Query         gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 452
No_of_seqs    295 out of 2333
Neff          11.7
Searched_HMMs 33803
Date          Sun May 22 13:07:09 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780140.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3g67_A Methyl-accepting chemo  96.6   0.046 1.4E-06   31.8  22.0   58  374-432   151-208 (213)
  2 >3g67_A Methyl-accepting chemo  96.6    0.05 1.5E-06   31.6  23.1   21  406-426   189-209 (213)
  3 >2ch7_A Methyl-accepting chemo  95.2    0.19 5.7E-06   27.5  22.0  202  220-426     2-205 (205)
  4 >2j5u_A MREC protein; bacteria  81.7     1.9 5.5E-05   20.6   3.8   42   47-93     29-70  (106)
  5 >2j5u_A MREC protein; bacteria  75.4     2.7 7.9E-05   19.5   3.1   41   38-78     26-74  (86)
  6 >1lvf_A Syntaxin 6; snare, thr  74.6     4.3 0.00013   18.0   5.5   28  368-395    46-73  (110)
  7 >2qf4_A Cell shape determining  74.0     4.3 0.00013   18.1   3.8   41   38-78     27-75  (87)
  8 >2ch7_A Methyl-accepting chemo  61.0       8 0.00024   16.1  11.0   25  405-429    79-103 (104)
  9 >3gqb_A V-type ATP synthase al  60.0     8.3 0.00025   16.0   3.9   24   48-71     18-42  (69)
 10 >2dpy_A FLII, flagellum-specif  53.7     9.8 0.00029   15.5   2.5   11   63-73     28-38  (84)
 11 >2qf4_A Cell shape determining  53.2      11 0.00032   15.3   3.4   39   47-90     30-68  (85)
 12 >1xme_C Cytochrome C oxidase p  52.0      11 0.00033   15.1   2.9   27    1-31      1-27  (34)
 13 >1wos_A Aminomethyltransferase  49.5      12 0.00036   14.9   8.4   50   39-90     60-109 (144)
 14 >2wps_A Trimeric autotransport  49.3      12 0.00036   14.9  13.8   21  408-428    81-101 (107)
 15 >3h9i_A Cation efflux system p  41.9      16 0.00046   14.1   5.5   69   35-103    16-93  (98)
 16 >3bz1_T PSII-T, PSII-TC, photo  41.8      16 0.00047   14.1   3.4   26   11-36      6-31  (32)
 17 >3e7w_A D-alanine--poly(phosph  41.1      16 0.00048   14.0   3.0   35   33-67      4-42  (143)
 18 >1pj5_A N,N-dimethylglycine ox  39.3      17 0.00051   13.8   8.6   53   40-93     60-112 (144)
 19 >3bu2_A Putative tRNA-binding   32.9      21 0.00063   13.1   3.9   32   59-90      4-35  (114)
 20 >2cp3_A CLIP-115, KIAA0291; mi  32.7      22 0.00064   13.1   5.6   63   47-118     3-65  (84)
 21 >1v5v_A Aminomethyltransferase  31.4      23 0.00067   13.0   7.3   43   47-90     10-52  (90)
 22 >3i9y_A Sensor protein; stacke  28.4      25 0.00075   12.6  16.4   20  409-428   186-205 (215)
 23 >2cp2_A CLIP-115, KIAA0291; mi  28.0      26 0.00076   12.6   4.8   66   46-120    13-78  (95)
 24 >2ey4_C Small nucleolar RNP si  22.6      32 0.00095   11.9   2.8   28   50-77     29-57  (82)
 25 >2rhq_B Phenylalanyl-tRNA synt  22.2      33 0.00097   11.9   3.5   18   60-77      2-19  (96)
 26 >2gag_A Heterotetrameric sarco  21.9      33 0.00098   11.8   4.2   51   53-105    47-97  (119)
 27 >2v31_A Ubiquitin-activating e  21.9      33 0.00098   11.8   3.2   25   40-64     30-54  (112)
 28 >2q2i_A AGR_C_4014P, secretion  20.4      35   0.001   11.6   3.9   30   58-87     13-42  (116)
 29 >2q2h_A AGR_C_4014P, secretion  20.4      36  0.0011   11.6   3.9   39   49-87     15-57  (131)
 30 >1ntg_A Tyrrs, tyrosyl-tRNA sy  20.2      36  0.0011   11.6   4.5   30   60-89      9-38  (172)

