Query gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 208
No_of_seqs 115 out of 533
Neff 8.8
Searched_HMMs 39220
Date Sun May 22 12:00:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780141.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3218 ABC-type uncharacteriz 100.0 2.1E-35 5.3E-40 218.9 18.5 191 14-204 11-205 (205)
2 pfam03886 DUF330 Protein of un 100.0 1.4E-29 3.5E-34 186.0 20.5 144 52-196 15-160 (160)
3 COG3009 Uncharacterized protei 100.0 8.8E-28 2.2E-32 175.9 19.2 181 18-200 5-187 (190)
4 PRK11627 hypothetical protein; 98.7 4.7E-06 1.2E-10 53.1 17.8 169 8-197 1-179 (192)
5 COG3056 Uncharacterized lipopr 97.7 0.0032 8.2E-08 37.1 13.1 156 21-197 23-191 (204)
6 pfam05643 DUF799 Putative bact 96.9 0.016 4E-07 33.2 9.5 75 122-197 104-181 (215)
7 pfam09927 DUF2159 Predicted se 96.8 0.032 8E-07 31.5 15.3 102 92-203 9-119 (120)
8 pfam03923 Lipoprotein_16 Uncha 96.3 0.073 1.9E-06 29.5 11.1 126 54-197 15-150 (159)
9 pfam03783 CsgG Curli productio 96.3 0.074 1.9E-06 29.4 14.3 120 78-197 20-196 (207)
10 COG5468 Predicted secreted (pe 95.9 0.12 3E-06 28.3 16.9 95 93-195 48-161 (172)
11 pfam11769 DUF3313 Protein of u 95.2 0.2 5.2E-06 26.9 10.8 162 25-196 2-201 (202)
12 COG1462 CsgG Uncharacterized p 94.3 0.35 8.9E-06 25.6 13.6 87 84-170 58-179 (252)
13 PRK02889 tolB translocation pr 93.3 0.53 1.4E-05 24.6 14.5 88 93-197 52-153 (430)
14 COG4380 Uncharacterized protei 92.9 0.62 1.6E-05 24.2 7.1 169 16-197 4-182 (216)
15 PRK12700 flgH flagellar basal 92.1 0.24 6.1E-06 26.5 4.2 26 9-34 2-27 (230)
16 PRK13731 conjugal transfer sur 86.8 2.1 5.4E-05 21.2 6.0 95 16-136 8-102 (243)
17 PRK04405 prsA peptidylprolyl i 83.6 1.7 4.4E-05 21.7 3.9 29 5-34 1-29 (298)
18 PRK05137 tolB translocation pr 81.6 3.6 9.2E-05 19.9 14.5 69 93-167 54-139 (437)
19 PRK00178 tolB translocation pr 80.9 3.8 9.7E-05 19.8 10.6 87 93-197 50-152 (433)
20 PRK12696 flgH flagellar basal 80.8 2.2 5.6E-05 21.1 3.6 20 8-31 1-20 (238)
21 PRK13684 Ycf48-like protein; P 80.7 1.5 3.9E-05 22.0 2.8 26 1-31 1-26 (333)
22 PRK01326 prsA foldase protein 79.9 2.7 6.9E-05 20.6 3.9 27 9-35 1-27 (310)
23 PRK02998 prsA peptidylprolyl i 79.7 1.9 5E-05 21.4 3.1 26 8-33 1-26 (283)
24 COG3317 NlpB Uncharacterized l 79.4 4.3 0.00011 19.5 7.9 29 55-91 73-101 (342)
25 PRK11063 metQ DL-methionine tr 78.8 3.7 9.3E-05 19.9 4.2 30 14-43 8-37 (271)
26 COG3417 FlgN Collagen-binding 78.6 3 7.6E-05 20.4 3.7 22 19-40 10-31 (200)
27 PRK12407 flgH flagellar basal 78.5 2.1 5.3E-05 21.3 2.9 15 19-33 6-20 (220)
28 PRK02944 OxaA-like protein pre 77.7 2.6 6.7E-05 20.7 3.3 24 9-32 1-24 (255)
29 PRK09859 multidrug efflux syst 76.6 4.4 0.00011 19.4 4.1 18 62-79 77-94 (385)
30 PRK10802 peptidoglycan-associa 73.6 6.3 0.00016 18.6 7.7 26 3-33 1-26 (173)
31 PRK12699 flgH flagellar basal 72.1 3.8 9.6E-05 19.8 2.9 27 8-34 12-38 (246)
32 PRK11459 multidrug resistance 72.1 3 7.6E-05 20.4 2.3 26 8-33 1-26 (478)
33 PRK04922 tolB translocation pr 71.7 6.9 0.00018 18.3 13.0 68 94-167 55-138 (439)
34 TIGR03352 VI_chp_3 type VI sec 71.5 4.9 0.00012 19.2 3.3 74 19-109 6-85 (146)
35 TIGR03042 PS_II_psbQ_bact phot 70.7 4.9 0.00012 19.2 3.2 21 12-33 3-23 (142)
36 PRK12701 flgH flagellar basal 69.8 6.4 0.00016 18.5 3.6 21 8-31 1-21 (230)
37 PRK10866 outer membrane protei 69.6 5.2 0.00013 19.0 3.1 18 83-100 60-77 (243)
38 PRK04792 tolB translocation pr 68.9 8 0.0002 17.9 11.0 26 92-117 49-74 (450)
39 TIGR03659 IsdE heme ABC transp 68.7 7.5 0.00019 18.1 3.8 22 12-33 2-23 (289)
40 PRK01622 OxaA-like protein pre 67.2 7.9 0.0002 18.0 3.7 25 8-32 2-26 (266)
41 PRK12697 flgH flagellar basal 66.5 6.6 0.00017 18.4 3.1 19 15-33 10-28 (227)
42 PRK03002 prsA peptidylprolyl i 66.0 6.6 0.00017 18.4 3.1 24 10-33 2-25 (285)
43 PRK10510 putative outer membra 64.8 5.8 0.00015 18.7 2.6 24 9-32 1-24 (219)
44 PRK10477 outer membrane lipopr 64.5 6.5 0.00017 18.4 2.8 23 13-35 3-25 (177)
45 COG5510 Predicted small secret 64.3 5.6 0.00014 18.8 2.4 23 8-30 1-23 (44)
46 PRK00249 flgH flagellar basal 64.1 8.1 0.00021 17.9 3.2 19 16-34 6-24 (231)
47 PRK09578 periplasmic multidrug 63.6 9.4 0.00024 17.6 3.5 20 61-80 78-97 (385)
48 COG3017 LolB Outer membrane li 62.8 8.7 0.00022 17.7 3.2 42 63-104 83-127 (206)
49 COG2913 OlmA Outer membrane li 62.1 11 0.00028 17.2 3.9 64 11-76 5-79 (147)
50 PRK12450 foldase protein PrsA; 62.1 11 0.00028 17.2 4.3 23 13-35 7-29 (309)
51 PRK09967 putative outer membra 59.5 10 0.00026 17.4 3.0 26 160-186 126-151 (160)
52 PRK09915 putative outer membra 59.3 12 0.00031 16.9 3.6 25 7-33 4-28 (488)
53 PRK02463 OxaA-like protein pre 59.0 11 0.00027 17.2 3.1 22 12-33 7-28 (307)
54 TIGR02722 lp_ uncharacterized 57.0 8.7 0.00022 17.7 2.4 71 95-165 105-210 (215)
55 COG3065 Slp Starvation-inducib 56.2 12 0.0003 17.0 2.9 18 17-34 11-28 (191)
56 COG5616 Predicted integral mem 55.8 14 0.00036 16.5 6.9 87 93-193 43-144 (152)
57 COG2332 CcmE Cytochrome c-type 55.4 14 0.00037 16.5 4.8 66 1-70 1-67 (153)
58 PRK10760 murein hydrolase B; P 54.9 8.4 0.00021 17.8 2.0 17 20-36 8-24 (357)
59 COG5567 Predicted small peripl 54.0 13 0.00033 16.8 2.8 19 16-34 7-25 (58)
60 pfam08085 Entericidin Enterici 54.0 11 0.00028 17.2 2.5 22 9-30 1-22 (42)
61 TIGR02747 TraV type IV conjuga 52.7 9.1 0.00023 17.6 1.9 16 82-97 95-110 (174)
62 PRK13884 conjugal transfer pep 52.0 9.9 0.00025 17.4 2.0 40 5-44 1-49 (178)
63 TIGR00752 slp outer membrane l 48.3 9.3 0.00024 17.6 1.4 19 15-33 4-22 (190)
64 PRK10540 lipoprotein; Provisio 48.1 15 0.00038 16.4 2.4 28 8-35 3-30 (72)
