BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780139|ref|YP_003064552.1| putative ATP-binding component
of ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
(257 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 516 bits (1328), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60
MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL
Sbjct: 1 MQLNNIPSQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGIL 60
Query: 61 GLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120
GLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN
Sbjct: 61 GLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN 120
Query: 121 LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG
Sbjct: 121 LPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSG 180
Query: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD
Sbjct: 181 LDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
Query: 241 SNDPWIRSYFNRFTKRI 257
SNDPWIRSYFNRFTKRI
Sbjct: 241 SNDPWIRSYFNRFTKRI 257
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 105 bits (263), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 21/232 (9%)
Query: 3 LNNIPSQEEKILSVRNLTIELN------NRIILNNINLDILRGEILGVIGSSGTGKSILM 56
+ NI ++ ++L ++++ + N ++L+ +N ++ GEI+G++G SG+GKS L+
Sbjct: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
Query: 57 RGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK 116
R I GL+ SG+V L KGK+ + V+FQ ALF +TV EN+ + +K
Sbjct: 61 RIIAGLVSPSSGQV--------LFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLK 112
Query: 117 EHLNLPADLIEHIVHTKIAIVGLPP-ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLD 175
+ + + I ++GL E+A+ ++SGGM++RV ARA + P LL +D
Sbjct: 113 AK-GIDKEERRKRALSAIDLIGLDGFESAHTT--EISGGMLQRVGFARAFVVFPSLLLMD 169
Query: 176 EPTSGLDPIAAEEFDKLLIKLRHSLGL---SVYMITHDLNNLISTCNRVAVI 224
EP S LD + AE LI L L S+ M+TH++ + C+RV V
Sbjct: 170 EPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 102 bits (253), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 131/246 (53%), Gaps = 25/246 (10%)
Query: 8 SQEEKILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVS 67
+ ++ +LS +LT + N+ ++ ++L + GEI+G++G +G GK+ + GLI S
Sbjct: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79
Query: 68 GEVKVLGEHLNLAKGKQNFAFSAKLGVLF--QHGALFSSMTVQENISMPI--------KE 117
G +K+ G + K A+LG+ + Q ++F +TV+ENI + K
Sbjct: 80 GSIKIDGNDIT----KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135
Query: 118 HLNLPADLIEHIVHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEP 177
H L + L E + TK V L P LSGG +R+ +AR+L P + LDEP
Sbjct: 136 HEKLDSLLKEFNI-TKWRHV--------LAPL-LSGGQRRRLEIARSLVSFPSYILLDEP 185
Query: 178 TSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISD 237
+G+DP+A + +LI+ S G+ + + H+++ +++ +R +I G++ GT+ +
Sbjct: 186 FAGVDPVAISDI-HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
Query: 238 IVDSND 243
I+D+ D
Sbjct: 245 IIDNQD 250
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 101 bits (252), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 17/217 (7%)
Query: 33 NLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQN-FAFSAK 91
NL++ +GEIL ++G SG GKS L+R I GL P V GEV V + KG N +A A
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV-----DTDKGFVNPYAADAN 103
Query: 92 L---------GVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPE 142
+ ++FQ AL TV N+ + + E L++P + V + IV L +
Sbjct: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVNLT-K 161
Query: 143 TANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL 202
A+ LSGGM +RV ARA A +L +DEP S LDP+ L+ L+ L
Sbjct: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
Query: 203 SVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIV 239
++ ++HD+N NR+A+++ I++ GT +I+
Sbjct: 222 TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 85.1 bits (209), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAF 88
L +INL++LRGE + + G SG+GKS L+R I + +GE+ + G LN +
Sbjct: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN-DDIRNIHEV 91
Query: 89 SAKLGVLFQHGALFSSMTVQENISM-PIKEHLNLPADLIEHIVH--TKIAIVGLPPETAN 145
+G++FQH LFS+++V EN ++ PI D E +H K+ I + ++
Sbjct: 92 RRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA----DKSH 147