No 1  
>>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A (A:)
Probab=96.64  E-value=0.046  Score=31.80  Aligned_cols=58  Identities=9%  Similarity=0.176  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999998646428999999999999999999999999878
Q gi|254780140|r  374 RAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNHFDDCLNNFERN  432 (452)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  432 (452)
                      ..+..+......+...+..+...+..... ...++....+++...+..+...+..+...
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~e~~~~~~~i~~~i~~i~~~  208 (213)
T 3g67_A          151 ENLEFMANLFETVGKTLQNMVRFMENNVK-LLQEVRNSLDTSKESLSEKSAEIDSATKV  208 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999-99999999999999999999999999999


No 2  
>>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A (A:)
Probab=96.59  E-value=0.05  Score=31.58  Aligned_cols=21  Identities=5%  Similarity=0.142  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999
Q gi|254780140|r  406 NDIQNLVRKLQETVNHFDDCL  426 (452)
Q Consensus       406 ~~~~~~~~~~~~~~~~l~~~~  426 (452)
                      .++.....++...+..+...+
T Consensus       189 ~e~~~~~~~i~~~i~~i~~~~  209 (213)
T 3g67_A          189 DTSKESLSEKSAEIDSATKVL  209 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999998


No 3  
>>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} (A:52-256)
Probab=95.22  E-value=0.19  Score=27.48  Aligned_cols=202  Identities=6%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q ss_conf             11100000012344320001244333333344555544444431012577898889889999987755323332--2233
Q gi|254780140|r  220 ITDLITSLDKMIKAIDLQKVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMK--SKET  297 (452)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~  297 (452)
                      +..+...+..+...+  ..+......+......+......+......+......+......+...+..+.....  ...+
T Consensus         2 v~~~~~~~~el~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~   79 (205)
T 2ch7_A            2 VQETTAGSEEISSAT--KNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGAEEITSFV   79 (205)
T ss_dssp             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999--988888888877788999998877888999988888999998864122378888776899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             33210145677777765543322211122344431006888865798999999999999876401223679999999999
Q gi|254780140|r  298 SAFLENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNISALKENNSLFKDAQRAMH  377 (452)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~v~~~~~~id~~~~~~~~~~~~~~~~~~~~  377 (452)
                      .............+................+......+..+...+.....++......+....  .............+.
T Consensus        80 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~~la~~~~~~~~ei~~~~~~i~~~~--~~~~~~~~~~~~~~~  157 (205)
T 2ch7_A           80 ETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIA--EDAGKVSSEITARVE  157 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_conf             999863100005666567888740134430100012321010111237999988776565678--889999876245443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999998646428999999999999999999999
Q gi|254780140|r  378 TFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVNHFDDCL  426 (452)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  426 (452)
                      .+....+.+...+..+...+....... .++....+++...+..+...+
T Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~i~~~~ee~~~~~~ei~~~i  205 (205)
T 2ch7_A          158 EGTKLADEADEKLNSIVGAVERINEML-QNIAAAIEEQTAAVDEITTAM  205 (205)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             200121100110888999999999989-999999999999999999999


No 4  
>>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes} (A:64-130,A:217-255)
Probab=81.67  E-value=1.9  Score=20.57  Aligned_cols=42  Identities=24%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             87567668980789007433798888648886079999997489724
Q gi|254780140|r   47 GSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPL   93 (452)
Q Consensus        47 ~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i   93 (452)
                      +...|+++|.||...+--||+|.++...     ..+|.+-.++++.+
T Consensus        29 Gs~dGVk~gmpVIs~~GLVG~V~~V~~~-----sSrVlLITDp~~~~   70 (106)
T 2j5u_A           29 GSSDGVKPDMAVTTPSGLIGKVTTTGAK-----SATVELLTSSDYDL   70 (106)
T ss_dssp             CGGGTCCTTCEEEETTEEEEEEEEECSS-----CEEEEETTCCCSSC
T ss_pred             CCCCCCCCHHEEECCCCEEEEEEECCCC-----CEEEEEEEECCCCC
T ss_conf             1101123001021210102455541553-----01478875057038


No 5  
>>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes} (A:131-216)
Probab=75.40  E-value=2.7  Score=19.46  Aligned_cols=41  Identities=15%  Similarity=-0.025  Sum_probs=26.6