65 PRK09534 btuF corrinoid ABC tr 47.1 20 0.0005 15.7 3.1 16 20-35 14-29 (364)
66 PRK13614 lipoprotein LpqB; Pro 45.3 21 0.00054 15.6 3.3 25 10-34 5-29 (573)
67 pfam05590 DUF769 Xylella fasti 43.7 10 0.00026 17.3 1.0 18 15-33 8-25 (279)
68 COG3521 Predicted component of 43.4 23 0.00057 15.4 8.6 77 16-104 7-88 (159)
69 PRK10153 DNA-binding transcrip 42.7 23 0.00059 15.4 15.9 97 85-195 209-309 (512)
70 PRK11653 hypothetical protein; 42.0 17 0.00043 16.1 1.9 28 13-40 21-48 (223)
71 PRK01742 tolB translocation pr 41.9 24 0.00061 15.3 10.2 23 94-116 52-74 (430)
72 COG4259 Uncharacterized protei 41.7 24 0.00061 15.3 2.7 16 20-35 13-28 (121)
73 pfam11684 DUF3280 Protein of u 41.6 24 0.00061 15.2 8.8 79 96-184 31-131 (140)
74 PRK00022 lolB outer membrane l 40.5 25 0.00064 15.1 7.4 46 61-106 78-126 (203)
75 pfam11254 DUF3053 Protein of u 40.4 18 0.00047 15.9 1.9 23 12-34 2-24 (229)
76 PRK06760 hypothetical protein; 39.4 10 0.00026 17.3 0.5 28 11-38 3-32 (223)
77 PRK06481 fumarate reductase fl 38.9 27 0.00068 15.0 3.1 23 11-33 3-25 (506)
78 PRK12370 invasion protein regu 36.8 29 0.00073 14.8 11.6 90 95-205 137-242 (553)
79 TIGR02521 type_IV_pilW type IV 36.4 22 0.00057 15.4 1.8 19 19-37 2-20 (247)
80 PRK11023 hypothetical protein; 36.0 25 0.00063 15.2 2.0 17 15-31 5-21 (191)
81 pfam03100 CcmE CcmE. CcmE is t 35.6 30 0.00077 14.7 5.1 64 1-68 1-64 (130)
82 PRK11548 hypothetical protein; 35.5 30 0.00077 14.7 3.1 55 19-75 10-75 (113)
83 PRK10838 spr putative outer me 33.8 32 0.00082 14.5 3.3 30 4-34 2-31 (188)
84 PRK04168 hypothetical protein; 33.0 33 0.00085 14.5 2.6 19 165-184 279-297 (336)
85 TIGR03044 PS_II_psb27 photosys 33.0 33 0.00085 14.5 3.6 17 92-108 111-127 (135)
86 TIGR02326 transamin_PhnW 2-ami 32.8 34 0.00086 14.4 2.4 20 175-194 243-262 (366)
87 PRK10722 hypothetical protein; 31.9 35 0.00088 14.4 2.7 19 17-35 19-37 (248)
88 COG5633 Predicted periplasmic 30.7 26 0.00067 15.0 1.4 15 20-34 8-22 (123)
89 COG4764 Uncharacterized protei 30.3 37 0.00095 14.2 2.2 24 179-202 171-194 (197)
90 TIGR02887 spore_ger_x_C germin 30.2 30 0.00078 14.7 1.6 18 16-33 5-22 (400)
91 TIGR03302 OM_YfiO outer membra 30.0 38 0.00096 14.2 2.4 18 16-33 4-21 (235)
92 pfam11810 DUF3332 Domain of un 29.5 35 0.0009 14.3 1.9 22 11-32 2-23 (175)
93 pfam10738 Lpp-LpqN Probable li 29.2 39 0.00099 14.1 2.4 21 14-34 9-29 (227)
94 PRK13254 cytochrome c-type bio 28.5 40 0.001 14.0 5.3 64 1-68 2-65 (149)
95 TIGR02898 spore_YhcN_YlaJ spor 28.3 40 0.001 14.0 2.0 19 16-34 4-22 (185)
96 PRK11260 cystine transporter s 27.9 41 0.001 13.9 3.2 18 176-193 229-246 (264)
97 PRK03095 prsA peptidylprolyl i 27.7 41 0.0011 13.9 2.8 23 9-33 1-23 (287)
98 COG4808 Uncharacterized protei 27.6 41 0.0011 13.9 2.5 72 13-99 7-79 (152)
99 PRK04043 tolB translocation pr 27.5 42 0.0011 13.9 7.9 70 92-167 44-124 (419)
100 COG4166 OppA ABC-type oligopep 27.4 42 0.0011 13.9 3.1 11 123-133 167-177 (562)
101 TIGR00865 bcl-2 Apoptosis regu 26.8 43 0.0011 13.8 2.1 37 158-203 148-184 (243)
102 PRK11289 ampC beta-lactamase; 25.2 46 0.0012 13.7 3.3 28 7-34 2-29 (387)
103 pfam05481 Myco_19_kDa Mycobact 24.6 13 0.00033 16.8 -1.1 25 8-32 1-25 (160)
104 pfam12262 Lipase_bact_N Bacter 24.2 48 0.0012 13.5 2.3 16 17-32 7-22 (269)
105 PRK11616 hypothetical protein; 24.0 40 0.001 14.0 1.4 88 10-108 2-97 (109)
106 pfam08816 Ivy Inhibitor of ver 23.9 48 0.0012 13.6 1.7 28 82-109 89-116 (118)
107 PRK09837 copper/silver efflux 23.7 49 0.0013 13.5 2.4 13 94-106 63-75 (460)
108 PRK10002 outer membrane protei 23.4 49 0.0012 13.5 1.7 17 8-24 1-17 (362)
109 TIGR02544 III_secr_YscJ type I 22.9 49 0.0013 13.5 1.6 92 15-109 3-127 (203)
110 PRK09973 putative outer membra 22.5 40 0.001 14.0 1.1 23 10-33 2-24 (85)
111 PRK09861 cytoplasmic membrane 22.3 53 0.0013 13.3 4.2 22 179-202 242-263 (272)
112 PRK13616 lipoprotein LpqB; Pro 21.8 54 0.0014 13.3 4.6 16 18-33 11-26 (590)
113 TIGR00032 argG argininosuccina 21.8 54 0.0014 13.3 3.0 25 85-109 331-355 (420)
114 PTZ00334 trans-sialidase; Prov 21.7 54 0.0014 13.3 3.4 24 8-31 39-62 (780)
115 PRK12698 flgH flagellar basal 21.3 55 0.0014 13.2 3.4 10 23-32 10-19 (224)
116 PRK10797 glutamate and asparta 20.5 57 0.0015 13.1 3.0 18 176-193 241-258 (302)
117 PRK11917 bifunctional adhesin/ 20.4 58 0.0015 13.1 2.5 23 8-30 2-24 (259)
118 pfam11659 DUF3261 Protein of u 20.1 59 0.0015 13.1 2.4 22 25-46 5-34 (154)
119 PRK10525 cytochrome o ubiquino 20.1 59 0.0015 13.1 3.0 36 3-47 1-36 (305)
No 1
>COG3218 ABC-type uncharacterized transport system, auxiliary component [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=218.92 Aligned_cols=191 Identities=32% Similarity=0.632 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC--CCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCC
Q ss_conf 999999999998630488999860797078887666--666662089815301200068637899469769981466012
Q gi|254780141|r 14 ISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDE--SVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWS 91 (208)
Q Consensus 14 ~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~--~~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~ 91 (208)
..+.+.+.++..|+||.+..+|.+.|.|...++..+ +....++|.+.+|+....+++++|+++.+++++.||.+.+|+
T Consensus 11 ~~l~~~la~~a~L~gC~~~~~p~~~~~l~~~~~~~~~~~~~~~~qllia~p~a~kal~s~rivV~~~~geiqy~~~a~W~ 90 (205)
T COG3218 11 LSLAAALALAATLAGCGPEAAPNDTYSLSVHPPVDSNGPKRKTWQLLIARPTALKALDSPRIVVRPSRGEIQYYAGAQWG 90 (205)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHHHCCCCCC
T ss_conf 99999999999972347778977446415788665777766541698537763220259866984286466785377436
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEEC--CCCEEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 568999999999999731694065037677788359999999999635--874799999999994578827789999999
Q gi|254780141|r 92 DKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINI--DRHCAIITMSLKIINAHDNSLVGQKVFHVE 169 (208)
Q Consensus 92 ~~p~~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~--~~~~a~i~~~~~l~~~~~~~~~~~~~f~~~ 169 (208)
+|++.|++.+|.+.++++|.+..+..+.++...||.|.++|+.||.+| ..++|+|++...|++.+++++++++.|+.+
T Consensus 91 d~~~~l~q~~l~~aFe~sg~~~gl~~~g~gL~aDy~l~~dlr~FE~~y~~~~~~A~Iei~v~Ll~~~n~~v~A~r~F~a~ 170 (205)
T COG3218 91 DPLPNLVQDRLVQAFEDSGRFAGLGRPGSGLAADYQLILDLRAFEIQYVTGAPTAVIEISVRLLNDRNGTVRASRVFRAS 170 (205)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEEHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEE
T ss_conf 85068999999999862385420258986505656543314345232258886389999988731688868887778986
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 95277998899999999999999999999997397
Q gi|254780141|r 170 EKLEKDNKLHFIQSLNRAFSRISSEIIDWTLSSLP 204 (208)
Q Consensus 170 ~~~~~~~~~~~v~Al~~Al~~l~~~ia~w~~~~~p 204 (208)
+|+++.+..+.|+||.+|+++++.||+.|+.++++
T Consensus 171 ~pv~g~~~~a~v~A~dkA~~q~~~EIV~Wtls~~~ 205 (205)
T COG3218 171 QPVDGKGNAAVVKAFDKAFAQLTNEIVGWTLSTLS 205 (205)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 01468983789999999999998887866550489
No 2
>pfam03886 DUF330 Protein of unknown function (DUF330). The proteins in this family are uncharacterized. The proteins are 170-190 amino residues in length.
Probab=99.97 E-value=1.4e-29 Score=186.03 Aligned_cols=144 Identities=19% Similarity=0.342 Sum_probs=134.2
Q ss_pred CCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCC--CCCCCEEEE
Q ss_conf 666208981530120006863789946976998146601256899999999999973169406503767--778835999
Q gi|254780141|r 52 QRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQ--GIYADYQII 129 (208)
Q Consensus 52 ~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~~~L~~~~~~~~v~~~~~--~~~~~~~L~ 129 (208)
.....|.|.+|.+|+|||+++|+++.++++++++++|||++||++||+++|.++|++.++...|...++ ...++|+|.
T Consensus 15 ~~~~~i~v~~V~lp~yLd~~~Iv~~~~~~~l~~~~~~rWaepl~~~i~~~L~~~L~~~l~~~~V~~~~~~~~~~~~~~L~ 94 (160)
T pfam03886 15 APAWQLEVGPVSVPDYLDRPQIVVRTGDGQLQVAENHRWAEPLDDQIRRALARDLSQRLPSARVAAPPWPLGGTPDYRLQ 94 (160)
T ss_pred CCCEEEEECCCCCHHHHCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEE
T ss_conf 87327997476706774888759995898899857885567778999999999999658986298368887888667999
Q ss_pred EEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999635874799999999994578827789999999952779988999999999999999999
Q gi|254780141|r 130 SAIRSFEINIDRHCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEII 196 (208)
Q Consensus 130 ~~I~~f~~~~~~~~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~Al~~Al~~l~~~ia 196 (208)
++|++|+.++++ ++++.++|++.+..+++++..+.|+.++|+.+++++++|+||++++++++++|+
T Consensus 95 v~i~~F~~~~~g-~~~l~~~w~l~~~~~~~~~~~~~f~~~~p~~~~~~~~lvaAl~~al~~la~~IA 160 (160)
T pfam03886 95 VDVQRFEGDPGG-TAVLSAQWRLLDAGGQRVLASRSFRISEPLAGDGYAALVAALSQALAQLADQIA 160 (160)
T ss_pred EEEEEEEEECCC-EEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999740797-499999999982899646777779999866889979999999999999999759
No 3
>COG3009 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.96 E-value=8.8e-28 Score=175.86 Aligned_cols=181 Identities=15% Similarity=0.223 Sum_probs=154.8
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHH
Q ss_conf 9999999863048899986079707888766-666666208981530120006863789946976998146601256899
Q gi|254780141|r 18 LAVLLCTSLSSCFFHNNPVNIYDLTESTKYD-ESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPR 96 (208)
Q Consensus 18 l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~-~~~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~ 96 (208)
+++.+++.|+||++..++.+||.|+...... +.......+.+.+|.+++||+++.||||++++++....+|+|++|++.
T Consensus 5 l~~~aal~L~~Cas~~p~~~~yqLp~~~~~~~~a~~g~r~l~v~~V~ladyL~~~giVyrtsd~q~~~a~nn~WA~pLd~ 84 (190)
T COG3009 5 LMIIAALLLAGCASGEPSKQYYQLPVAASAPVPASQGGRLLWVEPVRLADYLKRNGIVYRTSDVQLVIANNNRWASPLDQ 84 (190)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHCCCCEEEECCCHHEEEHHHCCCCCCHHH
T ss_conf 99999999875379998832897446556776502365438985100554424786599707740021310310140308
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCC-CCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCC
Q ss_conf 99999999997316940650376777-88359999999999635874799999999994578827789999999952779
Q gi|254780141|r 97 MIQLKLIANFENNGKISTVVKPNQGI-YADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKD 175 (208)
Q Consensus 97 ~l~~~L~~~L~~~~~~~~v~~~~~~~-~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~ 175 (208)
++++.|..+|++......|.+.+... ..-|+|.++|.+|++.|+| .++|...|.|.+ ..|.....+.|+.+.+..++
T Consensus 85 qL~q~L~~~ls~~l~~~~va~~p~~s~q~~~~l~vtv~rF~gry~g-~a~i~g~W~L~~-~~G~~~~~r~F~~e~eq~~~ 162 (190)
T COG3009 85 QLRQALSANLSRLLSGWVVAPAPASSGQDLYKLNVTVQRFDGRYTG-KAVISGEWRLLH-DKGQPLINRPFHLELEQQGD 162 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEEEEECCCCCC-CEEEEEEEEEEC-CCCCCCCCCCEEEEECCCCC
T ss_conf 9999999988765466466136688886307999999621573468-548999999745-66672115740366423478
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9889999999999999999999999
Q gi|254780141|r 176 NKLHFIQSLNRAFSRISSEIIDWTL 200 (208)
Q Consensus 176 ~~~~~v~Al~~Al~~l~~~ia~w~~ 200 (208)
++.++|+|++.++.+.+.+|+..+.