Query: 146 LMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVY 205
LSGG +R ++AR+L + P ++ DEPTS LDP +E ++I+L G+++
Sbjct: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMV 206
Query: 206 MITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYFN 251
+TH++ +RV M +G IV+ N P +FN
Sbjct: 207 CVTHEMGFARQVADRVV------FMDQG---QIVEQNSP--EEFFN 241
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 81.3 bits (199), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 29 LNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRV-----SGEVKVLGEHLNLAKGK 83
L +INL I + + +IG SG GKS +R + + + +GE+ + G+++
Sbjct: 22 LFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNI-YQSSV 80
Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHL--NLPADLIEHIVHTKIAIVGLPP 141
A++G++FQ F ++ +N++ + H N AD I+ IV + L
Sbjct: 81 DVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKAD-IDQIVEMSLKKASLFN 138
Query: 142 ETANLMPFQ---LSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198
E + + LSGG +RV +ARALA++P+++ +DEP S LDPIA ++L+ +LR
Sbjct: 139 EVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRE 198
Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKE 232
S L++ ++TH + R A+ +++E
Sbjct: 199 S--LTIVIVTHSMQQAARVSQRAAMFHMGHLVEE 230
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 81.3 bits (199), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 9/204 (4%)
Query: 31 NINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGE-HLNLAKGKQNFAFS 89
+ + + E + ++G SG GKS L+ + G G + + G+ H + K+
Sbjct: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKR----- 71
Query: 90 AKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLMPF 149
L +LFQ LFS +TV +NI++ I +L L D +H ++ + N P
Sbjct: 72 -PLSILFQENNLFSHLTVWQNIALGIAPNLRL--DHYQHAQVKQMLEKVFLEDFFNRFPS 128
Query: 150 QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITH 209
Q+SGG +RV+LAR L +L LDEP + DP E LL ++ L++ MI+H
Sbjct: 129 QMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISH 188
Query: 210 DLNNLISTCNRVAVIQKKGIMKEG 233
+L + + R VI I+ +G
Sbjct: 189 NLEDSMQIATRFIVIAGGQIVYDG 212
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 75.1 bits (183), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 28/221 (12%)
Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGL--IPRVSGEVKVLGEHLN-LAKGKQ 84
+L N++L + +GEI+ ++ SGTGKS ++ I GL +P G V + + N L+ K+
Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD-QGNVIIANQLCNKLSDDKK 82
Query: 85 NFAFSAKLGVLFQHGALFSSMTVQENISMPI-------KEHLNLPADLIEHIVHTKIAIV 137
+F +K+G ++Q L +V ENI P K DL+ ++ +
Sbjct: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMS----- 137
Query: 138 GLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR 197
+ AN +SGG +RV++ RA+A P ++ DEPT LD A++ +L L
Sbjct: 138 ----QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
Query: 198 HSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
GL+ + TH+ ++L S +R I ++G I+D+
Sbjct: 194 VRSGLAALIATHN-HDLASQMDRQITI------RDGMIADL 227
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 72.4 bits (176), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 27/245 (11%)
Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
++S+ N + N IL +IN I EI+ +IG +G+GKS + + I G+I G VK
Sbjct: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK- 68
Query: 73 LGEHLNLAKG--KQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIV 130
H L G Q L + +L MT +SMP D+++ +
Sbjct: 69 --RHPQLIVGYVPQKVTIENTLPL-----SLMRFMT----LSMPSSRD-----DVLQ--I 110
Query: 131 HTKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFD 190
++ ++G N LSGG +R LA+AL P+LL LDEP G+D
Sbjct: 111 LDRVNLIG----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
Query: 191 KLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIRSYF 250
+L+ +R S G + +I+H+L+ ++++ + V + + I +G I D N +IR +
Sbjct: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR-ICYQGPPQTIKD-NAEYIRLFG 224
Query: 251 NRFTK 255
R T+
Sbjct: 225 TRATE 229
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 67.8 bits (164), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 10/223 (4%)
Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