Q ss_pred             EEEEEEEECCCCCCCCCCCEE--------EEEEEEEEEEEEEEECCCCC
Q ss_conf             189999971875676689807--------89007433798888648886
Q gi|254780140|r   38 MAEVIIRIPGSVDGLSTDSSV--------RFNGIPVGRIVGLFLDQEYP   78 (452)
Q Consensus        38 ~~~~~~~f~~~v~GL~~gspV--------~~~Gv~VG~V~~I~l~~~~~   78 (452)
                      ...+.+.|.+.-.-+++|+.|        +-.|++||+|+++..+.++.
T Consensus        26 ~~~l~l~~i~~~~~i~~Gd~VvTSG~~g~fP~Gi~VG~V~~v~~~~~~~   74 (86)
T 2j5u_A           26 TKLLELKQLPYDMKFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGL   74 (86)
T ss_dssp             TTEEEEEEEETTSCCCTTCEEEECCTTSSSCTTCEEEEEEEEEECTTSS
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCC
T ss_conf             7754222111244567897799816676189998889999985078873


No 6  
>>1lvf_A Syntaxin 6; snare, three-helix bundle, transport protein; 2.10A {Rattus norvegicus} (A:)
Probab=74.57  E-value=4.3  Score=17.99  Aligned_cols=28  Identities=7%  Similarity=0.139  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999
Q gi|254780140|r  368 LFKDAQRAMHTFRDTSEKINRYIPSIGN  395 (452)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (452)
                      +..++...+.+++..++.+...+.-+..
T Consensus        46 ~~~eL~~~l~~i~w~L~DLe~av~~ve~   73 (110)
T 1lvf_A           46 TTNELRNNLRSIEWDLEDLDETISIVEA   73 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999799999999999985


No 7  
>>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae R6} PDB: 2qf5_A (A:69-155)
Probab=73.98  E-value=4.3  Score=18.05  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=28.0

Q ss_pred             EEEEEEEECCCCCCCCCCCE--------EEEEEEEEEEEEEEEECCCCC
Q ss_conf             18999997187567668980--------789007433798888648886
Q gi|254780140|r   38 MAEVIIRIPGSVDGLSTDSS--------VRFNGIPVGRIVGLFLDQEYP   78 (452)
Q Consensus        38 ~~~~~~~f~~~v~GL~~gsp--------V~~~Gv~VG~V~~I~l~~~~~   78 (452)
                      ..++.+.|.+.-.-+++|+.        ++-.|++||+|+++..++++.
T Consensus        27 ~~~l~l~~i~~~~~i~~Gd~vvTSG~~g~fP~GipVG~V~~v~~~~~~~   75 (87)
T 2qf4_A           27 NDVLKISQLNSNSDISAGDKVTTGGLGNFNVADIPVGEVVATTHSTDYL   75 (87)
T ss_dssp             TTEEEEECCSCCCCCCTTCEEEEECCSSSCCEEEEEEEEEEEESTTCSS
T ss_pred             CCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCC
T ss_conf             6640452123445335785499826456689997889999986179872


No 8  
>>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} (A:1-51,A:257-309)
Probab=60.99  E-value=8  Score=16.13  Aligned_cols=25  Identities=12%  Similarity=0.418  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999999999999999
Q gi|254780140|r  405 LNDIQNLVRKLQETVNHFDDCLNNF  429 (452)
Q Consensus       405 ~~~~~~~~~~~~~~~~~l~~~~~~l  429 (452)
                      ..++....+++.+.+..|...+..|
T Consensus        79 aeevasaSeeLs~lAeeL~~lVsrF  103 (104)
T 2ch7_A           79 TEEVTSRVQTIRENVQMLKEIVARY  103 (104)
T ss_dssp             HHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999999754


No 9  
>>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 1um2_C (A:1-69)
Probab=59.98  E-value=8.3  Score=16.01  Aligned_cols=24  Identities=21%  Similarity=0.191  Sum_probs=11.2

Q ss_pred             CCCCCCCCCEEEEEE-EEEEEEEEE
Q ss_conf             756766898078900-743379888
Q gi|254780140|r   48 SVDGLSTDSSVRFNG-IPVGRIVGL   71 (452)
Q Consensus        48 ~v~GL~~gspV~~~G-v~VG~V~~I   71 (452)
                      .+.|..-|.-|++.| -..|+|-++
T Consensus        18 ~~~~v~~~EiV~I~g~~~~GeVi~i   42 (69)
T 3gqb_A           18 GMLGARMYDISKVGEEGLVGEIIRL   42 (69)
T ss_dssp             SCTTCCTTEEEEETTTTEEEEEEEE
T ss_pred             ECCCCCCCCEEEECCCCEEEEEEEE
T ss_conf             0788842558998899579999999