T Consensus 163 gyda~V~als~~~~Q~a~qia~~vk 187 (190)
T COG3009 163 GYDAMVRALSGGLKQLAAQIAEQVK 187 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7889999999999999999998620
No 4
>PRK11627 hypothetical protein; Provisional
Probab=98.74 E-value=4.7e-06 Score=53.15 Aligned_cols=169 Identities=11% Similarity=0.179 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 7789999999999999986304889998607970788876666--66662089815301200068637899469769981
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDES--VQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYL 85 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~~--~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~ 85 (208)
|||+.++. ++.++.|+||..+ | ++-.|.|....+.. ...+..+.|... +.=....|+-...++++...
T Consensus 1 ~mkk~~~~----l~a~~lL~gCas~--p-~~l~l~P~~~~~~~~~~~~~~~vsv~s~---D~R~~~~va~~~~~g~~~~L 70 (192)
T PRK11627 1 MLKKILFP----LVALFMLAGCATP--P-TTLEVSPKITLPQQDPSLMGVTVSINGA---DQRQDQALAKVTRDNQLVTL 70 (192)
T ss_pred CHHHHHHH----HHHHHHHHHHCCC--C-CEEEECCCCCCCCCCCCCCCEEEEEEEE---ECCCCCEEEEECCCCCEEEE
T ss_conf 92879999----9999999860699--7-6378678876643455457705999877---53665326798069946770
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEECCCCEEE----EEEEEEEE-ECCCCCE
Q ss_conf 466012568999999999999731694065037677788359999999999635874799----99999999-4578827
Q gi|254780141|r 86 IGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRHCAI----ITMSLKII-NAHDNSL 160 (208)
Q Consensus 86 ~~~rW~~~p~~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~~~~~a~----i~~~~~l~-~~~~~~~ 160 (208)
.-. .++..+++++|.+.|.+.|-. +. ..++..+.++|..|+.+.+.+... ...+..++ ....|.
T Consensus 71 ~~s---~~l~~~lq~~l~~ql~sqG~~--i~-----~~a~~~l~v~i~~l~a~V~q~~~~y~i~t~v~i~I~v~~~ng~- 139 (192)
T PRK11627 71 TPS---RDLRFLLQEVLEKQMTARGYM--IG-----PNGAVNLQIIVNQLYADVSQGNVRYNIATKADISIIATAQNGN- 139 (192)
T ss_pred CCC---CCHHHHHHHHHHHHHHHCCEE--EC-----CCCCCEEEEEHHHHCCCCCCCEEEEEECCEEEEEEEEECCCCC-
T ss_conf 478---688999999999999858817--15-----8876259999689316025550477752479999999837897-
Q ss_pred EEEEEEEEEEECC---CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899999999527---799889999999999999999999
Q gi|254780141|r 161 VGQKVFHVEEKLE---KDNKLHFIQSLNRAFSRISSEIID 197 (208)
Q Consensus 161 ~~~~~f~~~~~~~---~~~~~~~v~Al~~Al~~l~~~ia~ 197 (208)
..++.|..+...+ +.+.+.+-.++|+.++++..+|+.
T Consensus 140 k~tK~y~~~~~~eG~lsa~~~~Ie~~lN~~l~~vi~~I~~ 179 (192)
T PRK11627 140 KMTKNYRASYNVEGAFQASNKNIADAVNSVLTDTIADMAQ 179 (192)
T ss_pred EEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7778872322115677888899999999999999999873
No 5
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.0032 Score=37.14 Aligned_cols=156 Identities=10% Similarity=0.097 Sum_probs=85.2
Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCC--CCC--EEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHH
Q ss_conf 999986304889998607970788876666666--620--8981530120006863789946976998146601256899
Q gi|254780141|r 21 LLCTSLSSCFFHNNPVNIYDLTESTKYDESVQR--HIQ--LIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPR 96 (208)
Q Consensus 21 ~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~~~~~--~~~--i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~ 96 (208)
+..+.|+||..++ +.-...|+.+.....+. ..+ |...+.+...+ +.-.+.++++....-.+ ....
T Consensus 23 aa~~lLagC~a~~---~tl~~tpp~~~~sqn~v~~~~~vsit~kD~R~~q~-----vA~v~~~~~lv~L~as~---~vr~ 91 (204)
T COG3056 23 AAIFLLAGCAAPP---TTLIVTPPAPLPSQNPVLMGVTVSITGKDQRSDQA-----VAKVTRDNQLVKLTASR---DVRF 91 (204)
T ss_pred HHHHHHHHCCCCC---CEEECCCCCCCCCCCCHHCCEEEEEECCCCHHHHH-----HHHHHCCCCEEEECCCC---CHHH
T ss_conf 9999997537997---50313699766443723314189997055016678-----87620479789834781---3999
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEECCCC--------EEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 9999999999731694065037677788359999999999635874--------79999999999457882778999999
Q gi|254780141|r 97 MIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH--------CAIITMSLKIINAHDNSLVGQKVFHV 168 (208)
Q Consensus 97 ~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~~~~--------~a~i~~~~~l~~~~~~~~~~~~~f~~ 168 (208)
+++++|.+.|...| |.. . ......+.+.|++|+.+...+ .+.+...+ ....|+..++-+-+.
T Consensus 92 llq~vl~~q~~srG-fri-g-----~n~~~n~~i~V~qlya~V~qgnlryni~tkv~i~I~A---~~~~Gk~~Kny~at~ 161 (204)
T COG3056 92 LLQEVLEKQMTSRG-FRV-G-----PNGEVNLQITVDQLYADVEQGNLRYNIDTKVDITITA---TAANGKMVKNYRATY 161 (204)
T ss_pred HHHHHHHHHHHHCC-EEE-C-----CCCCCEEEEEHHHHHHHHHHCCEEECCCCEEEEEEEE---ECCCCCEEEEEEEEE
T ss_conf 99999999865343-675-3-----6898318998499663556331233025458899999---737871553245566
Q ss_pred EEE-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 995-27799889999999999999999999
Q gi|254780141|r 169 EEK-LEKDNKLHFIQSLNRAFSRISSEIID 197 (208)
Q Consensus 169 ~~~-~~~~~~~~~v~Al~~Al~~l~~~ia~ 197 (208)
... +=+.+-..+..++|.-++.+..+|+.
