAERAQAHDFI 454 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 E +VG E QLSGG +R+++ARAL DP +L LDE TS LD Sbjct: 455 ERKPDGYDTVVG---ERGR----QLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507 Query: 187 EEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 + L +L G + ++I H L+ + +R+ V +++ G+ ++V Sbjct: 508 AKVKAALDELMK--GRTTFIIAHRLST-VRNADRILVFDNGRVVESGSFDELVARG 560 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 60.5 bits (147), Expect = 4e-10 Identities = 66/256 (25%), Positives = 117/256 (45%), Gaps = 41/256 (16%) Query: 5 NIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64 N P E IL VRNLT L I +++ D+ +GEILG+ G G ++ ++ + G+ Sbjct: 244 NKP--GEVILEVRNLT-SLRQPSI-RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE 299 Query: 65 RVSGEVKVLGEHLNLAKG----KQNFAFS----------AKLGVLFQHGALFSSMTVQEN 110 + +G + + G+ +N FA A L + F +L S++ +N Sbjct: 300 KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN--SLISNIRNYKN 357 Query: 111 ISMPIKEHLNLPADLIEHIVHTKIAI----VGLPPETANLMPFQLSGGMIKRVSLARALA 166 + + ++ + +D T+ I V P + LSGG ++V + R L Sbjct: 358 -KVGLLDNSRMKSD-------TQWVIDSMRVKTPGHRTQIG--SLSGGNQQKVIIGRWLL 407 Query: 167 IDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQK 226 P++L LDEPT G+D A E +L+ +L + +I+ ++ L+ +R+ V Sbjct: 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILV--- 463 Query: 227 KGIMKEGTISDIVDSN 242 M G ++ IVD+ Sbjct: 464 ---MSNGLVAGIVDTK 476 Score = 47.8 bits (114), Expect = 3e-06 Identities = 43/204 (21%), Positives = 90/204 (44%), Gaps = 16/204 (7%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L+N+NL + I ++G +G GKS L++ + G+ + SG + G+ ++ K+ A Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE--AL 71 Query: 89 SAKLGVLFQHGALFSSMTVQENISM---PIK----EHLNLPADLIEHIVHTKIAIVGLPP 141 + ++ Q L +V +N+ + P K + + D I I P Sbjct: 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDID--PR 129 Query: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLG 201 LS ++ + +A+A + + ++ +DEPTS L ++ KL+ G Sbjct: 130 AKVA----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-G 184 Query: 202 LSVYMITHDLNNLISTCNRVAVIQ 225 + I+H + + C+ + +++ Sbjct: 185 CGIVYISHKMEEIFQLCDEITILR 208 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 59.0 bits (143), Expect = 1e-09 Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 48/242 (19%) Query: 15 SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLG 74 ++R T + L N+N + G++LG+ G +G+GKS L L LI R Sbjct: 317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTL----LSLIQR--------- 363 Query: 75 EHLNLAKGKQNF-----------AFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPA 123 H ++++G F ++ ++L V+ Q LFS TV NI++ + Sbjct: 364 -HFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIAL---GRPDATQ 418 Query: 124 DLIEHI-----VHTKIAIVGLPP--ETA----NLMPFQLSGGMIKRVSLARALAIDPDLL 172 IEH+ VH I + LP +T +M LSGG +R+S+ARAL ++ ++L Sbjct: 419 QEIEHVARLASVHDDI--LRLPQGYDTEVGERGVM---LSGGQKQRISIARALLLNAEIL 473 Query: 173 FLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232 LD+ S +D + L + G +V + H L+ L + + + V+Q I + Sbjct: 474 ILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSAL-TEASEILVMQHGHIAQR 530 Query: 233 GT 234 G Sbjct: 531 GN 532 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 58.7 bits (142), Expect = 1e-09 Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 37/230 (16%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 LNNI+ ++ GEI+G+IG +G+GKS L I G+ G V + G +A Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAIS------ 93 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148 L +T ENI + + L + I+ I+ I E A++ Sbjct: 94 ----------SGLNGQLTGIENIELK-GLMMGLTKEKIKEIIPEII-------EFADIGK 135 Query: 149 F------QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF-DKLLIKLRH--S 199 F S GM R+ A ++ I+PD+L +DE S + + F K L K+ Sbjct: 136 FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALS----VGDQTFTKKCLDKMNEFKE 191 Query: 200 LGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSY 249 G +++ I+H L+ + S C + + + + G I ++VD D +++ Y Sbjct: 192 QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKY 241 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 58.7 bits (142), Expect = 1e-09 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 11/177 (6%) Query: 7 PSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66 +L+ L N + ++ + GE L V G +G GK+ L+R + GL+ Sbjct: 5 LHTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE 64 Query: 67 SGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLI 126 SG++++ G+ + A+ L L + ++ EN+ H Sbjct: 65 SGQIQIDGKTATRGDRSRFMAYLGHL------PGLKADLSTLENLHFLCGLHGRRA---- 114 Query: 127 EHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 + + + +AIVGL L+ QLS G KR++LAR L LDEP + LD Sbjct: 115 KQMPGSALAIVGLAGYEDTLVR-QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 57.6 bits (139), Expect = 3e-09 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 34/179 (18%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILG-LIP-----RVSGEVKVLGEHLNLAK 81 +L NI+ + +G++L V GS+G+GKS L+ I+G L P + SG + + + Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMP 500 Query: 82 G--KQNFAFSAKLGVLFQHGALFSSMTVQENIS-MPIKEHLNLPADLIEHIVHTKIAIVG 138 G K N F +++ ++ + ++E+I+ P K+ L I Sbjct: 501 GTIKDNIIFGLSYDE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGI------------ 547 Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEE-FDKLLIKL 196 LSGG R+SLARA+ D DL LD P + LD + +E F+ L KL Sbjct: 548 -----------TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595 Score = 48.0 bits (114), Expect = 2e-06 Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 27/199 (13%) Query: 