N L ++NL I I +IG +G GKS L + I+GLIP G + + + + A
Sbjct: 23 NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKA 82
Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLN---LPADLIEHIVHTKIAIVGLP 140
A+ + + + V++ + M +H+N + ++ IV + VG+
Sbjct: 83 DLIAYIPQTESIDWTFPIL----VEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMS 138
Query: 141 PETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL 200
+ +LS G KRV LARALA ++ +DEP + +D E LL L +
Sbjct: 139 SMRQRQIG-ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE- 196
Query: 201 GLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
+ + + TH++N++ S C+R + KK ++ G SDI + ++
Sbjct: 197 DIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDN 238
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 60.1 bits (144), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 109/236 (46%), Gaps = 32/236 (13%)
Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
+L +T + ++R+++ + +L I GE +G++G +G GK+ L++ + G I G +
Sbjct: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI-T 342
Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIK-EHLNLPADLIEHIVH 131
LG +L +A K + +L S +T S+ ++ E ++ + + + H
Sbjct: 343 LGTNLKIA------TIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFH 396
Query: 132 TKIAIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDK 191
P+ A+ + LSGG R +AR LA + L +DEPT+ LD + ++
Sbjct: 397 ---------PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
Query: 192 LLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSNDPWIR 247
+ +L+ ++ +++HD + L T Q +I D N WI+
Sbjct: 448 TITQLQG----TILIVSHDRDFLDRTVTSTIAAQ-----------NIEDPNGYWIK 488
Score = 45.8 bits (107), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87
+L ++ L I E + ++G +G+GKS L++ G+ SG V +
Sbjct: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS------------- 66
Query: 88 FSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANLM 147
S++LG L Q+ L T+ + I IK+ + P ++ +++
Sbjct: 67 -SSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAP--------YSPYSLLKKFNLREQDR 117
Query: 148 PFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMI 207
LS G + V+L + L PD+L LDEPT+ LD ++ L+K+ +L +
Sbjct: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL----IFV 173
Query: 208 THDLNNLISTCNRVAVIQKKGIM 230
+HD + T + V +G +
Sbjct: 174 SHD-RRFLETLSTTTVWLDRGCL 195
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 53.1 bits (126), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 30/203 (14%)
Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
++ + ++ N+R++++N++ + G I+GVIG +G GK+ L R + G SG + V
Sbjct: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIE---HI 129
GE + L+ Q+ +L + TV E+IS D+++ H
Sbjct: 377 -GETVCLSYVDQS------------RDSLEAEKTVWEDISG--------GDDIVKLNGHE 415
Query: 130 VHTKIAIVGLPPETANLMPF--QLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAE 187
++++ + + LSGG RV LA+ L +++ LDEPT+ LD E
Sbjct: 416 INSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD---TE 472
Query: 188 EFDKLLIKLRHSLGLSVYMITHD 210
L L + G +V +I+HD
Sbjct: 473 TLSALEDALENFAGCAV-IISHD 494
Score = 50.8 bits (120), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 111/252 (44%), Gaps = 46/252 (18%)
Query: 13 ILSVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKV 72
I + L+ ++ +L++INL +G++G +G GKS ++R + G+ +GE
Sbjct: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW- 64
Query: 73 LGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENI--------------------- 111
LA G F+ +G L Q L S TV+ENI
Sbjct: 65 ------LATG-----FT--VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111
Query: 112 SMPIKEHLNLPADLIEHI------VHTKIAIVGLPPETANLMPFQLSGGMIKRVSLARAL 165
S +E + D+I+ ++AI L L LSGG +RV+L + L
Sbjct: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171
Query: 166 AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQ 225
PDLL LDEPT+ LD AE + LR G +V M+THD L + N + +
Sbjct: 172 LSSPDLLLLDEPTNHLD---AETIAWMEKYLREYSG-AVLMVTHDRYFLDNVTNWILEVD 227
Query: 226 K-KGIMKEGTIS 236
+ KGI +G S
Sbjct: 228 RGKGIPYQGNYS 239
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 52.4 bits (124), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 14/216 (6%)