T Consensus 162 ~~~GafsAsN~eI~~vln~v~ndvi~~i~q 191 (204)
T COG3056 162 NVEGAFSASNDEIADVLNSVLNDVIADIAQ 191 (204)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 666554058867999999999999999853
No 6
>pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=96.87 E-value=0.016 Score=33.25 Aligned_cols=75 Identities=7% Similarity=0.208 Sum_probs=51.3
Q ss_pred CCCCEEEEEEEEEEEEECC--CCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 7883599999999996358--74799999999994578827789999999952779988999999-9999999999999
Q gi|254780141|r 122 IYADYQIISAIRSFEINID--RHCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSL-NRAFSRISSEIID 197 (208)
Q Consensus 122 ~~~~~~L~~~I~~f~~~~~--~~~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~Al-~~Al~~l~~~ia~ 197 (208)
..+|-.|=++|.+....|. ....+|.+.+.|++.++|+++.+.+-+.... .+++-.+++-++ +.+++|+++.+.+
T Consensus 104 FGADAvLYvtI~~ygt~Y~VisS~t~V~~~a~LvdlrTG~~LW~g~a~~~~~-~~~~~gGlig~Lv~Aav~Qi~~t~~D 181 (215)
T pfam05643 104 FGNDAVLYITVTEYGTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREG-SNNSNSGLLGALVGAVVNQIANSLTD 181 (215)
T ss_pred HCCCEEEEEEEECCCCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCC-CCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 3877689987102473799996237999999998456786765310340016-88888659999999999999864202
No 7
>pfam09927 DUF2159 Predicted secreted (periplasmic) protein (DUF2159). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.82 E-value=0.032 Score=31.53 Aligned_cols=102 Identities=10% Similarity=0.145 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEEC----CC----CEEEEEEEEEEEECCCCCEEEE
Q ss_conf 568999999999999731694065037677788359999999999635----87----4799999999994578827789
Q gi|254780141|r 92 DKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINI----DR----HCAIITMSLKIINAHDNSLVGQ 163 (208)
Q Consensus 92 ~~p~~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~----~~----~~a~i~~~~~l~~~~~~~~~~~ 163 (208)
+.....+++.|.+.|.. ..+..|.|+|.+.+..-.... ++ ....+...|.|++..+++++.+
T Consensus 9 ~R~g~~lr~~L~~rLg~----------g~~~~p~Y~L~v~~~~~~~~~~i~~~~~~tr~~~~~~a~y~L~d~~tg~~v~s 78 (120)
T pfam09927 9 GRQGQLLRNALEDRLGG----------GRPAAPRYRLSVRLDTSRESLGIRPDNDTTRYNLTGTATYTLVDLATGKVVAS 78 (120)
T ss_pred CCCHHHHHHHHHHHHCC----------CCCCCCCEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCEEEE
T ss_conf 93459999999998468----------99999728999999888864347048950799999999999998899979995
Q ss_pred EEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999527-799889999999999999999999999739
Q gi|254780141|r 164 KVFHVEEKLE-KDNKLHFIQSLNRAFSRISSEIIDWTLSSL 203 (208)
Q Consensus 164 ~~f~~~~~~~-~~~~~~~v~Al~~Al~~l~~~ia~w~~~~~ 203 (208)
........-. ..+.-+-..|...|-++++.++|+-|...+
T Consensus 79 G~~~~~tsy~~~~s~~A~~~A~~DA~~Rla~~lAd~I~~rL 119 (120)
T pfam09927 79 GTVTSFTSYDATGSTYATLAAERDAEERLARELADQIVTRL 119 (120)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 07999986747687899999999999999999999999862
No 8
>pfam03923 Lipoprotein_16 Uncharacterized lipoprotein. The function of this presumed lipoprotein is unknown. The family includes E. coli YajG.
Probab=96.27 E-value=0.073 Score=29.46 Aligned_cols=126 Identities=10% Similarity=0.138 Sum_probs=78.9
Q ss_pred CCCEEEECCCCCCCCCCCEEEEEECCCE-EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEE
Q ss_conf 6208981530120006863789946976-998146601256899999999999973169406503767778835999999
Q gi|254780141|r 54 HIQLIITEPITEKILNSEDIIVRSSPIE-IQYLIGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAI 132 (208)
Q Consensus 54 ~~~i~v~~~~~~~~l~~~~Iv~~~~~~~-~~~~~~~rW~~~p~~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I 132 (208)
..+|...+.+...| |.-...+++ +.... =..++..+|+++|.+.|...| |.. . ..++..+.++|
T Consensus 15 ~vsl~~~D~R~~~~-----va~v~~~~~~~~~l~---~s~~~~~~lq~al~~q~~s~G-~~i--~----~~a~~~l~v~i 79 (159)
T pfam03923 15 TVSLSTKDLRSAQY-----VARIDRGGKNATLLS---ASQSLRILLQQALQQQLTSQG-YRI--D----PNSNNNLQLQV 79 (159)
T ss_pred EEEEEEEECCCCCE-----EEEEECCCCEEEECC---CCCCHHHHHHHHHHHHHHHCC-EEE--C----CCCCCEEEEEH
T ss_conf 69998655266211-----789906994677748---887889999999999887467-685--6----89872599994
Q ss_pred EEEEEECCCCEE------EEEEEEEEEECCCCCEEEEEEEEEEEECC---CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999963587479------99999999945788277899999999527---799889999999999999999999
Q gi|254780141|r 133 RSFEINIDRHCA------IITMSLKIINAHDNSLVGQKVFHVEEKLE---KDNKLHFIQSLNRAFSRISSEIID 197 (208)
Q Consensus 133 ~~f~~~~~~~~a------~i~~~~~l~~~~~~~~~~~~~f~~~~~~~---~~~~~~~v~Al~~Al~~l~~~ia~ 197 (208)
..|+.+...+.. .+.+.... ....| ..++.|..+.... +.+.+.+-.++|+.++++..+|+.
T Consensus 80 ~~l~a~V~~~~~~y~~~~~i~I~v~a-~~~~g--~~tK~y~~~~~~~G~l~a~~~~Ie~~lN~~l~~vl~~I~n 150 (159)
T pfam03923 80 NELLADVKEGTFRYKINSKIQIEIIA-QTAKG--KFTKRYNARYTVEGPFSADNADIELALNKLLTDVLNDIAN 150 (159)
T ss_pred HHHEEECCCCCEEEEEEEEEEEEEEE-ECCCC--EEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88022303460578740079999999-97997--4988871316413576889899999999999999999972
No 9
>pfam03783 CsgG Curli production assembly/transport component CsgG. CsgG is an outer membrane-located lipoprotein that is highly resistant to protease digestion. During curli assembly, an adhesive surface fibre, CsgG is required to maintain the stability of CsgA and CsgB.
Probab=96.26 E-value=0.074 Score=29.44 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=83.1
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCC----------------------CCCCEEEEEEEEEE
Q ss_conf 69769981466012568999999999999731694065037677----------------------78835999999999
Q gi|254780141|r 78 SPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQG----------------------IYADYQIISAIRSF 135 (208)
Q Consensus 78 ~~~~~~~~~~~rW~~~p~~~l~~~L~~~L~~~~~~~~v~~~~~~----------------------~~~~~~L~~~I~~f 135 (208)
..++........|.....+....-|...|.+++.|..|...+.. ..++|.+.+.|..|
T Consensus 20 ~Tgq~k~~~~~~~s~~vtqg~~~~Li~aL~~tg~F~VvER~~l~~l~~E~~l~~~~~~~~~~~~~l~ga~~~i~G~It~~ 99 (207)
T pfam03783 20 QTGQYKPGNFSSFSDAVGQGASDILVTALQQSGWFTVLERENLDALLTERKIIRAGPNTAAQLGNLKGADYLIEGSITEF 99 (207)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 76884664642256301223999999999877991788437868889999987547656210355444888999367775
Q ss_pred EEECCC----------------CEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHH-------------------HH
Q ss_conf 963587----------------4799999999994578827789999999952779988-------------------99
Q gi|254780141|r 136 EINIDR----------------HCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKL-------------------HF 180 (208)
Q Consensus 136 ~~~~~~----------------~~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~-------------------~~ 180 (208)
+.+..+ ..+.+.+..++++.++++++.+...+.+..-.+.+.. .+
T Consensus 100 ~~n~~sgg~g~~~~Gig~~~~~~~~~V~vdLRlVdv~TgeVl~s~t~~k~i~s~~~~~~~f~~g~~~~~~~~g~~~nep~ 179 (207)
T pfam03783 100 GRNVSTGGGGAQYFGILGSGKYQVAYVKVDLRAVDVRTGEVLASVTGEGEASSSNREVGLFVSGFGLLAGYDGTTNNKPL 179 (207)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCEEECCCCCEEEEECCCCCCHH
T ss_conf 13322376565440223531699999999999997245279999998879999722322475035435774041158769
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780141|r 181 IQSLNRAFSRISSEIID 197 (208)
Q Consensus 181 v~Al~~Al~~l~~~ia~ 197 (208)
-.|.++|.++...++..