7 PSQEEKILSVRNLTIELNN--RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64 PS + + V+ LT + R +L +++ + G+ +G++G +G+GKS L+ +L L+ Sbjct: 1213 PSGGQ--MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL- 1269 Query: 65 RVSGEVKVLG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL 121 GE+++ G + L ++ F GV+ Q +FS T ++N+ P ++ + Sbjct: 1270 STEGEIQIDGVSWNSVTLQTWRKAF------GVIPQKVFIFSG-TFRKNLD-PYEQWSDE 1321 Query: 122 PADLIEHIVHTKIAIVGLPPETANLMPFQL-------SGGMIKRVSLARALAIDPDLLFL 174 + V K I P + + F L S G + + LAR++ +L L Sbjct: 1322 EIWKVAEEVGLKSVIEQFPDK----LDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 Query: 175 DEPTSGLDPIAAEEFDKLL 193 DEP++ LDP+ + K L Sbjct: 1378 DEPSAHLDPVTLQIIRKTL 1396 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 57.5 bits (139), Expect = 3e-09 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 25/166 (15%) Query: 22 ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK 81 EL +++L ++++ + RG++ V+G++G+GKS L++ +L G V A+ Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------WAE 720 Query: 82 GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHI----VHTKIAIV 137 ++ A+ V Q A + TV+ NI +E A L + + + +A + Sbjct: 721 --RSIAY-----VPQQ--AWIMNATVRGNILFFDEED---AARLADAVRVSQLEADLAQL 768 Query: 138 GLPPETA-NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 G ET LSGG RVSLARA+ + D+ LD+P S LD Sbjct: 769 GGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 Score = 32.8 bits (75), Expect = 0.089 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 39/176 (22%) Query: 27 IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHL---NLAKGK 83 ++L ++ I E +G++G +G+GKS L+ + ++ GE++V G + L + + Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143 + F+ + VLF TV++N+ P E A+ V + +VGL Sbjct: 1384 RQFSMIPQDPVLFDG-------TVRQNVD-PFLE--ASSAE-----VWAALELVGLRERV 1428 Query: 144 ANLMPFQLSGGMIKRV---------------SLARA-LAIDPDLLFLDEPTSGLDP 183 A+ S G+ RV +ARA L + +DE T+ +DP Sbjct: 1429 AS-----ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP 1479 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 57.3 bits (138), Expect = 4e-09 Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 27/224 (12%) Query: 27 IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK-GKQN 85 ++L +IN+ I GE +G++G +G GKS L G+ + GE+ + G LN+AK G + Sbjct: 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG--LNIAKIGLHD 1357 Query: 86 FAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETAN 145 F K+ ++ Q LFS +++ N+ P ++ + + H K + LP + Sbjct: 1358 LRF--KITIIPQDPVLFSG-SLRMNLD-PFSQYSDEEVWWALELAHLKTFVSALPDK--- 1410 Query: 146 LMPFQ-------LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLL---IK 195 + + LS G + V LARAL +L LDE T+ +D E D L+ I+ Sbjct: 1411 -LDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD----LETDNLIQSTIR 1465 Query: 196 LRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239 + +V I H LN ++ RV V+ K + + G S+++ Sbjct: 1466 TQFE-DCTVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNLL 1507 Score = 56.9 bits (137), Expect = 6e-09 Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 27/213 (12%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 LN I I G ++ V+G G GKS L+ +L + +V G V + G + + Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND 713 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL--IEHIVHTKIAIVGLPPETANL 146 S + +LF + E + E L DL + T+I G+ Sbjct: 714 SLRENILFGK-------ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGV------- 759 Query: 147 MPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLIKLRHSLGLSVY 205 LSGG +RVSLARA+ + D+ D+P S +D + F+ ++ + Sbjct: 760 ---NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRI 816 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 ++TH IS +V VI +M G IS++ Sbjct: 817 LVTHG----ISYLPQVDVII---VMSGGKISEM 842 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 55.6 bits (134), Expect = 1e-08 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 23/194 (11%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83 +RIIL++I L+++ G +G++G +G GKS L++ + G + VSGE+ LAKG Sbjct: 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-------GLAKG- 374 Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143 KLG QH F + E+ P++ L +E + + G + Sbjct: 375 ------IKLGYFAQHQLEF--LRADES---PLQHLARLAPQELEQKLRDYLGGFGFQGDK 423 Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203 + SGG R+ LA + P+LL LDEPT+ LD + + LI +L Sbjct: 424 VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGAL--- 480 Query: 204 VYMITHDLNNLIST 217 +++HD + L ST Sbjct: 481 -VVVSHDRHLLRST 493 Score = 40.2 bits (94), Expect = 5e-04 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 4/80 (5%) Query: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211 SGG R++LA+AL DLL LDEPT+ LD A +K L + +L L I+HD Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLIL----ISHDR 206 Query: 212 NNLISTCNRVAVIQKKGIMK 231 + L +++ I+++ + + Sbjct: 207 DFLDPIVDKIIHIEQQSLFE 226 Score = 29.0 bits (65), Expect = 1.3 Identities = 14/38 (36%), Positives = 23/38 (60%) Query: 19 LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILM 56 L I R++L+N I G+ +G++G +G GKS L+ Sbjct: 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL 44 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 55.0 bits (132), Expect = 2e-08 Identities = 56/216 (25%), Positives = 107/216 (49%), Gaps = 22/216 (10%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV-SGEVKVLGEHLNLAKGKQNFA 87 L++INL+I G ++ ++G +G GK+ L+ +LG + + V + G + + F Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 Query: 88 FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147 + + +LF G+ F S I + +H DL+ T+I G+ Sbjct: 693 ATVRENILF--GSDFESERYWRAIDVTALQH---DLDLLPGRDLTEIGERGV-------- 739 Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-IAAEEFDKLLIKLRHSL-GLSVY 205 +SGG +RVS+ARA+ + D+ D+P S LD +A + FD ++ L G + Sbjct: 740 --NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC---MKDELKGKTRV 794 Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDS 241 ++T+ L + + +R+ ++ + I +EGT +++ S Sbjct: 795 LVTNQL-HFLPLMDRIILVSEGMIKEEGTFAELSKS 829 Score = 50.7 bits (121), Expect = 4e-07 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 28/227 (12%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87 +L+ ++ + E +GV+G +G GKS ++ + ++ G + + + ++AK F Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMI--DDCDVAK----FG 1304 Query: 88 FS---AKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE--HIVHTKIAI----VG 138 + L ++ Q LFS TV+ NI P EH + ADL E H K I G Sbjct: 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNID-PFSEHND--ADLWEALERAHIKDVIDRNPFG 1360 Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK-LR 197 L E + S G + +SLARAL +L LDE T+ +D D L+ + +R Sbjct: 1361 LDAEVSEGGE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDV----RTDSLIQRTIR 1415 Query: 198 HSL-GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243 ++ +I H LN +I C+++ V+ +++ + +++ S D Sbjct: 1416 EEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELL-SRD 1460 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 54.6 bits (132), Expect = 2e-08 Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 39/232 (16%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----SGEVKVLGEHLN---LAK 81 L NIN I G+ + ++G SG+GKS I L+ R GE+ + G L LA Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKST----IANLLTRFYDIDEGEILLDGHDLRDYTLAS 414 Query: 82 GKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEH-----------LNLPADLIEHIV 130 + A ++ Q+ LF+ T+ NI+ E + D I + Sbjct: 415 LRNQVA------LVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190 + ++G E L LSGG +R+++ARAL D +L LDE TS LD + Sbjct: 468 NGLDTVIG---ENGVL----LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520 Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSN 242 L +L+ + + +I H L+ I + + V++ I++ GT ++++ N Sbjct: 521 AALDELQKN--RTSLVIAHRLST-IEKADEILVVEDGEIVERGTHAELLAQN 569 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 53.7 bits (129), Expect = 4e-08 Identities = 25/77 (32%), Positives = 46/77 (59%) Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 P++L+ G ++V +A ALA P LL DEPT+ ++P + +LL +L + ++ +I Sbjct: 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI 215 Query: 208 THDLNNLISTCNRVAVI 224 +HDL L +++ V+ Sbjct: 216 SHDLQMLSQWADKINVL 232 Score = 40.9 bits (96), Expect = 3e-04 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 4/54 (7%) Query: 13 ILSVRNLTIELNNR----IILNNINLDILRGEILGVIGSSGTGKSILMRGILGL 62 +L +RNLTIE ++ +++ + GEI G++G SG+GKS++ + I G+ Sbjct: 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 53.3 bits (128), Expect = 7e-08 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 46/222 (20%) Query: 12 KILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMR-----GILGLIPR- 65 K + + N +I + R ++ + ++ + G G++G +GTGK+ +R I G IP+ Sbjct: 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG-IPKN 234 Query: 66 -----VSGEV-------------------KVLGEHLNLAKGKQNFAFSAKLGVLFQHGAL 101 V EV ++L E L ++ F + G G Sbjct: 235 CQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETG----KGKG 290 Query: 102 FSSMTVQENISMPIKEHLN--------LPADLIEHIVHTKIAIVGLPPETANLMPFQLSG 153 + V ++ + + L + A E + +A + PE SG Sbjct: 291 ANKDGVDKD---AVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSG 347 Query: 154 GMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIK 195 G R++LARAL I+PDLL LDEPT+ LD A + L+K Sbjct: 348 GWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK 389 Score = 42.2 bits (99), Expect = 1e-04 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 30/193 (15%) Query: 27 IILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF 86 ++ N+N I + ++G +G GKS +++ I G + SG V Sbjct: 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV---------------- 566 Query: 87 AF-SAKLGVLFQHGALFSSMTVQ--ENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPET 143 F SAK+ + A+FS V + S P+ + + E + + G+ Sbjct: 567 -FRSAKVRM-----AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL 620 Query: 144 ANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLS 203 A + LSGG RV+ A+ P +L LDEP++ LD A E + L+ + Sbjct: 621 ALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQG----G 676 Query: 204 VYMITHDLNNLIS 216 V M++HD +LIS Sbjct: 677 VLMVSHD-EHLIS 688 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 52.9 bits (127), Expect = 8e-08 Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 38/168 (22%) Query: 39 GEILGVIGSSGTGKSILM-----RGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLG 93 G + ++G SG GK+ LM R G I G++++ G K ++ FA + G Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIRISG----FPKKQETFARIS--G 956 Query: 94 VLFQHGALFSSMTVQENISMPIKEHLNLPAD---------------LIEHIVHTKIAIVG 138 Q+ +TV+E S+ L LP + L+E + + K AIVG Sbjct: 957 YCEQNDIHSPQVTVRE--SLIYSAFLRLPKEVSKEEKMMFVDEVMELVE-LDNLKDAIVG 1013 Query: 139 LPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAA 186 LP T LS KR+++A L +P ++F+DEPTSGLD AA Sbjct: 1014 LPGVTG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1055 Score = 28.3 bits (63), Expect = 2.1 Identities = 18/56 (32%), Positives = 28/56 (50%) Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206 +SGG KRV+ + LF+DE ++GLD + K L ++ H +V M Sbjct: 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM 392 