Query gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 452
No_of_seqs 295 out of 2333
Neff 11.7
Searched_HMMs 23785
Date Sun May 22 07:30:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780140.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ch7_A Methyl-accepting chemot 97.8 0.002 8.3E-08 40.3 23.1 23 408-430 273-295 (309)
2 1qu7_A Methyl-accepting chemot 97.1 0.014 6E-07 34.3 23.1 166 256-430 57-223 (227)
3 2ch7_A Methyl-accepting chemot 96.5 0.038 1.6E-06 31.3 26.7 29 407-435 265-293 (309)
4 1qu7_A Methyl-accepting chemot 96.1 0.066 2.8E-06 29.7 21.1 25 408-432 194-218 (227)
5 2nrj_A HBL B protein; enteroto 84.6 1.5 6.3E-05 20.2 12.4 25 374-398 271-295 (346)
6 2j5u_A MREC protein; bacterial 80.2 2.2 9.1E-05 19.1 5.6 27 47-73 92-118 (255)
7 3ghg_C Fibrinogen gamma chain; 73.9 3.2 0.00013 17.9 11.4 27 406-432 108-134 (411)
8 1lvf_A Syntaxin 6; snare, thre 73.3 3.3 0.00014 17.8 5.5 24 370-393 48-71 (110)
9 1m1j_C Fibrinogen gamma chain; 72.5 3.4 0.00014 17.7 9.7 30 406-435 108-137 (409)
10 2qf4_A Cell shape determining 62.4 5.3 0.00022 16.3 3.7 39 47-90 30-68 (172)
11 1xme_C Cytochrome C oxidase po 52.0 7.8 0.00033 15.1 2.9 27 1-31 1-27 (34)
12 2dpy_A FLII, flagellum-specifi 52.0 7.8 0.00033 15.1 2.8 24 40-64 59-82 (438)
13 3bz1_T PSII-T, PSII-TC, photos 41.8 11 0.00047 14.1 3.4 26 11-36 6-31 (32)
14 2c61_A A-type ATP synthase non 37.3 13 0.00054 13.6 1.8 20 433-452 446-465 (469)
15 1z1n_X Sixteen heme cytochrome 31.9 5.9 0.00025 16.0 -0.7 26 2-27 3-28 (560)
16 2eqn_A Hypothetical protein LO 30.9 14 0.00061 13.3 1.2 47 52-108 19-65 (103)
17 2v3m_A NAF1; ribosomal protein 27.9 18 0.00077 12.6 1.7 49 52-109 24-73 (131)
18 2dnx_A Syntaxin-12; snare, HAB 26.9 19 0.0008 12.4 11.6 18 409-426 94-111 (130)
19 1v5v_A Aminomethyltransferase; 25.1 20 0.00085 12.2 9.4 15 62-76 79-94 (401)
20 2knc_A Integrin alpha-IIB; tra 22.9 22 0.00094 11.9 2.1 22 14-35 19-40 (54)
21 2cp0_A Clipr-59 protein, clipr 22.1 23 0.00097 11.8 4.4 62 48-118 13-74 (95)
22 1cz4_A VCP-like ATPase; double 21.7 24 0.00099 11.8 2.3 26 49-75 33-58 (185)
23 2cp3_A CLIP-115, KIAA0291; mic 21.0 24 0.001 11.7 5.5 62 48-118 4-65 (84)
No 1
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=97.81 E-value=0.002 Score=40.35 Aligned_cols=23 Identities=0% Similarity=0.211 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998
Q gi|254780140|r 408 IQNLVRKLQETVNHFDDCLNNFE 430 (452)
Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~~l~ 430 (452)
+...+.++...+..+...+..+.
T Consensus 273 ~~~~~~~l~~~~~~l~~~~~~l~ 295 (309)
T 2ch7_A 273 VNARLQEISASTEEVTSRVQTIR 295 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999
No 2
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=97.10 E-value=0.014 Score=34.30 Aligned_cols=166 Identities=7% Similarity=0.132 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44444431012577898889889999987755323332223333210145677777765543322211122344431006
Q gi|254780140|r 256 SSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTINTI 335 (452)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 335 (452)
....+......+...+..+.++.++.+-+ .+++.+.+.+.+.....+....+.++................ +.
