Query gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 452
No_of_seqs 295 out of 2333
Neff 11.7
Searched_HMMs 13730
Date Sun May 22 16:55:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780140.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lvfa_ a.47.2.1 (A:) Syntaxin 71.8 2 0.00015 17.5 5.5 24 370-393 45-68 (106)
2 d1wosa1 b.44.2.1 (A:279-361) G 41.4 6.5 0.00047 14.0 6.9 41 51-92 13-53 (83)
3 d1pj5a1 b.44.2.1 (A:743-830) N 38.0 7.3 0.00053 13.7 8.0 56 47-105 10-66 (88)
4 d1xmec1 f.23.9.1 (C:2-34) Bact 31.5 9.2 0.00067 13.0 3.1 23 10-32 5-27 (33)
5 d1v5va1 b.44.2.1 (A:313-401) G 29.2 10 0.00073 12.7 6.7 50 52-103 14-63 (89)
6 d2vv5a1 b.38.1.3 (A:113-179) M 22.4 13 0.00096 11.9 1.5 22 52-74 18-39 (67)
7 d2cp0a1 b.34.10.1 (A:7-89) CLI 20.3 14 0.0011 11.6 3.5 61 48-117 7-67 (83)
8 d2cp6a1 b.34.10.1 (A:8-167) Re 19.6 15 0.0011 11.5 4.9 61 50-119 30-90 (160)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 16.5 18 0.0013 11.0 3.3 22 12-33 7-28 (30)
10 d1e32a1 b.52.2.3 (A:21-106) Me 14.1 20 0.0015 10.6 3.0 53 51-103 30-84 (86)
No 1
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=71.78 E-value=2 Score=17.55 Aligned_cols=24 Identities=8% Similarity=0.226 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254780140|r 370 KDAQRAMHTFRDTSEKINRYIPSI 393 (452)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~ 393 (452)
.++...+.+++..++.+...+.-+
T Consensus 45 ~eL~~~l~siewdL~dLe~av~~v 68 (106)
T d1lvfa_ 45 NELRNNLRSIEWDLEDLDETISIV 68 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999996899999999999
No 2
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=41.44 E-value=6.5 Score=14.04 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf 766898078900743379888864888607999999748972
Q gi|254780140|r 51 GLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTP 92 (452)
Q Consensus 51 GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~ 92 (452)
=+..|.||+..|-.||.|++-.+.|.- ++.+....++.+..
T Consensus 13 ~~~~g~~I~~~g~~VG~vTSg~~Sp~l-~k~Iala~i~~~~~ 53 (83)
T d1wosa1 13 IARKGYEVLKNGERVGEITSGNFSPTL-GKSIALALVSKSVK 53 (83)
T ss_dssp CCCTTCEEEETTEEEEEEEEEEEETTT-TEEEEEEEEETTCC
T ss_pred CCCCCCEEEECCEEEEEEECCCCCCCC-CCEEEEEEECHHHC
T ss_conf 799999998899999888576099978-96389999785556
No 3
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=38.01 E-value=7.3 Score=13.68 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=36.0
Q ss_pred CCCCCC-CCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECC
Q ss_conf 875676-68980789007433798888648886079999997489724688469997423
Q gi|254780140|r 47 GSVDGL-STDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQG 105 (452)
Q Consensus 47 ~~v~GL-~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~ 105 (452)
++-..+ .-+.||+..|-.||.|++-.+.|.- ++.+..-.++.+.. .+..+.|...+
T Consensus 10 d~~~~~~~g~epI~~~g~~VG~vTS~~~Sp~l-~k~Iala~v~~~~~--~g~~~~V~~~g 66 (88)
T d1pj5a1 10 DDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTV-AKPIAYSYLPGTVS--VGDSVDIEYFG 66 (88)
T ss_dssp TTSCCCCCSCCEEEETTEEEEECCSEEEETTT-TEEEEEEEEETTCC--TTCEEEEEETT
T ss_pred ECCCCCCCCCCEEEECCEEEEEEECCEECCHH-CCCEEEEEEECCCC--CCCEEEEEECC
T ss_conf 78985768998599899899999787297246-04369999703768--99999999999
No 4
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=31.49 E-value=9.2 Score=12.98 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999862544
Q gi|254780140|r 10 VGLFVVSILFFSFFSIYWLSRSN 32 (452)
Q Consensus 10 vG~fvi~~~~~~~~~~~~~~~~~ 32 (452)
+|..-+..+..+..+++||+...
T Consensus 5 ~gal~vi~il~l~ilvfw~gv~a 27 (33)
T d1xmec1 5 KGALAVILVLTLTILVFWLGVYA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30579999999999999999999
No 5
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.23 E-value=10 Score=12.72 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 6689807890074337988886488860799999974897246884699974
Q gi|254780140|r 52 LSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRT 103 (452)
Q Consensus 52 L~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~ 103 (452)
...|.||...|-.||.|++-.+.|.- ++-+..-.++.+.. ..+..+.+..