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 50.6 bits (121), Expect = 4e-07 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 33/190 (17%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +LS+++L + + ++ IL +NL++ GE+ ++G +G+GKS L + G + +V Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG-----REDYEV 55 Query: 73 LGEHLNLAKGKQNFAFS----AKLGVL--FQHGALFSSMTVQ---ENISMPIKEHLNLP- 122 G + KGK S A G+ FQ+ ++ Q + ++ + Sbjct: 56 TGGTVEF-KGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP 114 Query: 123 ------ADLIEHIVHTKIAIVGLPPE----TANLMPFQLSGGMIKRVSLARALAIDPDLL 172 DL+E KIA++ +P + + N+ SGG KR + + ++P+L Sbjct: 115 LDRFDFQDLMEE----KIALLKMPEDLLTRSVNV---GFSGGEKKRNDILQMAVLEPELC 167 Query: 173 FLDEPTSGLD 182 LDE SGLD Sbjct: 168 ILDESDSGLD 177 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 49.8 bits (120), Expect = 6e-07 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 35/153 (22%) Query: 36 ILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLA------KGKQNFAFS 89 I GE++G++G +G GK+ + + G++ GEV L ++ K + Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD---PELKISYKPQYIKPDYDGTVE 418 Query: 90 AKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPF 149 +L S + I P L L L++ V Sbjct: 419 D---LLRSITDDLGSSYYKSEIIKP----LQLE-RLLDKNVKD----------------- 453 Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 LSGG ++RV++A L+ D DL LDEP++ LD Sbjct: 454 -LSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485 Score = 43.6 bits (104), Expect = 5e-05 Identities = 19/33 (57%), Positives = 24/33 (72%) Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 +LSGG ++RV++A AL D D F DEPTS LD Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244 Score = 28.2 bits (64), Expect = 2.3 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 7/34 (20%) Query: 38 RGEILGVIGSSGTGKSILMRGILGLIPRVSGEVK 71 G++ G++G +G GK+ ++ IL SGE+ Sbjct: 98 EGKVTGILGPNGIGKTTAVK-IL------SGELI 124 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 49.6 bits (118), Expect = 9e-07 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 21/180 (11%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +L V L + +++ +L I+ + G +L + GS+G GK+ L++ I GL+ GE+ Sbjct: 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHT 132 + + K + +L + + +T++EN I H Sbjct: 61 ERQSIK----KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI------------HFSPG 104 Query: 133 KIAIVGLPP--ETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187 + I L +L+ + LS G ++V+L R L LDEP LD ++ Sbjct: 105 AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLL 164 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 48.7 bits (117), Expect = 2e-06 Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 33/195 (16%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILG--LIPRVSGEV 70 +LS N+T++ + + NI++ G G+IG++G GKS M+ ILG L P +G V Sbjct: 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMK-ILGGDLEPS-AGNV 58 Query: 71 KVLGEHLNLAKGKQN-FAF---SAKLGVLFQHGALFSSMTVQENI-SMP--IKEHLNLPA 123 L + L K +Q+ FAF + V+ H L+ ++ I ++P +E A Sbjct: 59 S-LDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVA 117 Query: 124 DLIEHIVHTKIAI----------------VGLPPETANLMPFQLSGGMIKRVSLARALAI 167 DL K A VG+P E + +++ G RV LA+AL Sbjct: 118 DL-----EVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172 Query: 168 DPDLLFLDEPTSGLD 182 +PD+L LDEPT+ LD Sbjct: 173 NPDILLLDEPTNNLD 187 Score = 45.3 bits (108), Expect = 2e-05 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 9 QEEKI----LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64 Q++K+ L V NLT +N + N+NL + GE L +IG +G GK+ L+R ++G + Sbjct: 311 QDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE 370 Query: 65 RVSGEVK 71 SG VK Sbjct: 371 PDSGTVK 377 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 48.3 bits (115), Expect = 2e-06 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 32/182 (17%) Query: 17 RNLTIEL-NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV----SGEVK 71 R++T E N+ + +++ + G+ + ++G +G GK+ L + L+ RV G++ Sbjct: 338 RHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTL----INLLQRVYDPTVGQIL 393 Query: 72 VLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNL---------- 121 + G +N + + + +FQ LF+ +++ENI + +E Sbjct: 394 IDGIDINTVTRE---SLRKSIATVFQDAGLFNR-SIRENIRLG-REGATDEEVYEAAKAA 448 Query: 122 -PADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180 D I + +VG E N +LSGG +R+++ARA+ + +L LDE TS Sbjct: 449 AAHDFILKRSNGYDTLVG---ERGN----RLSGGERQRLAIARAILKNAPILVLDEATSA 501 Query: 181 LD 182 LD Sbjct: 502 LD 503 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 46.7 bits (111), Expect = 5e-06 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 53/243 (21%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88 L++I+L G+++G++G +G+GKS L I G + G+V GE Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE------------- 86 Query: 89 SAKLGVLFQHGALFSSMTVQENISMPI-------KEHLNLPADLIE-----HIVHTKIAI 136 + V+ L +T ENI + KE + +IE ++ + Sbjct: 87 ---VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVK- 142 Query: 137 VGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL 196 + S GM ++ + + ++PD+L +DE S D A K L K+ Sbjct: 143 -------------KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFA---QKCLDKI 186 Query: 197 RH--SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE-GTISDIVDSNDPWIRSYFNRF 253 +++ ++H+L + C ++A I+ G +K+ G + D++ P ++ N F Sbjct: 187 YEFKEQNKTIFFVSHNLGQVRQFCTKIAWIE-GGKLKDYGELDDVL----PKYEAFLNDF 241 Query: 254 TKR 256 K+ Sbjct: 242 KKK 244 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 46.5 bits (110), Expect = 7e-06 