HHsearch alignment for GI: 254780140 and conserved domain: pfam02470
>pfam02470 MCE mce related protein. This family of proteins contains the mce (mammalian cell entry) proteins from Mycobacterium tuberculosis. The archetype (Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage. This family contains proteins of unknown function from other bacteria.
Probab=99.46 E-value=6.1e-13 Score=108.46 Aligned_cols=79 Identities=30% Similarity=0.442 Sum_probs=72.2
Q ss_pred CEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCC-CCCCCCEEEEEECCCCHHHHHHCC
Q ss_conf 6189999971875676689807890074337988886488860799999974897-246884699974232102332101
Q gi|254780140|r 37 PMAEVIIRIPGSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDT-PLYPSTTATIRTQGLAGITYIELS 115 (452)
Q Consensus 37 ~~~~~~~~f~~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~-~i~~~~~~~i~~~~l~g~~~i~~~ 115 (452)
T Consensus 1 ~~~~i~~~f~-~~~Gl~~gs~V~~~Gv~VG~V~~i~~~~~~-~~v~v~~~i~~~~~~i~~~s~a~i~~~~llG~~~i~i~ 78 (80)
T pfam02470 1 RGYTVTAYFD-DAGGLEVGAPVRYRGVPVGRVTSIDLDPDG-GGVRVTLRIDPDVVVIPKDSRAGIRSLGLLGEKYIALD 78 (80)
T ss_pred CCEEEEEEEC-CCCCCCCCCEEEECCEEEEEEEEEEECCCC-CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEE
T ss_conf 9859999987-878988989899999899999899982899-88999999958976979995999986983532689985
Q ss_pred CC
Q ss_conf 46
Q gi|254780140|r 116 TL 117 (452)
Q Consensus 116 ~~ 117 (452)
T Consensus 79 ~g 80 (80)
T pfam02470 79 PG 80 (80)
T ss_pred CC
T ss_conf 88