No 10 
>>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} (A:1-84)
Probab=53.67  E-value=9.8  Score=15.51  Aligned_cols=11  Identities=18%  Similarity=0.298  Sum_probs=5.1

Q ss_pred             EEEEEEEEEEE
Q ss_conf             74337988886
Q gi|254780140|r   63 IPVGRIVGLFL   73 (452)
Q Consensus        63 v~VG~V~~I~l   73 (452)
                      ..+|.+-.|..
T Consensus        28 ~~iGe~c~I~~   38 (84)
T 2dpy_A           28 LPLGATCIIER   38 (84)
T ss_dssp             CCSSCEEEEEE
T ss_pred             CCCCCEEEEEE
T ss_conf             89899899994


No 11 
>>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae R6} PDB: 2qf5_A (A:1-68,A:156-172)
Probab=53.20  E-value=11  Score=15.26  Aligned_cols=39  Identities=18%  Similarity=0.251  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCC
Q ss_conf             87567668980789007433798888648886079999997489
Q gi|254780140|r   47 GSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPD   90 (452)
Q Consensus        47 ~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~   90 (452)
                      +.-.|+++|.||-..+--||+|.++...     ..+|.+-.++.
T Consensus        30 G~~dGI~~gm~Vi~~~GLVG~V~~V~~~-----tS~VlLItd~~   68 (85)
T 2qf4_A           30 GRSKGASENMLAIANGGLIGSVSKVEEN-----STIVNLLTNTE   68 (85)
T ss_dssp             CGGGTCCTTCEEEETTEEEEEEEEECSS-----CEEEEETTCSB
T ss_pred             CCHHCCCCCCEEEECCCCEEEEEEECCE-----EEEEEEEECCC
T ss_conf             6040897899999688528999974330-----68999874465


No 12 
>>1xme_C Cytochrome C oxidase polypeptide IIA; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} (C:)
Probab=52.00  E-value=11  Score=15.13  Aligned_cols=27  Identities=26%  Similarity=0.491  Sum_probs=16.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9632789999999999999999999986254
Q gi|254780140|r    1 MESKNYYTSVGLFVVSILFFSFFSIYWLSRS   31 (452)
Q Consensus         1 m~~~~~~~~vG~fvi~~~~~~~~~~~~~~~~   31 (452)
                      ||+|-    +|..-+..+..+..+++||+..
T Consensus         1 meekp----~gal~vi~il~l~ilvfw~gv~   27 (34)
T 1xme_C            1 MEEKP----KGALAVILVLTLTILVFWLGVY   27 (34)
T ss_dssp             -CCCC----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99786----4157999999999999999999


No 13 
>>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} (A:221-364)
Probab=49.49  E-value=12  Score=14.87  Aligned_cols=50  Identities=22%  Similarity=0.179  Sum_probs=34.1

Q ss_pred             EEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCC
Q ss_conf             8999997187567668980789007433798888648886079999997489
Q gi|254780140|r   39 AEVIIRIPGSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPD   90 (452)
Q Consensus        39 ~~~~~~f~~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~   90 (452)
                      ..+-+.+ +.-.=+..|++|+..|-.||.|++..+.|.- ++.+..-.++.+
T Consensus        60 rlv~l~~-~~~~~~~~g~~i~~~g~~VG~vtS~~~sp~l-~~~ialA~i~~~  109 (144)
T 1wos_A           60 KLVALEL-SGKRIARKGYEVLKNGERVGEITSGNFSPTL-GKSIALALVSKS  109 (144)
T ss_dssp             EEEEEEE-SSSCCCCTTCEEEETTEEEEEEEEEEEETTT-TEEEEEEEEETT
T ss_pred             EEEEEEE-ECCCCCCCCCEEEECCEEEEEEEEEEECHHC-CCEEEEEEECCC
T ss_conf             1454432-1002468998688899088997546696304-938999999955


No 14 
>>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A (A:)
Probab=49.32  E-value=12  Score=14.85  Aligned_cols=21  Identities=5%  Similarity=0.207  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999
Q gi|254780140|r  408 IQNLVRKLQETVNHFDDCLNN  428 (452)
Q Consensus       408 ~~~~~~~~~~~~~~l~~~~~~  428 (452)
                      +...+.++...+..+..-+..
T Consensus        81 ~e~~~~~~~~~~~~l~~~~~~  101 (107)
T 2wps_A           81 ILSKIYHIENEIARIKKLIKL  101 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             997899999889999999988