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 27/191 (14%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNL-AKGKQNFA 87 L I+L I +G+I+ ++G +G GKS L + GL GE+ + G ++ ++ Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 Query: 88 FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADL-------IEHIVHTKIAIVGLP 140 FSA +F LF + I EH +L I K+ I Sbjct: 418 FSA----IFADFHLFDDL-----IGPDEGEHASLDNAQQYLQRLEIAD----KVKIEDGG 464 Query: 141 PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEF-DKLLIKLRHS 199 T LS G KR++L A D +L DE + DP F ++LL L+ Sbjct: 465 FSTTT----ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520 Query: 200 LGLSVYMITHD 210 G ++ +I+HD Sbjct: 521 -GKTIIIISHD 530 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 46.0 bits (109), Expect = 9e-06 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 17/171 (9%) Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 +LS+ L + + + + +++ L I + G++G GKS L+R I G++ SG + Sbjct: 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59 Query: 73 LGEHLN-LAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVH 131 ++N +AK + + L MTV EN+ E N L I + Sbjct: 60 KNCNINNIAK--------PYCTYIGHNLGLKLEMTVFENLKF-WSEIYNSAETLYAAIHY 110 Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 K+ + + + LS GM K V++AR +A DL LDE + L Sbjct: 111 FKLH------DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 45.4 bits (108), Expect = 1e-05 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Query: 134 IAIVGLPPETANLMPFQ-LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPI 184 + I+G+ TA+ PF LS G + + RAL P LL LDEP GLDP+ Sbjct: 385 LDILGIDKRTAD-APFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435 Score = 45.4 bits (108), Expect = 1e-05 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 148 PF-QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYM 206 F LS G ++ L +AL +PDLL LDEP GLD + ++ +LL L H G+++ + Sbjct: 132 RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL-HQSGITLVL 190 Query: 207 ITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238 + + + + V+ + + G +I Sbjct: 191 VLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 Score = 35.0 bits (81), Expect = 0.020 Identities = 16/45 (35%), Positives = 26/45 (57%) Query: 17 RNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILG 61 N + N+R IL+N++ + GE ++G +G GKS L+ I G Sbjct: 264 NNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 Score = 30.4 bits (69), Expect = 0.55 Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 L + T L++ L +L + G+ +G++G+GKS L R + G +P +SGE Sbjct: 4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE 59 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 44.6 bits (105), Expect = 3e-05 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 8/112 (7%) Query: 145 NLMPF--QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL 202 N+ P+ LSGG +R+++ARAL +P +L LDE TS LD + + +K ++ ++ Sbjct: 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410 Query: 203 SVYMITHDLNNLISTCNRVAVIQKKG-----IMKEGTISDIVDSNDPWIRSY 249 ++ I H + + I +++ V + GT +++ D + Y Sbjct: 1411 TIITIAHRIAS-IKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKY 1461 Score = 44.2 bits (104), Expect = 3e-05 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 18/75 (24%) Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 +LSGG +R+S+ARA+ +P +L LDE TS LD S Y++ Sbjct: 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLD------------------NKSEYLVQK 620 Query: 210 DLNNLISTCNRVAVI 224 +NNL NR+ +I Sbjct: 621 TINNLKGNENRITII 635 Score = 31.5 bits (71), Expect = 0.23 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87 I ++N + G+ +G SG GKS +++ I L G++ + H NL + Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH-NLKDINLKW- 457 Query: 88 FSAKLGVLFQHGALFSSMTVQENI 111 + +K+GV+ Q LFS+ +++ NI Sbjct: 458 WRSKIGVVSQDPLLFSN-SIKNNI 480 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 43.2 bits (102), Expect = 7e-05 Identities = 52/213 (24%), Positives = 99/213 (46%), Gaps = 25/213 (11%) Query: 14 LSVRNLTIE-LNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72 + + N++ ++ ++L NINL + + ++G +G+GKS L ++G P GE+++ Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 Query: 73 LG---EHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENIS----MPIKEHLNLPADL 125 G L+ + +Q A + V+ +++T+ +IS E + L A+L Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRDISEEQVWQALETVQL-AEL 458 Query: 126 IEHI---VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 + ++T + E N LS G + ++LAR L P +L LDE T+ +D Sbjct: 459 ARSLPDGLYTPLG------EQGN----NLSVGQKQLLALARVLVQTPQILILDEATANID 508 Query: 183 PIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLI 215 + + L +R L V I H L+ ++ Sbjct: 509 SGTEQAIQQALAAVREHTTLVV--IAHRLSTIV 539 >gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924 Score = 41.5 bits (98), Expect = 2e-04 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 14/69 (20%) Query: 151 LSGGMIKRVSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFD--KLLIKLRHSL---GL 202 LSGG +R+ LA+ L + L LDEPT+GL FD K L+++ L G Sbjct: 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL------HFDDIKKLLEVLQRLVDQGN 882 Query: 203 SVYMITHDL 211 +V +I H+L Sbjct: 883 TVVVIEHNL 891 Score = 31.5 bits (72), Expect = 0.22 Identities = 12/27 (44%), Positives = 20/27 (74%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSIL 55 L NI+++I R +++ + G SG+GKS L Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38 Score = 31.1 bits (71), Expect = 0.29 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 9/53 (16%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK 81 L NI + I G + G SG+GKS L+ L L LN