T Consensus 14 ~~~g~~I~~~g~~VG~vTSg~~Sp~l-~~~Iala~v~~~~~-~~g~~v~v~i 63 (89)
T d1v5va1 14 PREGYKVYANGEMIGEVTSGTLSPLL-NVGIGIAFVKEEYA-KPGIEIEVEI 63 (89)
T ss_dssp CCTTCEEEETTEEEEEEEEEEECTTT-CSEEEEEEEEGGGC-STTCEEEEEE
T ss_pred CCCCCEEEECCEEEEEEECCCCCCCC-CCEEEEEEECHHHC-CCCCEEEEEE
T ss_conf 89999898899999998257698857-95499999988896-9999999999
No 6
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}
Probab=22.38 E-value=13 Score=11.88 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=15.0
Q ss_pred CCCCCEEEEEEEEEEEEEEEEEC
Q ss_conf 66898078900743379888864
Q gi|254780140|r 52 LSTDSSVRFNGIPVGRIVGLFLD 74 (452)
Q Consensus 52 L~~gspV~~~Gv~VG~V~~I~l~ 74 (452)
..+|+-|++.|. .|+|.+|.+.
T Consensus 18 f~vGD~I~i~~~-~G~V~~I~l~ 39 (67)
T d2vv5a1 18 FRAGEYVDLGGV-AGTVLSVQIF 39 (67)
T ss_dssp SCTTCEEESSSC-EEEEEEECSS
T ss_pred CCCCCEEEECCE-EEEEEEEECE
T ss_conf 328999999998-9999999543
No 7
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.32 E-value=14 Score=11.59 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=37.5
Q ss_pred CCCCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCC
Q ss_conf 7567668980789007433798888648886079999997489724688469997423210233210146
Q gi|254780140|r 48 SVDGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTL 117 (452)
Q Consensus 48 ~v~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g~~~i~~~~~ 117 (452)
++.+|.+|+.|.+.|-..|.|.-|-.-+..++ .-+=++.| .|+..+ ...+-|.+|....|+
T Consensus 7 s~~~l~vG~rV~v~~~~~G~vryvG~~~~~~g-~~vGVElD--~p~Gkn------dGt~~G~rYF~C~~~ 67 (83)
T d2cp0a1 7 SALGLRLGDRVLLDGQKTGTLRFCGTTEFASG-QWVGVELD--EPEGKN------DGSVGGVRYFICPPK 67 (83)
T ss_dssp HHHTCCTTCEEEETTTEEEEEEEEECCSSSCS-CEEEEEES--SSCCSB------CSEETTEECCCCSSS
T ss_pred EECCCCCCCEEEECCCCEEEEEEEEECCCCCC-CEEEEEEC--CCCCCC------CCEECCEEEEECCCC
T ss_conf 70488109999989985699999521598787-69999978--889877------999999998546999
No 8
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.57 E-value=15 Score=11.48 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=38.9
Q ss_pred CCCCCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCCC
Q ss_conf 6766898078900743379888864888607999999748972468846999742321023321014653
Q gi|254780140|r 50 DGLSTDSSVRFNGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRK 119 (452)
Q Consensus 50 ~GL~~gspV~~~Gv~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~~~l~g~~~i~~~~~~~ 119 (452)
..|.+|+.|.+.|-..|.|.-|-.-....| .-+=++++. +..++ ...+-|..|+...++..
T Consensus 30 ~~~~vGdrV~v~g~~~G~vr~iG~~~~~~G-~wvGVELd~--p~GKN------dGsv~G~~YF~c~~~~G 90 (160)
T d2cp6a1 30 RELKIGDRVLVGGTKAGVVRFLGETDFAKG-EWCGVELDE--PLGKN------DGAVAGTRYFQCQPKYG 90 (160)
T ss_dssp SCCCSSCEEEETTTEEEEEEEEEECSSSSS-EEEEEEESS--SCCSB------SSEETTEECCCCCTTTE
T ss_pred CCCCCCCEEEECCCCEEEEEEECCCCCCCC-CEEEEEECC--CCCCC------CCEECCEEEEECCCCCE
T ss_conf 787408988989997189998355688788-789889478--88877------88799997323599945
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.46 E-value=18 Score=11.00 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999998625444
Q gi|254780140|r 12 LFVVSILFFSFFSIYWLSRSNQ 33 (452)
Q Consensus 12 ~fvi~~~~~~~~~~~~~~~~~~ 33 (452)
+|+++.++.++++.++|..-.+
T Consensus 7 v~ifac~i~lfffaiffreppr 28 (30)
T d2axtt1 7 VFIFACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7999999999999998448988
No 10
>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.09 E-value=20 Score=10.59 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEE--EEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 7668980789007--4337988886488860799999974897246884699974
Q gi|254780140|r 51 GLSTDSSVRFNGI--PVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRT 103 (452)
Q Consensus 51 GL~~gspV~~~Gv--~VG~V~~I~l~~~~~~~v~v~~~i~~~~~i~~~~~~~i~~ 103 (452)
||..|++|.++|= .+-.|--.....-+.+.+++.=.+....-+..+-.+.|..
T Consensus 30 gl~~GD~V~I~Gkr~t~av~~~~~~~d~~~g~Irid~~~R~Nagv~iGD~V~V~p 84 (86)
T d1e32a1 30 QLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP 84 (86)
T ss_dssp TCCTTCEEEEECSTTCEEEEEEEECTTSCSSEEEECHHHHHHTTCCTTCEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEEE
T ss_conf 9999999999727750399999665778899899638998556968999999996
Done!