No 15 
>>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B (A:102-118,A:242-322)
Probab=41.94  E-value=16  Score=14.09  Aligned_cols=69  Identities=14%  Similarity=0.046  Sum_probs=45.5

Q ss_pred             CCCEEEEEEEEC-CCCCCCCCCCEEEEE-----EE-EEEEEEEEEECCCC-CEEEEEEEEEC-CCCCCCCCCEEEEEE
Q ss_conf             776189999971-875676689807890-----07-43379888864888-60799999974-897246884699974
Q gi|254780140|r   35 DGPMAEVIIRIP-GSVDGLSTDSSVRFN-----GI-PVGRIVGLFLDQEY-PNHSLAKALIR-PDTPLYPSTTATIRT  103 (452)
Q Consensus        35 ~~~~~~~~~~f~-~~v~GL~~gspV~~~-----Gv-~VG~V~~I~l~~~~-~~~v~v~~~i~-~~~~i~~~~~~~i~~  103 (452)
                      ..+...+.+.++ ..+..+++|.+|.+.     |- --|+|..|....|. .+...|++.++ ++..++.+-.+.+..
T Consensus        16 ~~~~l~v~~~Vpe~~i~~ik~Gq~v~v~~~~~~~~~~~g~V~~I~p~~d~~t~t~~Vri~i~n~~~~L~pGm~~~v~I   93 (98)
T 3h9i_A           16 NEDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQL   93 (98)
T ss_dssp             CGSCEEEECEEEHHHHHHCCCTTSEEEECSSSCCSCCCEEEEEEEEEEETTTTEEEEEEEECTTSSCCCTTCEEEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             741222322211001110133543168741223222233332222112221111222223334566789997899999


No 16 
>>3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3a0b_T* 3a0h_T* (T:)
Probab=41.78  E-value=16  Score=14.07  Aligned_cols=26  Identities=12%  Similarity=0.285  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999999999998625444677
Q gi|254780140|r   11 GLFVVSILFFSFFSIYWLSRSNQYDG   36 (452)
Q Consensus        11 G~fvi~~~~~~~~~~~~~~~~~~~~~   36 (452)
                      =+|+++.++.++++.++|....+..+
T Consensus         6 yv~i~acii~lfffaiffre~p~i~k   31 (32)
T 3bz1_T            6 YVFIFACIIALFFFAIFFREPPRITK   31 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             58999999999999998437987677


No 17 
>>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* (A:135-164,A:399-511)
Probab=41.05  E-value=16  Score=14.00  Aligned_cols=35  Identities=11%  Similarity=0.148  Sum_probs=24.3

Q ss_pred             CCCCCEEEEEEEECCCCCCCCCC----CEEEEEEEEEEE
Q ss_conf             46776189999971875676689----807890074337
Q gi|254780140|r   33 QYDGPMAEVIIRIPGSVDGLSTD----SSVRFNGIPVGR   67 (452)
Q Consensus        33 ~~~~~~~~~~~~f~~~v~GL~~g----spV~~~Gv~VG~   67 (452)
                      .|.+...++++.|..--+|+.+|    .-|+++|.+|.-
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~qVKi~G~rI~~   42 (143)
T 3e7w_A            4 QWVKEHETFYIIYTSGSTGNPKGVQISFQIKLHGYRMEL   42 (143)
T ss_dssp             GSCCTTSEEEEEEECCTTSSCEEEEEESEEEETTEEEEH
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCEEECH
T ss_conf             679856627886114443233211112358889899999


No 18 
>>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} (A:687-830)
Probab=39.32  E-value=17  Score=13.82  Aligned_cols=53  Identities=9%  Similarity=0.070  Sum_probs=36.1

Q ss_pred             EEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             999997187567668980789007433798888648886079999997489724
Q gi|254780140|r   40 EVIIRIPGSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPL   93 (452)
Q Consensus        40 ~~~~~f~~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i   93 (452)
                      .+.+.+.+...-...|.++...|-.||.|++..+.|.- ++.+....|+.+...
T Consensus        60 lv~l~~~~~~~~~~~~~~~~~~g~~vG~vtS~~~sp~l-~~~iala~i~~~~~~  112 (144)
T 1pj5_A           60 LRCLTIDDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTV-AKPIAYSYLPGTVSV  112 (144)
T ss_dssp             EEEEEETTSCCCCCSCCEEEETTEEEEECCSEEEETTT-TEEEEEEEEETTCCT
T ss_pred             EEEEEECCCCCCCCCCCEEEECCCEEEECCEEEECHHC-CCEEEEEEECCCCCC
T ss_conf             99999858985789998485399428992334232413-907999996777589