T Consensus 180 ~~Avr~aIe~aV~~li~ 196 (207)
T pfam03783 180 GLAIREAIEKAVEELIT 196 (207)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999986
No 10
>COG5468 Predicted secreted (periplasmic) protein [Function unknown]
Probab=95.86 E-value=0.12 Score=28.32 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEE-----C------C---CCEEEEEEEEEEEECCCC
Q ss_conf 6899999999999973169406503767778835999999999963-----5------8---747999999999945788
Q gi|254780141|r 93 KLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEIN-----I------D---RHCAIITMSLKIINAHDN 158 (208)
Q Consensus 93 ~p~~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~-----~------~---~~~a~i~~~~~l~~~~~~ 158 (208)
.-...+++.|+.-++.. ...+..+.|.|.+.+.+|-.. . + .+.+++..+|.|.+.++|
T Consensus 48 r~gqevRnqLifl~s~g--------aGePA~p~y~Lsl~vs~~a~~~~~~nv~~~~d~d~p~ag~v~mt~~y~Ltdak~G 119 (172)
T COG5468 48 RGGQEVRNQLIFLFSGG--------AGEPANPQYYLSLSVSRFARGVRLVNVGNDTDRDRPSAGRVVMTADYVLTDAKDG 119 (172)
T ss_pred HHHHHHHHHHHHHHCCC--------CCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCC
T ss_conf 58899999999996168--------9998882168998743103457887405655578987757999865898754788
Q ss_pred CEEEEEEEEEEEEC--CCCCHHHH---HHHHHHHHHHHHHHH
Q ss_conf 27789999999952--77998899---999999999999999
Q gi|254780141|r 159 SLVGQKVFHVEEKL--EKDNKLHF---IQSLNRAFSRISSEI 195 (208)
Q Consensus 159 ~~~~~~~f~~~~~~--~~~~~~~~---v~Al~~Al~~l~~~i 195 (208)
+++...+=.++... ....++.+ -.|-|+|..++++.|
T Consensus 120 ~~v~~Grr~vtas~D~p~QefA~irA~rDaenRAArElAe~i 161 (172)
T COG5468 120 AEVHKGRRSVTASFDRPRQEFAKIRAQRDAENRAARELAEII 161 (172)
T ss_pred CEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 776524315788734751478888887606778999999999
No 11
>pfam11769 DUF3313 Protein of unknown function (DUF3313). This a bacterial family of proteins which are annotated as putative lipoproteins.
Probab=95.19 E-value=0.2 Score=26.94 Aligned_cols=162 Identities=11% Similarity=0.171 Sum_probs=73.5
Q ss_pred HHHCCCCCCCCCEEEE--C-CC--CCCCCCCCCCCCCEEEEC-CCCCCCCCCCEEEEEECCCEEEEECCCCCCC------
Q ss_conf 8630488999860797--0-78--887666666662089815-3012000686378994697699814660125------
Q gi|254780141|r 25 SLSSCFFHNNPVNIYD--L-TE--STKYDESVQRHIQLIITE-PITEKILNSEDIIVRSSPIEIQYLIGSQWSD------ 92 (208)
Q Consensus 25 ~l~~c~~~~~p~~~Y~--L-~~--~~~~~~~~~~~~~i~v~~-~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~------ 92 (208)
.|+||++.++...-|. | +. ..+...+.....-..+.+ +.... | +.|++ ++..+..-.++.|..
T Consensus 2 ~laGCas~~~~~~~~sgfl~sy~~l~~~~~~~g~~~~rw~~p~~~~~~-Y--~~v~i--~Pv~~~~~~~~~~~~i~~~~~ 76 (202)
T pfam11769 2 LLAGCASKPPTPDEYSGFLKSYSGLEPGKSPSGRAVLRWVDPGVDLSQ-Y--DKVII--DPVEVYPGPDPTFQRVSQEDL 76 (202)
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCHHH-C--CEEEE--EEEEEEECCCCCCCCCCHHHH
T ss_conf 234058999986322434568988777769787636799289999789-9--77999--204999789874266899999
Q ss_pred -CHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEECCC------------------------CEEEEE
Q ss_conf -6899999999999973169406503767778835999999999963587------------------------479999
Q gi|254780141|r 93 -KLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDR------------------------HCAIIT 147 (208)
Q Consensus 93 -~p~~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~~~------------------------~~a~i~ 147 (208)
.+..-+.+.|.+.|+. .+..+. .+.....++++-|...+....+ ....+.
T Consensus 77 ~~l~~y~~~~l~~~l~~--~~~vv~---~pgp~~lrlr~aIT~~~~~~~~l~~~~~iP~g~v~~~~~~a~G~~~~~g~v~ 151 (202)
T pfam11769 77 AELANYFDQALKEELSK--RFPLVD---APGPGTLRVRVAITGVDTSTPDLKAYEVIPIGLVIAGVKAATGTRDGSGSVA 151 (202)
T ss_pred HHHHHHHHHHHHHHHHC--CCCCCC---CCCCCEEEEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99999999999999861--570035---8999869999999850257876644896102787665553026667742799
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999994578827789999999952-779988999999999999999999
Q gi|254780141|r 148 MSLKIINAHDNSLVGQKVFHVEEKL-EKDNKLHFIQSLNRAFSRISSEII 196 (208)
Q Consensus 148 ~~~~l~~~~~~~~~~~~~f~~~~~~-~~~~~~~~v~Al~~Al~~l~~~ia 196 (208)
++.++.+..++++++.......-.- ..+....-......+++..++++.
T Consensus 152 ~e~e~~Da~tg~~la~~V~~~~g~~~~~~~~~~~~~~ak~~id~wa~~~~ 201 (202)
T pfam11769 152 VEVELLDAQTGELLAAVVDKRYGNKLENSASVITLDDAKAAIDKWAKDLV 201 (202)
T ss_pred EEEEEEECCCCCCHHHHHECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999876888675665210058755555673669999999999999850
No 12
>COG1462 CsgG Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]
Probab=94.29 E-value=0.35 Score=25.63 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=64.9
Q ss_pred EECCCCCCC--CHHHHHHHHHHHHHHHHCCCEEEECCCC-----------------CCCCCEEEEEEEEEEEEECC--C-
Q ss_conf 814660125--6899999999999973169406503767-----------------77883599999999996358--7-
Q gi|254780141|r 84 YLIGSQWSD--KLPRMIQLKLIANFENNGKISTVVKPNQ-----------------GIYADYQIISAIRSFEINID--R- 141 (208)
Q Consensus 84 ~~~~~rW~~--~p~~~l~~~L~~~L~~~~~~~~v~~~~~-----------------~~~~~~~L~~~I~~f~~~~~--~- 141 (208)
+-.+-.|-. .+++.+.+.|...|.+++.|..+..... -..+||.+.++|..||.... |
T Consensus 58 ~~~~~~s~g~~~lg~g~s~~LvTaL~~TG~F~VleRe~l~~l~~E~~i~g~~~~~~l~GAdy~V~G~IT~~e~~~ks~G~ 137 (252)
T COG1462 58 FMSGPFSDGSDALGQGASDMLVTALKKTGRFNVLERENLEELLNEAEISGAAQKQQLKGADYVVTGSITQYEFGAKSGGG 137 (252)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEECCCCCCCC
T ss_conf 16674004785312058999999997649837875344999988888606664342467758997430034025433677
Q ss_pred -------------CEEEEEEEEEEEECCCCCEEEEEEEEEEE
Q ss_conf -------------47999999999945788277899999999
Q gi|254780141|r 142 -------------HCAIITMSLKIINAHDNSLVGQKVFHVEE 170 (208)
Q Consensus 142 -------------~~a~i~~~~~l~~~~~~~~~~~~~f~~~~ 170 (208)
+.+.|.+..++++.+++.++.+..++.+.
