BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780140|ref|YP_003064553.1| putative ABC transporter,
substrate-binding protein [Candidatus Liberibacter asiaticus str.
psy62]
(452 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/452 (100%), Positives = 452/452 (100%)
Query: 1 MESKNYYTSVGLFVVSILFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF 60
MESKNYYTSVGLFVVSILFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF
Sbjct: 1 MESKNYYTSVGLFVVSILFFSFFSIYWLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRF 60
Query: 61 NGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE 120
NGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE
Sbjct: 61 NGIPVGRIVGLFLDQEYPNHSLAKALIRPDTPLYPSTTATIRTQGLAGITYIELSTLRKE 120
Query: 121 KKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTI 180
KKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTI
Sbjct: 121 KKTIFQIATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTI 180
Query: 181 ANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVN 240
ANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVN
Sbjct: 181 ANIETISTVLANNISHIDKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIKAIDLQKVN 240
Query: 241 QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF 300
QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF
Sbjct: 241 QILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAF 300
Query: 301 LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNIS 360
LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNIS
Sbjct: 301 LENIADSTSNMRSSISAIREITDQRQKIISTINTIENITSNLNDSSQKFAELMSKINNIS 360
Query: 361 ALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVN 420
ALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVN
Sbjct: 361 ALKENNSLFKDAQRAMHTFRDTSEKINRYIPSIGNNLQNFSQSGLNDIQNLVRKLQETVN 420
Query: 421 HFDDCLNNFERNPQDIVWGREKGSVKIYKPKH 452
HFDDCLNNFERNPQDIVWGREKGSVKIYKPKH
Sbjct: 421 HFDDCLNNFERNPQDIVWGREKGSVKIYKPKH 452
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1828
Score = 32.3 bits (72), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 27/244 (11%)
Query: 136 MITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVLANNIS 195
+I+ +N T+ +I++++ HI ++ K I ++ IS V +S
Sbjct: 1340 IISDATDSLNKVDERLHQTTNRITETTGHIDTVLAESSKLFEKKIKDLGEISRVSLLQMS 1399
Query: 196 HI-DKMMHTTQVTPHSSDSKNTFNTITDLITSLDKMIK-AIDL--------QKVNQILEN 245
I K +Q+ S DS + T L SLDK +DL + + + +
Sbjct: 1400 EIVSKFDKNSQILIKSHDSLMKAQSETKL--SLDKDANNLVDLTSRLVSKSSEAQKFVMS 1457
Query: 246 IQVSSNNFVKSSDQVINTVHDVRETTQTFQEVGQKIDHLLSDFSSKMKSKETSAFLE-NI 304
I V V+ +D + +TV V+ T + Q KID LS+ ++ S++T ++ N+
Sbjct: 1458 ILVDVKKIVEQADFLSDTV--VKNMTDSIQSSFIKIDGTLSNIETR--SRDTVRLIDHNL 1513
Query: 305 AD----STSNMRSSISAIREIT-----DQRQKIISTINTIENITSNLND-SSQKFAELMS 354
AD + + S+ ++E + RQKI STI IENI S L + S Q +
Sbjct: 1514 ADIGNKTVKTIDSNFVTLKEKSYDLSNHMRQKICSTIPNIENIFSTLEEKSDQSMQVFLD 1573
Query: 355 KINN 358
+NN
Sbjct: 1574 SLNN 1577
Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 145 NYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETISTVL--------ANNISH 196
+ F +NA+ + + S +I+ + I K + +I ++ETIST L ++ ++H
Sbjct: 742 DLFSNNAKRMEELLHSGSANIESELSAISKAMNKSIDDVETISTALKERCQELGSDLVNH 801
Query: 197 IDKMM 201
DK++
Sbjct: 802 SDKVL 806
Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 75/148 (50%), Gaps = 19/148 (12%)
Query: 219 TITDLITSLDKMIKAIDLQ-KVNQILENIQVSSNNFVKSSDQVINTVHDVRETTQTFQEV 277
T+ D++ SL I LQ K + N++ +++N ++ D NT+ + T +E+
Sbjct: 417 TLNDVLQSL-----RISLQEKEDSFCSNLKSTTDNTLREVDNRTNTLEN--RITAFLKEI 469
Query: 278 GQKIDHLLSDFSSKMKSKETSAFLENIADSTSNMRSSISAIREITDQRQKIISTI--NTI 335
+ ++ ++DFSS K +N+++ SN++ +I ++ + + + I
Sbjct: 470 VETFNNSITDFSSFYK--------DNLSEFESNLQGNIDKLQGCFADSHGNMEDLFLSNI 521
Query: 336 ENITSNLNDSSQKFAELMSKI-NNISAL 362
+ I SNL+ + F +++SK NNIS +
Sbjct: 522 QTIGSNLDKKTLLFEDILSKKQNNISQI 549
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 26.6 bits (57), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 102 RTQGLAGITYIELSTLR 118
RT+GL G+TY ++ LR
Sbjct: 330 RTEGLGGVTYDQIKQLR 346
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 27 WLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRFN 61
++S +++ P+ + IRI GS D +S D ++R+N
Sbjct: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
asiaticus str. psy62]
Length = 480
Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 148 ISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANI 183
I NAE + + S+R +QKI + +K + I+N+
Sbjct: 128 IDNAEEVVQNFNTSAREVQKIRADADKEIELEISNL 163
>gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 673
Score = 24.3 bits (51), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 128 ATERNQRAMITATPSGINYFISNAENTSKKISDSSRHIQKIIENIEKPLTTTIANIETIS 187
A E+N++ + T + F + E+ ++ D I + +KP + IE I
Sbjct: 295 AVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQD----IHSDVREQQKPAKPRLDLIEKIG 350
Query: 188 TVLANNISHIDKMMHTTQVTPHSSDS-------KNTFNTITDLIT 225
L N SH+ +M + ++S+ +N I DL+T
Sbjct: 351 ERLGNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVT 395
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 23.5 bits (49), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 423 DDCLNNFERNPQDIVWGREKGSVKI 447
D L+N E+N +V+G+E+ K+
Sbjct: 465 DSVLSNLEKNLGTVVYGQEEAIKKL 489
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.129 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,727
Number of Sequences: 1233
Number of extensions: 10565
Number of successful extensions: 70
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 34
length of query: 452
length of database: 328,796
effective HSP length: 77
effective length of query: 375
effective length of database: 233,855
effective search space: 87695625
effective search space used: 87695625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)