T Consensus 57 ~~~~l~~~~~~I~~i~~~I~~Ia~QTNLL--ALNAsIEAARAGe~GrGFaVVA~EIrkLA~~t~~a~~~I~~~---i~-- 129 (227)
T 1qu7_A 57 TMRDISTSSQKIADIISVIDGIAFQTNIL--ALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSL---IE-- 129 (227)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHH--HHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--
T ss_conf 99999999999999999999999886688--754888861155405327899999999999999999999999---99--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88886579899999999999987640-12236799999999999999999999999999999998646428999999999
Q gi|254780140|r 336 ENITSNLNDSSQKFAELMSKINNISA-LKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRK 414 (452)
Q Consensus 336 ~~~~~~l~~~~~~v~~~~~~id~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 414 (452)
++...+......+......+..+.. ..+......++....+......+.+...+..+........ ....++.....+
T Consensus 130 -~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~I~~~~~~~~~~~~~i~~~i~~i~~~~~~~~-~~~~e~~~~~~~ 207 (227)
T 1qu7_A 130 -DSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNA-ALVEQSAAAAAA 207 (227)
T ss_dssp -HHHHHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf -999999999999999999999999999999999999999999999999999999999999999999-999988765899
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999998
Q gi|254780140|r 415 LQETVNHFDDCLNNFE 430 (452)
Q Consensus 415 ~~~~~~~l~~~~~~l~ 430 (452)
+.+....|...+..|+
T Consensus 208 l~~~a~~L~~~v~~Fk 223 (227)
T 1qu7_A 208 LEEQASRLTEAVAVFR 223 (227)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999996701
No 3
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=96.53 E-value=0.038 Score=31.31 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 99999999999999999999999878888
Q gi|254780140|r 407 DIQNLVRKLQETVNHFDDCLNNFERNPQD 435 (452)
Q Consensus 407 ~~~~~~~~~~~~~~~l~~~~~~l~~~p~~ 435 (452)
++...+.++...+..+...+..+....+.
T Consensus 265 ~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ 293 (309)
T 2ch7_A 265 EITNSVKEVNARLQEISASTEEVTSRVQT 293 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999
No 4
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=96.08 E-value=0.066 Score=29.66 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999878
Q gi|254780140|r 408 IQNLVRKLQETVNHFDDCLNNFERN 432 (452)
Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~~l~~~ 432 (452)
+....+++......|......|...
T Consensus 194 ~~~~~~e~~~~~~~l~~~a~~L~~~ 218 (227)
T 1qu7_A 194 NAALVEQSAAAAAALEEQASRLTEA 218 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998876589999999999999
No 5
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=84.64 E-value=1.5 Score=20.18 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999
Q gi|254780140|r 374 RAMHTFRDTSEKINRYIPSIGNNLQ 398 (452)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~l~ 398 (452)
.+++.+...-..+...+..+-..+.
T Consensus 271 ~aL~~i~~~W~~l~~~~~~ll~~v~ 295 (346)
T 2nrj_A 271 NALTYMSTQWHDLDSQYSGVLGHIE 295 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999989999999998
No 6
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=80.18 E-value=2.2 Score=19.06 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEEEEE
Q ss_conf 875676689807890074337988886
Q gi|254780140|r 47 GSVDGLSTDSSVRFNGIPVGRIVGLFL 73 (452)
Q Consensus 47 ~~v~GL~~gspV~~~Gv~VG~V~~I~l 73 (452)
++-.|+++|.||...+--||+|.++..
T Consensus 92 G~~dGI~~g~~Vi~~~GlVG~V~~v~~ 118 (255)
T 2j5u_A 92 GSSDGVKPDMAVTTPSGLIGKVTTTGA 118 (255)
T ss_dssp CGGGTCCTTCEEEETTEEEEEEEEECS
T ss_pred CCCCCCCCCCEEEECCCCEEEEEEECC
T ss_conf 830377789658842663579999646
No 7
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=73.91 E-value=3.2 Score=17.88 Aligned_cols=27 Identities=7% Similarity=0.223 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999999999878
Q gi|254780140|r 406 NDIQNLVRKLQETVNHFDDCLNNFERN 432 (452)
Q Consensus 406 ~~~~~~~~~~~~~~~~l~~~~~~l~~~ 432 (452)
.+++..+...+..+..+...+..++..