AK Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTLINDTL---------YPALARRLNGAK 666 Score = 29.2 bits (66), Expect = 1.0 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 137 VGLPPETANLMPFQLSGGMIKRVSLARAL--AIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 VGL T + LSGG +R+ LA + + L LDEP+ GL E L Sbjct: 474 VGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLK 533 Query: 195 KLRHSLGLSVYMITHD 210 +LR LG +V ++ HD Sbjct: 534 RLR-DLGNTVIVVEHD 548 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 38.1 bits (88), Expect = 0.002 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP-----IA 185 + + L SG + R++LA A + PD+L LDE TS LD + Sbjct: 41 ILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL 100 Query: 186 AEEFDKLLIKLRHSLGLSVYMITHDLNNLIS 216 E +LL+ L+ L+V + T+D +L Sbjct: 101 LLEELRLLLLLKSEKNLTVILTTNDEKDLGP 131 Score = 34.7 bits (79), Expect = 0.022 Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 38 RGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVL 73 GE++ ++G G+GK+ L R + + G V + Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 37.5 bits (87), Expect = 0.003 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 10/90 (11%) Query: 137 VGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLF-----LDEPTSGLDPIAAEEFDK 191 +GLP T LSGG +R +LA+ L + L LDEP+ GL P + Sbjct: 463 LGLPYLTPERALATLSGGEQERTALAKHLGAE---LIGITYILDEPSIGLHPQDTHKLIN 519 Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRV 221 ++ KLR G +V ++ HD +IS +R+ Sbjct: 520 VIKKLRDQ-GNTVLLVEHD-EQMISLADRI 547 Score = 37.1 bits (86), Expect = 0.005 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 151 LSGGMIKRVSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207 LSGG I+R+ LA L + P L LDEPT+GL + +L L H G +V +I Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVII 868 Query: 208 THDLNNLISTCNRV 221 H++ +++ + V Sbjct: 869 EHNM-HVVKVADYV 881 Score = 28.3 bits (63), Expect = 1.9 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Query: 14 LSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSIL 55 L VR I + N L NI+++ EI+ + G SG+GKS L Sbjct: 4 LPVRLSGITVRN---LKNISIEFCPREIVLLTGVSGSGKSSL 42 Score = 28.3 bits (63), Expect = 2.0 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 6 IPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60 IP + L LT+ + L ++ + + G + V G SG+GKS L+ L Sbjct: 590 IPEKRTNSLG--TLTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTL 642 Score = 27.9 bits (62), Expect = 2.8 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 169 PDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210 P L LDE + LD L L SLG SV I HD Sbjct: 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLV-SLGHSVIYIDHD 1761 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 34.3 bits (80), Expect = 0.029 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 14/71 (19%) Query: 11 EKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV 70 K L ++ NN L N++++I G+ V G SG+GKS L+ L Sbjct: 612 GKFLKLKGARE--NN---LKNVDVEIPLGKFTCVTGVSGSGKSTLINETL---------Y 657 Query: 71 KVLGEHLNLAK 81 K L LN AK Sbjct: 658 KALARKLNGAK 668 Score = 32.0 bits (74), Expect = 0.17 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 14/69 (20%) Query: 151 LSGGMIKRVSLARALAIDPD---LLFLDEPTSGLDPIAAEEFD--KLLIKLRHSL---GL 202 LSGG +RV LA+ L+ L LDEPT+GL F+ + L+++ H L G Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL------HFEDIRKLLEVLHRLVDKGN 884 Query: 203 SVYMITHDL 211 +V +I H+L Sbjct: 885 TVVVIEHNL 893 Score = 28.1 bits (64), Expect = 2.1 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 10/41 (24%) Query: 24 NNRII--------LNNINLDILRGEILGVI-GSSGTGKSIL 55 ++II L NI+LDI R + L V G SG+GKS L Sbjct: 3 MDKIIIRGAREHNLKNIDLDIPRDK-LVVFTGLSGSGKSSL 42 >gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed. Length = 352 Score = 31.1 bits (71), Expect = 0.27 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Query: 19 LTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEV-KVLGEHL 77 L I + I L + L+ LR +I V G SG GKS L I LIP V V KV G+ Sbjct: 153 LFISVETGIGLEAL-LEQLRNKITVVAGPSGVGKSSL---INRLIPDVELRVGKVSGK-- 206 Query: 78 NLAKGK 83 L +G+ Sbjct: 207 -LGRGR 211 >gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 Score = 30.8 bits (69), Expect = 0.33 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%) Query: 155 MIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKL----RHSLGLSVYMITHD 210 +I R++LA ++ ++ LDEPT+ LD E L+++ + +ITHD Sbjct: 1210 LIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHD 1269 Query: 211 --LNNLISTCNRVAVIQKKGIMKEGTISDIV 239 L+ V + ++ S+IV Sbjct: 1270 EDFVELLGRSEYVEKFYRLKKNEDQ-CSEIV 1299 >gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional. Length = 327 Score = 30.7 bits (70), Expect = 0.34 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 41 ILGVIGSSGTGKSILMRGI 59 +LGV G SG GK+ +RG+ Sbjct: 10 LLGVAGDSGCGKTTFLRGL 28 >gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated. Length = 434 Score = 30.2 bits (68), Expect = 0.49 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 7/49 (14%) Query: 29 LNNIN--LDILRGEILGVIGSSGTGKSILMRGILGLIPRVS-GEVKVLG 74 +N IN L I +G+ +G++ SG GKS+L LG+I R + +V V+G Sbjct: 143 VNAINGLLTIGKGQRVGLMAGSGVGKSVL----LGMITRYTQADVVVVG 187 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 30.1 bits (68), Expect = 0.64 Identities = 12/41 (29%), Positives = 23/41 (56%) Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIP 64 N +++ +++ ++ G L + G +G GKS L R + L P Sbjct: 463 NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP 503 Score = 27.0 bits (60), Expect = 4.6 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209 LSGG +R+++AR P LDE TS + + + + +L G++++ ++H Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYRLCREFGITLFSVSH 637 >gnl|CDD|185447 PTZ00103, PTZ00103, 60S ribosomal protein L3; Provisional. Length = 390 Score = 29.7 bits (67), Expect = 0.84 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 123 ADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIK-RVSLARAL 165 +I I HT+ + + L + A++M Q++GG + +V A++L Sbjct: 154 CSVIRVIAHTQPSKLPLGQKKAHVMEIQVNGGSVAEKVDFAKSL 197 >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional. Length = 1047 Score = 29.4 bits (66), Expect = 0.87 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 11/51 (21%) Query: 151 LSGGMIKRVSLARALAIDP--------DLLFLDEPTSGLDPIAAEEFDKLL 193 LSGG VSLA ALA+ D LFLDE LD +E D L Sbjct: 950 LSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLD---SETLDTAL 997 >gnl|CDD|179196 PRK00979, PRK00979, tetrahydromethanopterin S-methyltransferase subunit H; Provisional. Length = 308 Score = 28.8 bits (65), Expect = 1.5 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%) Query: 7 PSQEEKILSVRNLT-IELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGL--- 62 S E +I + + T + L +R I N+IN I EI + S +I +L Sbjct: 104 TSPEARIAAAKYATELGLADRAIYNSINPSIEEEEI-EALKESDIKAAI----VLAFDPM 158 Query: 63 IPRVSGEVKVLGE 75 P V G +K+L E Sbjct: 159 DPSVEGRLKMLEE 171 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 28.3 bits (63), Expect = 1.8 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 151 LSGGMIKRVSLARALAI------DPDLLFLDEPTSGLDPIAAEEF-DKLLIKLRHSLGL- 202 LSGG V+ A +A+ D LL +DEPT+ LD D + L+ S + Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861 Query: 203 SVYMITHDLNNLISTCNRVAVIQKKG 228 V MI+H L+S + ++K Sbjct: 862 QVIMISHH-RELLSVADVAYEVKKSS 886 >gnl|CDD|178819 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed. Length = 423 Score = 28.6 bits (65), Expect = 1.8 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 7/38 (18%) Query: 184 IAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRV 221 + +E ++ L L S + +I +STCNR Sbjct: 23 FSEDELEEALESLLASPSVLEAVI-------LSTCNRT 53 >gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated. Length = 442 Score = 28.0 bits (63), Expect = 2.3 Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 38 RGEILGVIGSSGTGKSILM 56 RG+ +G+ SG GKS+L+ Sbjct: 157 RGQRMGIFAGSGVGKSVLL 175 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 28.0 bits (63), Expect = 2.3 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%) Query: 29 LNNINLDILR-----GEILGVIGSSGTGKSILMRGILG 61 L+ LD+L G+ + ++GSSG GKS L+ +LG Sbjct: 180 LDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLG 217 >gnl|CDD|163292 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 411 Score = 28.2 bits (64), Expect = 2.3 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 15/54 (27%) Query: 38 RGEILGVIGSSGTGKSILM----RG------ILGLIPRVSGEVK-----VLGEH 76 RG+ +G+ SG GKS L+ R ++GLI EVK +LGE Sbjct: 136 RGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGREVKEFIEDILGEE 189 >gnl|CDD|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed. Length = 1107 Score = 27.5 bits (61), Expect = 3.5 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 14/83 (16%) Query: 57 RGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGV--LFQHGALFSSMTVQENISMP 114 +G++ + P GE++ L L + K++ A +F + + Sbjct: 118 KGLIAISPGKDGEIEQL-----LLEDKESQAEEVARAYQNMFGNFYMSLQH-------HA 165 Query: 115 IKEHLNLPADLIEHIVHTKIAIV 137 I++ L L L E I +V Sbjct: 166 IQDELLLQEKLPEFSNRVNIPVV 188 >gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated. Length = 451 Score = 27.4 bits (61), Expect = 3.9 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 14/59 (23%) Query: 32 IN--LDILRGEILGVIGSSGTGKSILMRG-----------ILGLIPRVSGEVKVLGEHL 77 IN L + RG+ LG+ +G GKS+L+ G ++GLI EVK EH+ Sbjct: 159 INGLLTVGRGQRLGLFAGTGVGKSVLL-GMMTRFTEADIIVVGLIGERGREVKEFIEHI 216 >gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional. Length = 880 Score = 27.3 bits (61), Expect = 4.1 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 13/69 (18%) Query: 151 LSGGMIKRVSLARALAI------DPDLLFLDEPTSGLDPIAAEEFDKLLIKL--RHSLGL 202 LSGG + LA LA+ + LL LDEPT LD EE + L+ + R+ + Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLD----EERRRKLVDIMERYLRKI 844 Query: 203 S-VYMITHD 210 V +++HD Sbjct: 845 PQVIIVSHD 853 >gnl|CDD|184312 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional. Length = 637 Score = 27.3 bits (61), Expect = 4.3 Identities = 11/21 (52%), Positives = 16/21 (76%) Query: 45 IGSSGTGKSILMRGILGLIPR 65 IGS GTGKS+L + + L+P+ Sbjct: 56 IGSPGTGKSMLAKAMAELLPK 76 >gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional. Length = 506 Score = 27.3 bits (60), Expect = 4.3 Identities = 15/31 (48%), Positives = 20/31 (64%) Query: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGE 69 G L +IG GTGK++L I GL+P +S E Sbjct: 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNE 240 >gnl|CDD|184036 PRK13407, bchI, magnesium chelatase subunit I; Provisional. Length = 334 Score = 27.1 bits (60), Expect = 4.4 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Query: 22 ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66 E+ ++L I+ I G +L V G GTGKS +R + L+P + Sbjct: 15 EMKQAMVLTAIDPGI--GGVL-VFGDRGTGKSTAVRALAALLPLI 56 >gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated. Length = 455 Score = 27.1 bits (60), Expect = 5.1 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%) Query: 31 NINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS-GEVKVLG 74 N L + RG+ +G+ SG GKS+L LG++ R + +V V+G Sbjct: 167 NALLTVGRGQRMGLFAGSGVGKSVL----LGMMARYTQADVIVVG 207 >gnl|CDD|163070 