Query: 24 NNRIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGK 83
+ R IL N+N + GE + ++G SG GK+ + IL SG V++ G L L +
Sbjct: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360
Query: 84 QNFAFSAKLGVLFQHGALFSSMTVQENISM----PIKEHLNLPADLIEHIVHTKIAIVGL 139
+ F A + QH + ++ +V +NI++ ++ + A L + H I +
Sbjct: 361 EIRRFIAWVP---QHPIMIAA-SVYDNIAIGCPHATRKEIQNAAMLAQ--AHEFIGCLEN 414
Query: 140 PPETA-NLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198
+T LS G I+R+++ARA+ D +L LDE S LD ++ K+L + R
Sbjct: 415 GYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRR 474
Query: 199 SLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGT 234
G + +H L+ I + V V+ + I+++G
Sbjct: 475 --GRTTIFASHRLSA-IQDADMVFVLHDQVIVEKGV 507
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 51.6 bits (122), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 3 LNNIPSQEEKI-LSVRNLTIELNN---------RIILNNINLDILRGEILGVIGSSGTGK 52
LN+ S++E I + + N TI N R+I N++ I G + G SG GK
Sbjct: 312 LNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGK 371
Query: 53 SILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF--AFSAKLGVLFQHGALFSSMTVQEN 110
S + +LGL+ G + ++ ++F FSA++G L QH +LF +++ EN
Sbjct: 372 SNFLLCMLGLLTLEKGTISFGDRQIS-----RDFIEKFSAQIGYLSQHCSLF-PISITEN 425
Query: 111 ISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL--------MPFQLSGGMIKRVSLA 162
I + ++ HI IVG + +L ++ +++++ L+
Sbjct: 426 IILSHDQNS-------LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS 478
Query: 163 RALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210
R +A +P +L +DEP LD A F LL + + + ++ +I+HD
Sbjct: 479 RIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHD 525
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 50.1 bits (118), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 21/197 (10%)
Query: 28 ILNNINLDILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFA 87
+L+ INL G++ ++G SG+GKS ++ ++ + SG +++ G ++ ++
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI------RDIT 421
Query: 88 FSA---KLGVLFQHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIA---IVGLPP 141
FS+ ++ + Q LFS+ TV+ NI I + ++IE I + A I+ LP
Sbjct: 422 FSSLRERISYVGQDVFLFSN-TVRYNI--LIGRPMATEEEMIE-IAKSANAHDFIMSLPQ 477
Query: 142 ETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRH 198
+ LSGG +R+++ARA+ D +L LDE TS LD + L +L
Sbjct: 478 GYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQ 537
Query: 199 SLGLSVYMITHDLNNLI 215
G + +I H ++ +I
Sbjct: 538 --GRTTIVIAHRISTII 552
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 48.5 bits (114), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 12 KILSVRNLTIELNN--------RIILNNINLDILRGEILGVIGSSGTGKSILMRGILGLI 63
K L ++N I NN I I+ +I + +IG SG GKS + + + L
Sbjct: 348 KDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLY 407
Query: 64 PRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGALFSSMTVQENISM--PIKEHLNL 121
G + + G+ + K + +G++ Q LF+ T++ NI P L
Sbjct: 408 DIKGGIITIDGQDI---KKITKESLRQTIGIIPQDTILFND-TLRYNILYGNPNASDQEL 463
Query: 122 PADLIEHIVHTKIAIVGLPPETANLMP---FQLSGGMIKRVSLARALAIDPDLLFLDEPT 178
A + + K I+ LP ++ +LSGG +RVS+ARA+ +P ++ DE T
Sbjct: 464 CAAV--EVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEAT 521
Query: 179 SGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDLNNLISTCNRVAVIQKKGIMKEGTISDI 238
S LD I L L S + +I H L+ I+ + + V + +++ G+ ++
Sbjct: 522 SSLDIITERHIQTALATL--SKNRTTLVIAHRLST-ITDADNIIVFDQGTVVESGSHENL 578
Query: 239 VD 240
+
Sbjct: 579 IS 580
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 35.8 bits (81), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 102 FSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAI---VGLPPETANLMPFQLSGGMIKR 158
F ++ + +SM + E L+ A + +H K+ VGL LSGG +R
Sbjct: 796 FKDKSIADVLSMTVDESLDFFAAI--PTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQR 853
Query: 159 VSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL---GLSVYMITHDL 211
V LA+ L A L LDEPT+GL + KLL + H+L G S+ +I H+L
Sbjct: 854 VKLAKELSKQATGNTLYILDEPTTGLH---YHDIAKLL-NILHTLVDRGNSIIVIEHNL 908
Score = 26.2 bits (56), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 16 VRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSIL 55