T Consensus 138 g~~l~G~~~r~~~q~a~iavdLRvVnv~T~EVv~s~~~~g~~ 179 (252)
T COG1462 138 GAQLFGIGARGKKQIAYIAVDLRVVNVSTSEVVYSATGAGTI 179 (252)
T ss_pred CCCCEEEECCCCCCEEEEEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 754010211430101126778888861441699998513531
No 13
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.31 E-value=0.53 Score=24.59 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEECCCCC--------------CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCC
Q ss_conf 68999999999999731694065037677--------------7883599999999996358747999999999945788
Q gi|254780141|r 93 KLPRMIQLKLIANFENNGKISTVVKPNQG--------------IYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDN 158 (208)
Q Consensus 93 ~p~~~l~~~L~~~L~~~~~~~~v~~~~~~--------------~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~~~~ 158 (208)
.+++.+.+.+..+|.++|-|..+.+.... ...++.+.+.+.... ++ . +.++++|.+...+
T Consensus 52 ~~~~~i~~II~~DL~~SG~F~~l~~~~~~~~~~~~i~f~~W~~lgad~lv~G~v~~~~---~g-~--~~v~~~L~Dv~~~ 125 (430)
T PRK02889 52 GLPQQVTSIVRADLARSGKFSNVDAGGAPVPETASVDLGAWKAKGADAFVAGSVNREP---NG-Q--YEVRFRLYDTVKQ 125 (430)
T ss_pred CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECC---CC-C--EEEEEEEEECCCC
T ss_conf 7506799999988872888400584347899878868689886089899999999778---98-4--8999999974666
Q ss_pred CEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 277899999999527799889999999999999999999
Q gi|254780141|r 159 SLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIID 197 (208)
Q Consensus 159 ~~~~~~~f~~~~~~~~~~~~~~v~Al~~Al~~l~~~ia~ 197 (208)
+.+..+.|... ...+.+..-+++++|..
T Consensus 126 ~~l~g~~~~~~-----------~~~~R~~aH~iaD~Iy~ 153 (430)
T PRK02889 126 QSLGGLSLTVT-----------EDQLRATAHKIADYIYE 153 (430)
T ss_pred CEEEEEEEEEC-----------HHHHHHHHHHHHHHHHH
T ss_conf 18743389958-----------89989999999999999
No 14
>COG4380 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.89 E-value=0.62 Score=24.23 Aligned_cols=169 Identities=12% Similarity=0.213 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCC--CCCCCCCCEEEEEECCCEEEEECCCCCCCC
Q ss_conf 999999999863048899986079707888766666666208981530--120006863789946976998146601256
Q gi|254780141|r 16 CSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPI--TEKILNSEDIIVRSSPIEIQYLIGSQWSDK 93 (208)
Q Consensus 16 ~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~~~~~~~~i~v~~~~--~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~ 93 (208)
+.+.+...+.++||..+..|.+|-.+-. + ++.+|.|.+|. .|+.-.+-.++-+.. .-+...-| +.-
T Consensus 4 l~~~~~~vl~ls~c~~~~a~~dyt~fk~------s--kp~silv~ppln~spdv~at~g~Lsqvt-~PLaEAGY--YV~- 71 (216)
T COG4380 4 LILGLAAVLALSACQVQKAPFDYTSFKE------S--KPASILVVPPLNESPDVNATWGVLSQVT-APLAEAGY--YVF- 71 (216)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHH------C--CCCEEEEECCCCCCCCCCCHHHHHHHHC-CHHHHCCE--EEE-
T ss_conf 8999999999865357767665344430------5--9843898478788987441134455521-00332833--787-
Q ss_pred HHHHHHHHHHH-HHHHHCCCEEEECCCCC--CCCCEEEEEEEEEEEEEC---CCCEEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 89999999999-99731694065037677--788359999999999635---8747999999999945788277899999
Q gi|254780141|r 94 LPRMIQLKLIA-NFENNGKISTVVKPNQG--IYADYQIISAIRSFEINI---DRHCAIITMSLKIINAHDNSLVGQKVFH 167 (208)
Q Consensus 94 p~~~l~~~L~~-~L~~~~~~~~v~~~~~~--~~~~~~L~~~I~~f~~~~---~~~~a~i~~~~~l~~~~~~~~~~~~~f~ 167 (208)
|-..+...+.+ .|.+.+....|.+.... -..|-.|-+.|.+.--.| +. .-.+.....|++.++|+.+.+..-+
T Consensus 72 PvAvveETFkQNGlT~AgDih~v~paKL~qIfGaDA~LYiTvt~YGT~Y~ii~S-~T~V~A~AkLVDlr~G~~LWsGsas 150 (216)
T COG4380 72 PVAVVEETFKQNGLTNAGDIHAVRPAKLHQIFGADAVLYITVTEYGTSYQIIDS-VTTVSAKAKLVDLRNGKELWSGSAS 150 (216)
T ss_pred EEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCEEEEEEE-EEEEEECCEEEECCCCCEEECCCCC
T ss_conf 516657788874887533405579899998747664899998644616899741-0488513358872578466524543
Q ss_pred EEEEC-CCCCHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 99952-779988999999-9999999999999
Q gi|254780141|r 168 VEEKL-EKDNKLHFIQSL-NRAFSRISSEIID 197 (208)
Q Consensus 168 ~~~~~-~~~~~~~~v~Al-~~Al~~l~~~ia~ 197 (208)
.+..- ...+..+++-++ +.++.|+++.+.+
T Consensus 151 ASs~E~gN~s~gGliG~LvsAaV~QI~Ns~~D 182 (216)
T COG4380 151 ASSREGGNNSNGGLLGALVSAAVNQIANSLTD 182 (216)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 12002577876407999999999999756552
No 15
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=92.15 E-value=0.24 Score=26.54 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78999999999999998630488999
Q gi|254780141|r 9 IKKKIISCSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 9 ~r~~~~~~~l~~~~~~~l~~c~~~~~ 34 (208)
+-+.++.++++++++++|+||...++
T Consensus 2 ~~~t~~Rl~~~~~~~~ll~GCa~~~~ 27 (230)
T PRK12700 2 MLKTVLRLPVCAALLALAAGCAMIPP 27 (230)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 15889999999999999744468999
No 16
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=86.78 E-value=2.1 Score=21.22 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHH
Q ss_conf 99999999986304889998607970788876666666620898153012000686378994697699814660125689
Q gi|254780141|r 16 CSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLP 95 (208)
Q Consensus 16 ~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~~~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~ 95 (208)
++.++..++.|+||+.-..-...-.|+..+ .-..+|++.|+ ..+.||-. ++--.+. --
T Consensus 8 ~~~~~~~~l~lsGC~a~~tai~krnL~VqT------kMS~TIfLdP~-------s~ktVyv~----vrNTS~~-----~~ 65 (243)
T PRK13731 8 MVALVSSTLALSGCGAMSTAIKKRNLEVKT------QMSETIWLEPA-------SERTVFLQ----IKNTSDK-----DM 65 (243)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCCEEC------EECCCEEECCC-------CCCEEEEE----EECCCCC-----CH
T ss_conf 999999999971568767787735752222------00043886685-------45579999----8517877-----24
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf 99999999999731694065037677788359999999999
Q gi|254780141|r 96 RMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFE 136 (208)
Q Consensus 96 ~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~ 136 (208)
..|+..|...|...|... + +.+.++.|.|+..|...+
T Consensus 66 ~~l~~~i~~~L~akGY~i--v--~~P~~A~Y~LQaNVL~~~ 102 (243)
T PRK13731 66 SGLQGKIADAVKAKGYQV--V--TSPDKAYYWIQANVLKAD 102 (243)
T ss_pred HHHHHHHHHHHHHCCEEE--E--CCHHHCEEEEEEEEHHCC
T ss_conf 567899999998589098--6--786576077274240235
No 17
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=83.61 E-value=1.7 Score=21.73 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 247778999999999999998630488999
Q gi|254780141|r 5 LNKIIKKKIISCSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 5 ~~~~~r~~~~~~~l~~~~~~~l~~c~~~~~ 34 (208)
|.+.|++.++.+ .+++++++|+||+....