T Consensus 108 ~qLq~~l~~l~~~i~~lk~~I~qLeek 134 (411)
T 3ghg_C 108 RYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 777778899998989999999999976
No 8
>1lvf_A Syntaxin 6; snare, three-helix bundle, transport protein; 2.10A {Rattus norvegicus} SCOP: a.47.2.1
Probab=73.28 E-value=3.3 Score=17.78 Aligned_cols=24 Identities=8% Similarity=0.226 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254780140|r 370 KDAQRAMHTFRDTSEKINRYIPSI 393 (452)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~ 393 (452)
.++...+.++...++.+...+.-+
T Consensus 48 ~eL~~~l~~ie~dL~dLe~av~~v 71 (110)
T 1lvf_A 48 NELRNNLRSIEWDLEDLDETISIV 71 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999997999999999999
No 9
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.46 E-value=3.4 Score=17.65 Aligned_cols=30 Identities=7% Similarity=0.216 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 999999999999999999999999878888
Q gi|254780140|r 406 NDIQNLVRKLQETVNHFDDCLNNFERNPQD 435 (452)
Q Consensus 406 ~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~ 435 (452)
.+++..+......+..+...+..++...+.
T Consensus 108 ~eLq~~l~~~~~~I~~LkqkI~qLeqq~qe 137 (409)
T 1m1j_C 108 QQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999987776556799999999987501
No 10
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae R6} PDB: 2qf5_A
Probab=62.38 E-value=5.3 Score=16.29 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=28.9
Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCC
Q ss_conf 87567668980789007433798888648886079999997489
Q gi|254780140|r 47 GSVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPD 90 (452)
Q Consensus 47 ~~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~ 90 (452)
++..|+++|+||...+--||+|.++... ...|.+-.+.+
T Consensus 30 G~~~GI~~g~~Vi~~~GlVG~V~~v~~~-----~S~V~litd~~ 68 (172)
T 2qf4_A 30 GRSKGASENMLAIANGGLIGSVSKVEEN-----STIVNLLTNTE 68 (172)
T ss_dssp CGGGTCCTTCEEEETTEEEEEEEEECSS-----CEEEEETTCSB
T ss_pred CHHHCCCCCCEEEECCCCEEEEEEECCC-----EEEEEEEECCC
T ss_conf 6041898899999899648999994772-----68999974565
No 11
>1xme_C Cytochrome C oxidase polypeptide IIA; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.23.9.1 PDB: 2qpd_C* 2qpe_C* 3bvd_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C*
Probab=52.00 E-value=7.8 Score=15.13 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9632789999999999999999999986254
Q gi|254780140|r 1 MESKNYYTSVGLFVVSILFFSFFSIYWLSRS 31 (452)
Q Consensus 1 m~~~~~~~~vG~fvi~~~~~~~~~~~~~~~~ 31 (452)
||+|- +|..-+..+..+..+++||+..
T Consensus 1 meekp----~gal~vi~il~l~ilvfw~gv~ 27 (34)
T 1xme_C 1 MEEKP----KGALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp -CCCC----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99786----4157999999999999999999
No 12
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=51.98 E-value=7.8 Score=15.13 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=15.2
Q ss_pred EEEEEECCCCCCCCCCCEEEEEEEE
Q ss_conf 9999971875676689807890074
Q gi|254780140|r 40 EVIIRIPGSVDGLSTDSSVRFNGIP 64 (452)
Q Consensus 40 ~~~~~f~~~v~GL~~gspV~~~Gv~ 64 (452)
.+...| ++..||.+|++|+..|-.