++N++I L NI++++ R +++ + G SG+GKS L
Sbjct: 4 IKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 27.3 bits (59), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLD----PIAAEEFDKLLIKLRHSLGLSVYM 206
SGG K + + ++P L LDE SGLD IAA+ + L S S +
Sbjct: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL-----RSQDRSFLI 202
Query: 207 ITH--DLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
ITH L N I + + V+ I+K G S +D
Sbjct: 203 ITHYQRLLNYIKP-DTIHVLHNGKIIKTGDYSIALD 237
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 25.4 bits (54), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
E LMP I R S+ A+ + PDL F++ G+D
Sbjct: 480 EARWLMPMLCRSSGINRQSIG-AIRVQPDLTFVEVSADGVD 519
>gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 623
Score = 23.9 bits (50), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 15 SVRNLTIELNNRIILNNINLDILRGEILGVIGSSGTGK 52
S+++ + +L N + + + D L E+L +GS G K
Sbjct: 30 SIKDYSRQLTNIFLKDKVFFDGLEQELLASLGSMGQEK 67
>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
[Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 23.5 bits (49), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 25 NRIILNNINLDILRGEILGVIGSSGTGKSILMR 57
R IL+ NLD+++GE+ G SI+M+
Sbjct: 108 QREILSQENLDVIQGEVAGFNTEKNIISSIVMQ 140
>gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 518
Score = 23.1 bits (48), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 163 RALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR-HSLGLSVYMITHDLNNLISTCNRV 221
+ L +D + LD +S + P+ L KLR + L S + D+NNL + +
Sbjct: 368 KKLNLDFYMFPLDYSSSDISPLLG-----LSEKLRLYPLLFSDALFHQDINNLENVSAIL 422
Query: 222 AVIQKKGIMKEGT 234
+I G M GT
Sbjct: 423 NIIDDSGFMGSGT 435
>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 509
Score = 23.1 bits (48), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 33/187 (17%)
Query: 31 NINLDILRGEILGVIGSSGTGKSILM----RGILGLIPR-------VSGEVKVLGEHLNL 79
+IN+D + ++ G SGTGK+ L R ++G + E + +NL
Sbjct: 210 SINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINL 269
Query: 80 AKGKQN--FAFSAKLGVLFQHGAL-------FSSMTVQENI--SMPIKE-HLNLPADLIE 127
+K + F+ S + G + ++ + F +V EN + P+ H + P + +
Sbjct: 270 SKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGK 329
Query: 128 HIVHT---KIAIVGLPPETANLMP----FQLSGGMIKRVSLARALAIDPDLLF---LDEP 177
H H G+ P A L P + G +V+ + P+ F P
Sbjct: 330 HPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAP 389
Query: 178 TSGLDPI 184
DP+
Sbjct: 390 FMPRDPV 396
>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
psy62]
Length = 554
Score = 22.7 bits (47), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 12/64 (18%)
Query: 21 IELNNRIILNNINLDILRGEILGVI-GSSGTGKSILM---------RGILGLIPRVSGEV 70
+ + N +++ ++++D G L ++ G +G+GKSIL+ RG GL+ R + +
Sbjct: 4 LSIYNIVLIESLDIDFSAG--LSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEKG 61
Query: 71 KVLG 74
+V+
Sbjct: 62 QVVA 65
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 22.3 bits (46), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 18 NLTIELNNRIILNNINLDILRGEILGVIGSSGTGKSILMRG-ILGLIPRVS 67
+L I L I I D+ R L + G++G+GKS+ + IL L+ R++
Sbjct: 433 DLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 22.3 bits (46), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 34 LDILRGEILGVIGSSGTGKSILMRGILG 61
+D++ G+ L + G GTGKS + I+
Sbjct: 414 IDVINGKNLIIEGPPGTGKSQTITNIIA 441
>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 438
Score = 22.3 bits (46), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 36 ILRGEILGVIGSSGTGKSILM 56
+ G+ +GV SG GKS L+
Sbjct: 158 LCHGQRIGVFAGSGIGKSTLL 178
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.139 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,111
Number of Sequences: 1233
Number of extensions: 7272
Number of successful extensions: 85
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 39
length of query: 257
length of database: 328,796
effective HSP length: 72
effective length of query: 185
effective length of database: 240,020
effective search space: 44403700
effective search space used: 44403700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)