No 19 
>>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} (A:86-199)
Probab=32.92  E-value=21  Score=13.14  Aligned_cols=32  Identities=9%  Similarity=-0.054  Sum_probs=23.7

Q ss_pred             EEEEEEEEEEEEEEECCCCCEEEEEEEEECCC
Q ss_conf             89007433798888648886079999997489
Q gi|254780140|r   59 RFNGIPVGRIVGLFLDQEYPNHSLAKALIRPD   90 (452)
Q Consensus        59 ~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~   90 (452)
                      ++.+++||+|.++...|+.+.-..+++.+-..
T Consensus         4 ~~~di~vgkI~~~~~hp~a~kL~v~~Vd~G~~   35 (114)
T 3bu2_A            4 FTPKFVVGYVETKDKHPDADKLSVLSVDVATE   35 (114)
T ss_dssp             CCCSEEEEEEEEEEECTTTSSCEEEEEECSSC
T ss_pred             CCCCEEEEEEEEEEECCCCCEEEEEEEECCCC
T ss_conf             77997999999989659999689999987885


No 20 
>>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=32.69  E-value=22  Score=13.11  Aligned_cols=63  Identities=16%  Similarity=0.144  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCC
Q ss_conf             875676689807890074337988886488860799999974897246884699974232102332101465
Q gi|254780140|r   47 GSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLR  118 (452)
Q Consensus        47 ~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g~~~i~~~~~~  118 (452)
                      .+...|.+|+.|.+.|...|.|.-|-.-+...+ ..+=++++.  +....      ...+-|..|....++.
T Consensus         3 ~~~~~~~vG~rV~v~~~~~G~iryiG~~~~~~g-~~vGVeld~--~~Gk~------dG~~~G~rYF~C~~~~   65 (84)
T 2cp3_A            3 SGSSGLRLGDRVLVGGTKTGVVRYVGETDFAKG-EWCGVELDE--PLGKN------DGAVAGTRYFQCPPKF   65 (84)
T ss_dssp             SSSCSCCTTCEEEETTTEEEEEEEEEECSSSSS-EEEEEEESS--SCCSB------SSEETTEESSCCCTTT
T ss_pred             CCCCCCEECCEEEECCCCEEEEEEEECCCCCCC-CEEEEEECC--CCCCC------CCEECCEEEEECCCCC
T ss_conf             766885748999989986799999601699898-799999688--88887------9999999988559993


No 21 
>>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} (A:312-401)
Probab=31.40  E-value=23  Score=12.97  Aligned_cols=43  Identities=16%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCC
Q ss_conf             87567668980789007433798888648886079999997489
Q gi|254780140|r   47 GSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPD   90 (452)
Q Consensus        47 ~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~   90 (452)
                      ++-.-+..|.+|+..|-.||.|++-.+.|.- ++.+..-.++.+
T Consensus        10 ~~~~~~~~g~~v~~dg~~VG~vTS~~~Sp~~-g~~Iala~v~~~   52 (90)
T 1v5v_A           10 IDKGIPREGYKVYANGEMIGEVTSGTLSPLL-NVGIGIAFVKEE   52 (90)
T ss_dssp             SSSCCCCTTCEEEETTEEEEEEEEEEECTTT-CSEEEEEEEEGG
T ss_pred             CCCCCCCCCCEEEECCEEEEEECCEEECHHC-CCEEEEEEECHH
T ss_conf             5787889999797799389991425587105-907999998877


No 22 
>>3i9y_A Sensor protein; stacked two four-helix bundles, ATP-binding, kinase, nucleotide-binding, phosphoprotein, transferase, transmembrane; 2.16A {Vibrio parahaemolyticus} (A:62-276)
Probab=28.36  E-value=25  Score=12.62  Aligned_cols=20  Identities=25%  Similarity=0.419  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999
Q gi|254780140|r  409 QNLVRKLQETVNHFDDCLNN  428 (452)
Q Consensus       409 ~~~~~~~~~~~~~l~~~~~~  428 (452)
                      .....+.......++..++.
T Consensus       186 ~~~~q~~~~~~~~l~~~v~~  205 (215)
T 3i9y_A          186 QQLMQKTLELFSELNSTVNK  205 (215)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999888799999