T Consensus 59 ~~l~~~-~~t~Gi~~G~~V~~tg~~ 82 (438)
T 2dpy_A 59 LFLMPL-EEVEGILPGARVYARNGH 82 (438)
T ss_dssp EEEEES-SCCTTCCTTEEEEEC---
T ss_pred EEEEEC-CCCCCCCCCCEEEECCCC
T ss_conf 999988-888788999999967985
No 13
>3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3kzi_T* 3a0b_T* 3a0h_T*
Probab=41.78 E-value=11 Score=14.07 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999998625444677
Q gi|254780140|r 11 GLFVVSILFFSFFSIYWLSRSNQYDG 36 (452)
Q Consensus 11 G~fvi~~~~~~~~~~~~~~~~~~~~~ 36 (452)
=+|+++.++.++++.++|....+..+
T Consensus 6 yv~i~acii~lfffaiffre~p~i~k 31 (32)
T 3bz1_T 6 YVFIFACIIALFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 58999999999999998437987677
No 14
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=37.26 E-value=13 Score=13.60 Aligned_cols=20 Identities=20% Similarity=0.477 Sum_probs=10.2
Q ss_pred HHHHHCCCCCCCCCCCCCCC
Q ss_conf 88861188877745426898
Q gi|254780140|r 433 PQDIVWGREKGSVKIYKPKH 452 (452)
Q Consensus 433 p~~li~g~~~~~~~~~~~~~ 452 (452)
|..-+..=++.-+.+|.|+|
T Consensus 446 ~~~~~~~~~~~~i~~~~~~~ 465 (469)
T 2c61_A 446 PENQLGRIDNKYIQKYHPAH 465 (469)
T ss_dssp CGGGCTTSCHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 89988788899999985653
No 15
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC; 2.10A {Desulfovibrio gigas}
Probab=31.87 E-value=5.9 Score=16.01 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63278999999999999999999998
Q gi|254780140|r 2 ESKNYYTSVGLFVVSILFFSFFSIYW 27 (452)
Q Consensus 2 ~~~~~~~~vG~fvi~~~~~~~~~~~~ 27 (452)
+.|--..|+|||+++++++++++-.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (560)
T 1z1n_X 3 QRKRAARWVGIPCAILFLTVPFISAT 28 (560)
T ss_dssp --------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50478999999999999999988874
No 16
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.91 E-value=14 Score=13.26 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCH
Q ss_conf 668980789007433798888648886079999997489724688469997423210
Q gi|254780140|r 52 LSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAG 108 (452)
Q Consensus 52 L~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g 108 (452)
+....++. ++|+|.+|- + ..+.+.- .....++..++......+-.+|
T Consensus 19 v~~~~~i~----~iG~v~~iv---~--~~vvIks-~~~~~~L~~~Svl~~~~~~~iG 65 (103)
T 2eqn_A 19 LPEDIELK----PLGMVSSII---E--QLVIIES-MTNLPPVNEETVIFKSDRQAAG 65 (103)
T ss_dssp CCTTSCCE----EEEEEEEEC---S--SSEEEEE-CSSCCCCCTTCEEECTTSBEEE
T ss_pred CCCCCEEE----EEEEEEEEE---C--CEEEEEE-CCCCCCCCCCCEEEECCCCEEE
T ss_conf 69998788----728998981---8--8699997-8998675378999958996878
No 17
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=27.85 E-value=18 Score=12.56 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=30.0
Q ss_pred CCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCC-CCCCCCCEEEEEECCCCHH
Q ss_conf 668980789007433798888648886079999997489-7246884699974232102
Q gi|254780140|r 52 LSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPD-TPLYPSTTATIRTQGLAGI 109 (452)
Q Consensus 52 L~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~-~~i~~~~~~~i~~~~l~g~ 109 (452)
|....++. ++|+|.+|- + ..++|....... .++-.+|...+..+-.+|-
T Consensus 24 i~~~~~i~----~iG~I~siv---d--~~ViI~s~~s~~~~vLd~~SvLcledr~~iG~ 73 (131)
T 2v3m_A 24 ISEKTIIT----PIGVLKSAF---E--NNIIIHATMSGEKRVLKEGSIFCLEDRTLIGM 73 (131)
T ss_dssp CCTTSCEE----EEEEEEEEE---T--TEEEEEEC-----CCCCTTCEEEETTCCEEEE
T ss_pred CCCCCEEE----ECCEEEEEE---C--CEEEEEEECCCCCEEECCCCEEEECCCCEEEE
T ss_conf 39998666----741398980---7--86999983688840143777899708948899
No 18
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.86 E-value=19 Score=12.44 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q gi|254780140|r 409 QNLVRKLQETVNHFDDCL 426 (452)
Q Consensus 409 ~~~~~~~~~~~~~l~~~~ 426 (452)
+.+..++.+.+.....+-
T Consensus 94 ~kL~~~F~~~l~~fq~~Q 111 (130)
T 2dnx_A 94 ERLMNDFSAALNNFQAVQ 111 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 19
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=25.15 E-value=20 Score=12.23 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=5.7
Q ss_pred EEEEEEEE-EEEECCC
Q ss_conf 07433798-8886488
Q gi|254780140|r 62 GIPVGRIV-GLFLDQE 76 (452)
Q Consensus 62 Gv~VG~V~-~I~l~~~ 76 (452)
++++|+.. .+-++++
T Consensus 79 ~l~~g~~~yt~~ln~~ 94 (401)
T 1v5v_A 79 KPPAISGTYTLVLNER 94 (401)
T ss_dssp SSCSSEEEEEEEECTT
T ss_pred CCCCCCEEEEEEECCC
T ss_conf 6889848999898799
No 20
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=22.92 E-value=22 Score=11.95 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999862544467
Q gi|254780140|r 14 VVSILFFSFFSIYWLSRSNQYD 35 (452)
Q Consensus 14 vi~~~~~~~~~~~~~~~~~~~~ 35 (452)
+++|++++...++.+...+++.