TIGR02915, PEP_resp_reg, putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). Length = 445 Score = 27.0 bits (60), Expect = 5.4 Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 44 VIGSSGTGKSILMRGILGLIPRVSG 68 ++G SGTGK +L R + L R Sbjct: 167 LLGESGTGKEVLARALHQLSDRKDK 191 >gnl|CDD|181369 PRK08304, PRK08304, stage V sporulation protein AD; Validated. Length = 337 Score = 26.7 bits (60), Expect = 5.5 Identities = 7/16 (43%), Positives = 10/16 (62%) Query: 99 GALFSSMTVQENISMP 114 GAL S + Q+ S+P Sbjct: 310 GALLSPTSSQQGESIP 325 >gnl|CDD|184273 PRK13721, PRK13721, conjugal transfer ATP-binding protein TraC; Provisional. Length = 844 Score = 27.0 bits (60), Expect = 5.6 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 6/32 (18%) Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGIL 60 +NN N ++ V G+SG GK+ L++ ++ Sbjct: 445 MNNTNYNM------AVCGTSGAGKTGLIQPLI 470 >gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). Length = 245 Score = 26.6 bits (59), Expect = 6.0 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 35 DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAK 81 + L+ I G SG GKS L+ + P V +V + L L K Sbjct: 116 EALQNRISVFAGQSGVGKSSLINALD---PSVKQQVNDISSKLGLGK 159 >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional. Length = 880 Score = 26.9 bits (60), Expect = 6.0 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 12/49 (24%) Query: 146 LMPFQLSGG------MIKRVSLARALA--IDPDL----LFLDEPTSGLD 182 L P QLSGG + R ++ R LA I+ D L LDEPT LD Sbjct: 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLD 825 >gnl|CDD|163433 TIGR03721, exospore_TM, BclB C-terminal domain. This domain occurs as the C-terminal region in a number of proteins that have extensive collagen-like triple helix repeat regions. Member domains are predicted by TmHMM to have four or five transmembrane helices. Members are found mostly in the Firmicutes, but also in Acanthamoeba polyphaga mimivirus. Members include spore surface glycoprotein BclB from Bacillus anthracis, a protein of the exosporium. The exosporium is an additional outermost spore layer, lacking in B. subtilis and most other spore formers, consisting of a basal layer and, above it, a nap of fine filaments. Length = 165 Score = 26.8 bits (59), Expect = 6.3 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%) Query: 70 VKVLGEHLNLAKGKQNFAFSA-KLGVLFQHGALFSSMTVQENISMPIKEHLNL-----PA 123 + ++G ++LA G N+AFS + G++ A FS+ + P+ L P+ Sbjct: 35 LSLVGGTIDLAGGLTNYAFSMPRDGIITSLAAYFSATAALALLG-PVTITAQLYIAPAPS 93 Query: 124 DLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDP 183 ++ + + + PP T + + G+I +++ A D LL + SGL P Sbjct: 94 NVFTPVPGAPVTL--TPPITGPIAVGSTASGIITGLNIP-VTAGDRLLLVVSATASGLSP 150 Query: 184 IAA 186 IA Sbjct: 151 IAT 153 >gnl|CDD|183875 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed. Length = 443 Score = 26.7 bits (60), Expect = 6.4 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%) Query: 174 LDEPTSGLDPIAAEEFDKLLI 194 L+E + P A FDK+L+ Sbjct: 354 LEEDFTD-QPWALGGFDKVLL 373 >gnl|CDD|131085 TIGR02030, BchI-ChlI, magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Length = 337 Score = 26.8 bits (59), Expect = 6.4 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 22 ELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV 66 E+ ++LN I+ I G ++ V+G GTGKS +R + L+P + Sbjct: 11 EMKLALLLNVIDPKI--GGVM-VMGDRGTGKSTAVRALAALLPEI 52 >gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. Length = 440 Score = 26.6 bits (59), Expect = 6.6 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 5/38 (13%) Query: 38 RGEILGVIGSSGTGKSILMRGILGLIPRVS-GEVKVLG 74 +G+ +G+ SG GKS L+ G+I R + +V V+ Sbjct: 162 KGQRIGIFAGSGVGKSTLL----GMIARNTEADVNVIA 195 >gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated. Length = 444 Score = 26.6 bits (59), Expect = 7.4 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 17/62 (27%) Query: 32 IN--LDILRGEILGVIGSSGTGKSILM----RG------ILGLIPRVSGEVK-----VLG 74 IN L + +G+ +G+ SG GKS+L+ RG ++GL+ EVK +LG Sbjct: 153 INAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEILG 212 Query: 75 EH 76 E Sbjct: 213 EE 214 >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1042 Score = 26.1 bits (57), Expect = 9.5 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 13/53 (24%) Query: 151 LSGGMIKRVSLARALAIDP----------DLLFLDEPTSGLDPIAAEEFDKLL 193 LSGG SL+ ALA+ D LF+DE LD + D+ + Sbjct: 951 LSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLD---EDSLDRAI 1000 >gnl|CDD|184869 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional. Length = 659 Score = 25.9 bits (57), Expect = 9.6 Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 170 DLLFLDEPTSGLDPIAAEEFDKLL 193 D+ F+ T+GL PI AE +K L Sbjct: 451 DMDFMAPSTTGLRPIGAENIEKSL 474 >gnl|CDD|131892 TIGR02845, spore_V_AD, stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. Length = 327 Score = 26.2 bits (58), Expect = 9.9 Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 99 GALFSSMTVQENISMPIKEH 118 GAL S T Q+ S+P H Sbjct: 303 GALLSPTTFQQGESIPGIAH 322 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.139 0.391 Gapped Lambda K H 0.267 0.0686 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,292,400 Number of extensions: 287366 Number of successful extensions: 1332 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1083 Number of HSP's successfully gapped: 375 Length of query: 257 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 166 Effective length of database: 4,028,145 Effective search space: 668672070 Effective search space used: 668672070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.4 bits)