No 23 
>>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=27.96  E-value=26  Score=12.57  Aligned_cols=66  Identities=20%  Similarity=0.261  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf             187567668980789007433798888648886079999997489724688469997423210233210146532
Q gi|254780140|r   46 PGSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE  120 (452)
Q Consensus        46 ~~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g~~~i~~~~~~~~  120 (452)
                      +.+...|.+|+.|.+.|...|.|.-|-.-+...+ .-+=+++|  .++...      ...+-|..|....++...
T Consensus        13 ~~~~~~~~vG~rV~v~~~~~G~vryiG~~~~~~g-~~vGVEld--~p~G~~------DG~~~G~rYF~c~~~~G~   78 (95)
T 2cp2_A           13 DDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPG-QWAGVVLD--DPVGKN------DGAVGGVRYFECPALQGI   78 (95)
T ss_dssp             BSSCCSCCTTCEEEGGGSCEEEEEEEEECSSSCS-EEEEEEES--SSCSSB------BSEETTEECCCCCTTTEE
T ss_pred             CCHHCCCCCCCEEEECCCCEEEEEEECCCCCCCC-EEEEEEEC--CCCCCC------CCEECCEEEEECCCCCEE
T ss_conf             3103027018999989984899999722679886-59999978--888888------998999998846999768


No 24 
>>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structure initiative; 2.11A {Pyrococcus furiosus dsm 3638} (C:)
Probab=22.59  E-value=32  Score=11.90  Aligned_cols=28  Identities=18%  Similarity=-0.086  Sum_probs=19.7

Q ss_pred             CCCCCCCEEEEE-EEEEEEEEEEEECCCC
Q ss_conf             676689807890-0743379888864888
Q gi|254780140|r   50 DGLSTDSSVRFN-GIPVGRIVGLFLDQEY   77 (452)
Q Consensus        50 ~GL~~gspV~~~-Gv~VG~V~~I~l~~~~   77 (452)
                      .=+..|++|... +-.||+|.+|--.-+.
T Consensus        29 ~vp~~~s~v~~e~~~~IGkV~evfGpv~~   57 (82)
T 2ey4_C           29 WVPSLNDRVVDKRLQFVGIVKDVFGPVKM   57 (82)
T ss_dssp             SCCCTTCEEECTTCCCCEEEEEEEEESSS
T ss_pred             CCCCCCCEEECCCCCEEEEEEEEECCCCC
T ss_conf             88989999894688498899898788888


No 25 
>>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* (B:41-136)
Probab=22.24  E-value=33  Score=11.86  Aligned_cols=18  Identities=17%  Similarity=0.082  Sum_probs=15.5

Q ss_pred             EEEEEEEEEEEEEECCCC
Q ss_conf             900743379888864888
Q gi|254780140|r   60 FNGIPVGRIVGLFLDQEY   77 (452)
Q Consensus        60 ~~Gv~VG~V~~I~l~~~~   77 (452)
                      |.+++||+|.++...|+.
T Consensus         2 f~~i~vg~I~~~~~hp~a   19 (96)
T 2rhq_B            2 IKNLVVGYIQSKEKGSGN   19 (96)
T ss_dssp             CEEEEEEEEEEEECSSSC
T ss_pred             CCCEEEEEEECCCCCCCC
T ss_conf             798899999466589896


No 26 
>>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* (A:847-965)
Probab=21.95  E-value=33  Score=11.82  Aligned_cols=51  Identities=10%  Similarity=-0.003  Sum_probs=31.6

Q ss_pred             CCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECC
Q ss_conf             68980789007433798888648886079999997489724688469997423
Q gi|254780140|r   53 STDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQG  105 (452)
Q Consensus        53 ~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~  105 (452)
                      ..|.||+..|-.||+|++-.+.|.- ++.+..-.++.+... .+..+.+...+
T Consensus        47 ~~~~~i~~~g~~vG~vTS~~~Sp~l-~~~Iala~i~~~~~~-~G~~v~v~~~g   97 (119)
T 2gag_A           47 SDALASEGITPMEGWVTSSYDSPNL-GRTFGLALIKNGRNR-IGEVLKTPVGD   97 (119)
T ss_dssp             TTCCCBTTBCCCCEEEEEEEEETTT-TEEEEEEEEETGGGC-TTCEEEEEETT
T ss_pred             CCCCCCCCCCCCEEEEEEEEECHHC-CEEEEEEEECCCCCC-CCCEEEEEECC
T ss_conf             8961037886727999577576433-907999999943368-99889999899