T Consensus 19 v~~GlLlL~ll~~~LwK~GFFK 40 (54)
T 2knc_A 19 VLGGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999827312
No 21
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=22.07 E-value=23 Score=11.83 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=38.3
Q ss_pred CCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCC
Q ss_conf 75676689807890074337988886488860799999974897246884699974232102332101465
Q gi|254780140|r 48 SVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLR 118 (452)
Q Consensus 48 ~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g~~~i~~~~~~ 118 (452)
+..+|.+|+.|++.|-..|.|.-|-.-+..++. .+=+++| .|..+. ...+-|.+|....++.
T Consensus 13 ~~~~~~vG~rV~v~~~~~G~VryiG~~~~~~g~-~vGVelD--~p~Gk~------dG~~~G~rYF~c~~~~ 74 (95)
T 2cp0_A 13 SALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQ-WVGVELD--EPEGKN------DGSVGGVRYFICPPKQ 74 (95)
T ss_dssp HHHTCCTTCEEEETTTEEEEEEEEECCSSSCSC-EEEEEES--SSCCSB------CSEETTEECCCCSSSC
T ss_pred CCCCCCCCCEEEECCCCEEEEEEEEECCCCCCE-EEEEEEC--CCCCCC------CCEECCEEEEECCCCC
T ss_conf 015881399999899727999995426898975-9999979--889887------9899999988469991
No 22
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=21.69 E-value=24 Score=11.78 Aligned_cols=26 Identities=4% Similarity=0.073 Sum_probs=19.2
Q ss_pred CCCCCCCCEEEEEEEEEEEEEEEEECC
Q ss_conf 567668980789007433798888648
Q gi|254780140|r 49 VDGLSTDSSVRFNGIPVGRIVGLFLDQ 75 (452)
Q Consensus 49 v~GL~~gspV~~~Gv~VG~V~~I~l~~ 75 (452)
.-||..|++|+++|=+. .|-.+...+
T Consensus 33 ~Lgl~~GD~V~I~G~r~-T~a~v~~~~ 58 (185)
T 1cz4_A 33 LLDAEIGDVVEIEKVRK-TVGRVYRAR 58 (185)
T ss_dssp TTCCCTTCEEEEESSSE-EEEEEEECS
T ss_pred HCCCCCCCEEEEECCCC-EEEEEEECC
T ss_conf 86999999899975882-589999657
No 23
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=21.03 E-value=24 Score=11.69 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=38.9
Q ss_pred CCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCC
Q ss_conf 75676689807890074337988886488860799999974897246884699974232102332101465
Q gi|254780140|r 48 SVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLR 118 (452)
Q Consensus 48 ~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g~~~i~~~~~~ 118 (452)
...+|.+|+.|++.+...|.|.-|-.-+...+ ..+=++.|. |+.+. ...+-|..|....|+.
T Consensus 4 ~~~~~~vG~rV~v~~~~~G~VryiG~~~~~~g-~~vGVelD~--p~Gk~------dG~~~G~rYF~C~p~~ 65 (84)
T 2cp3_A 4 GSSGLRLGDRVLVGGTKTGVVRYVGETDFAKG-EWCGVELDE--PLGKN------DGAVAGTRYFQCPPKF 65 (84)
T ss_dssp SSCSCCTTCEEEETTTEEEEEEEEEECSSSSS-EEEEEEESS--SCCSB------SSEETTEESSCCCTTT
T ss_pred CCCCCEECCEEEECCCCEEEEEEEECCCCCCC-CEEEEEECC--CCCCC------CCEECCEEEEECCCCE
T ss_conf 66773338999989984799999410689897-099999688--88887------9999999988579991
Done!