No 27 
>>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus} (A:)
Probab=21.93  E-value=33  Score=11.82  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=18.9

Q ss_pred             EEEEEECCCCCCCCCCCEEEEEEEE
Q ss_conf             9999971875676689807890074
Q gi|254780140|r   40 EVIIRIPGSVDGLSTDSSVRFNGIP   64 (452)
Q Consensus        40 ~~~~~f~~~v~GL~~gspV~~~Gv~   64 (452)
                      -++....+...||..|+-|+|++|.
T Consensus        30 gvVt~~~~~~Hgl~~GD~V~fseV~   54 (112)
T 2v31_A           30 GVVTCLDEARHGFETGDFVSFSEVQ   54 (112)
T ss_dssp             EEEEECTTCCCCCCTTCEEEECSEE
T ss_pred             EEEEEECCCCCCCCCCCEEEEEEEE
T ss_conf             7999816987688879999998874


No 28 
>>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretion; 1.55A {Agrobacterium tumefaciens str} (A:)
Probab=20.42  E-value=35  Score=11.61  Aligned_cols=30  Identities=20%  Similarity=0.081  Sum_probs=21.6

Q ss_pred             EEEEEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             789007433798888648886079999997
Q gi|254780140|r   58 VRFNGIPVGRIVGLFLDQEYPNHSLAKALI   87 (452)
Q Consensus        58 V~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i   87 (452)
                      ..+-++.||+|.++...|+.+.-.++.+.+
T Consensus        13 ~~~~~i~vg~I~~~~~hp~sdkL~v~~V~~   42 (116)
T 2q2i_A           13 FEKVDIRVGTIVEAVPFPEARKPAIKVKID   42 (116)
T ss_dssp             HHTSCEEEEEEEEEEECTTSSSCCEEEEEE
T ss_pred             HEEEEEEEEEEEEEEECCCCCCEEEEEEEE
T ss_conf             301438999999999755642004678985


No 29 
>>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptide; beta barrel, OB fold, homodimer, protein secretion; HET: CIT; 1.65A {Agrobacterium tumefaciens str} (A:)
Probab=20.39  E-value=36  Score=11.60  Aligned_cols=39  Identities=15%  Similarity=0.040  Sum_probs=25.7

Q ss_pred             CCCCCCCCEE----EEEEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             5676689807----89007433798888648886079999997
Q gi|254780140|r   49 VDGLSTDSSV----RFNGIPVGRIVGLFLDQEYPNHSLAKALI   87 (452)
Q Consensus        49 v~GL~~gspV----~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i   87 (452)
                      -.|+.+...-    .+.++.||+|.++...|+.+.-.+..+.+
T Consensus        15 ~~g~eve~i~~~~~~~~~i~vgkV~~~~~hp~sdkL~v~~vd~   57 (131)
T 2q2h_A           15 PTAANSGEISYADFEKVDIRVGTIVEAVPFPEARKPAIKVKID   57 (131)
T ss_dssp             CCCCCCCCCCHHHHHTSCEEEEEEEEEEECTTCSSCCEEEEEE
T ss_pred             CCCCCCCEECHHHHEEEEEEEEEEEEEEECCCCCCEEEEEEEE
T ss_conf             8878878037788202427999999999733535102899995


No 30 
>>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} (A:)
Probab=20.21  E-value=36  Score=11.58  Aligned_cols=30  Identities=17%  Similarity=0.118  Sum_probs=22.5

Q ss_pred             EEEEEEEEEEEEEECCCCCEEEEEEEEECC
Q ss_conf             900743379888864888607999999748
Q gi|254780140|r   60 FNGIPVGRIVGLFLDQEYPNHSLAKALIRP   89 (452)
Q Consensus        60 ~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~   89 (452)
                      +.++.||+|.++...|+.+.-.+..+.+-.
T Consensus         9 ~~~i~vg~V~~~~~hP~adkL~~~~Vd~G~   38 (172)
T 1ntg_A            9 RLDIRVGKIITVEKHPDADSLYVEKIDVGE   38 (172)
T ss_dssp             GSCEEEEEEEEEEECTTCSSCEEEEEECSS
T ss_pred             CEEEEEEEEEEEEECCCCCEEEEEEEEECC
T ss_conf             100799999998868999856899999089


Done!