T Consensus 1 m~~~MKK~~l~~-~~~~~~l~LaaCss~~~ 29 (298)
T PRK04405 1 MKKKMKKWALAA-ASAGLLLSLAGCSSNNK 29 (298)
T ss_pred CHHHHHHHHHHH-HHHHHHHHHHHCCCCCC
T ss_conf 906789999999-99999999987179997
No 18
>PRK05137 tolB translocation protein TolB; Provisional
Probab=81.57 E-value=3.6 Score=19.90 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEECCCCC-----------------CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEC
Q ss_conf 68999999999999731694065037677-----------------7883599999999996358747999999999945
Q gi|254780141|r 93 KLPRMIQLKLIANFENNGKISTVVKPNQG-----------------IYADYQIISAIRSFEINIDRHCAIITMSLKIINA 155 (208)
Q Consensus 93 ~p~~~l~~~L~~~L~~~~~~~~v~~~~~~-----------------~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~ 155 (208)
.+++.+.+.+..+|.++|-|..+.+.... ...++.+.+.|.... + + .+.++++|.+.
T Consensus 54 ~l~~~i~~II~~DL~~SG~F~~l~~~~~l~~p~~~~~~~~f~dW~~lgad~LV~G~v~~~~---~-g--~~~v~f~L~DV 127 (437)
T PRK05137 54 ELGADIAQVIAADLKRSGLFAPIDKAAFIEKITNPDAAPRFADWKAINAQALVTGRVTKQG---D-G--RLKVEFRLWDV 127 (437)
T ss_pred HHHHHHHHHHHHHHHHCCCCEECCHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECC---C-C--EEEEEEEEEEC
T ss_conf 3568899999977863889556484553467776456737478865698889998889879---9-6--49999999974
Q ss_pred CCCCEEEEEEEE
Q ss_conf 788277899999
Q gi|254780141|r 156 HDNSLVGQKVFH 167 (208)
Q Consensus 156 ~~~~~~~~~~f~ 167 (208)
..++.+..+.|.
T Consensus 128 ~~~~~l~g~~~~ 139 (437)
T PRK05137 128 FAGQQLLGQQFF 139 (437)
T ss_pred CCHHEECCEEEE
T ss_conf 640102260899
No 19
>PRK00178 tolB translocation protein TolB; Provisional
Probab=80.94 E-value=3.8 Score=19.78 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEECCCCC----------------CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECC
Q ss_conf 68999999999999731694065037677----------------78835999999999963587479999999999457
Q gi|254780141|r 93 KLPRMIQLKLIANFENNGKISTVVKPNQG----------------IYADYQIISAIRSFEINIDRHCAIITMSLKIINAH 156 (208)
Q Consensus 93 ~p~~~l~~~L~~~L~~~~~~~~v~~~~~~----------------~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~~ 156 (208)
.+++.+.+.+..+|.++|.|..+-+.... ...++.+.+.|.. +++. +.++++|.+..
T Consensus 50 ~~~~~i~~iI~~DL~~sG~F~~l~~~~~~~~p~~~~~i~f~~W~~lgad~Lv~G~i~~-----~gg~--~~v~~~L~DV~ 122 (433)
T PRK00178 50 VLPEDMAQIIGNDLRNSGYFEPIPRQNMISLPSQASEVIFRDWKALGAQYVMVGNIVP-----AGGR--LQVQYALFNVA 122 (433)
T ss_pred CHHHHHHHHHHHHHHCCCCCEECCHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEE-----CCCE--EEEEEEEEECC
T ss_conf 2248999999988862888552483552468885457575687750987899987994-----5997--99999999714
Q ss_pred CCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88277899999999527799889999999999999999999
Q gi|254780141|r 157 DNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIID 197 (208)
Q Consensus 157 ~~~~~~~~~f~~~~~~~~~~~~~~v~Al~~Al~~l~~~ia~ 197 (208)
.++.+..+.|... ...+.+..-+++++|-.
T Consensus 123 ~~~~l~g~~~~~~-----------~~~~R~~aH~iaD~Iy~ 152 (433)
T PRK00178 123 TEQQVLTGSVSGS-----------TDQLRDMAHYIADQSFE 152 (433)
T ss_pred CCEEEECCEEEEC-----------HHHHHHHHHHHHHHHHH
T ss_conf 5207603269957-----------89989999999999999
No 20
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=80.83 E-value=2.2 Score=21.13 Aligned_cols=20 Identities=40% Similarity=0.487 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 778999999999999998630488
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFF 31 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~ 31 (208)
|||+.++. .+++ +.|+||+.
T Consensus 1 mm~~~l~~-~~~~---~~L~GC~~ 20 (238)
T PRK12696 1 MIRKLLAA-SCAV---LLLSGCNA 20 (238)
T ss_pred CHHHHHHH-HHHH---HHHHCCCC
T ss_conf 95899999-9999---99516568
No 21
>PRK13684 Ycf48-like protein; Provisional
Probab=80.67 E-value=1.5 Score=22.00 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9740247778999999999999998630488
Q gi|254780141|r 1 MDKKLNKIIKKKIISCSLAVLLCTSLSSCFF 31 (208)
Q Consensus 1 m~~~~~~~~r~~~~~~~l~~~~~~~l~~c~~ 31 (208)
|++.+....+ +.++++++++|++|+.
T Consensus 1 m~~~~~~~~~-----l~l~~~~~~~~~~c~~ 26 (333)
T PRK13684 1 MKRLLKSLLN-----LLLLLALGLVLSGCST 26 (333)
T ss_pred CHHHHHHHHH-----HHHHHHHHHHHCCCCC
T ss_conf 9268888999-----9999999986322356
No 22
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=79.94 E-value=2.7 Score=20.60 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 789999999999999986304889998
Q gi|254780141|r 9 IKKKIISCSLAVLLCTSLSSCFFHNNP 35 (208)
Q Consensus 9 ~r~~~~~~~l~~~~~~~l~~c~~~~~p 35 (208)
|++++++.+++++.++.|+||+.....
T Consensus 1 MKKKl~~~~~~~~svl~LaaCs~~~~~ 27 (310)
T PRK01326 1 MKKKLIAGAVTLLSVATLAACSKTNDN 27 (310)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 908899999999999999871699988
No 23
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=79.68 E-value=1.9 Score=21.42 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 77899999999999999863048899
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
|.++.++..++++..++.|++|++..
T Consensus 1 Mkkkk~~~~~~~~~~~l~LaaC~s~~ 26 (283)
T PRK02998 1 MKKKKLFIGTIISCVVLALSACGSSD 26 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 93589999999999999998668998
No 24
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=79.37 E-value=4.3 Score=19.48 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=16.1
Q ss_pred CCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCC
Q ss_conf 2089815301200068637899469769981466012
Q gi|254780141|r 55 IQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWS 91 (208)
Q Consensus 55 ~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~ 91 (208)
..+.|++|..|-. --++.+.+..-+.+|.
T Consensus 73 ~~~dIrpP~~pL~--------~Isg~r~erdGd~~~l 101 (342)
T COG3317 73 KALDIRPPAQPLA--------LISGSRAERDGDTRWL 101 (342)
T ss_pred CCCCCCCCCCCHH--------HCCCCHHEECCCEEEE
T ss_conf 6445689877632--------2465221115873699
No 25
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=78.80 E-value=3.7 Score=19.87 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 999999999998630488999860797078
Q gi|254780141|r 14 ISCSLAVLLCTSLSSCFFHNNPVNIYDLTE 43 (208)
Q Consensus 14 ~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~ 43 (208)
+.+..++++.++++||++...-.+.-.++.
T Consensus 8 ~~~~~~l~~~l~l~gCg~~~~~~~~ikVG~ 37 (271)
T PRK11063 8 FAAVGALIGSLALVGCGQDEKDPNHIKVGV 37 (271)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
T ss_conf 999999999997500589856798189984
No 26
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=78.60 E-value=3 Score=20.38 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=11.8
Q ss_pred HHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 9999998630488999860797
Q gi|254780141|r 19 AVLLCTSLSSCFFHNNPVNIYD 40 (208)
Q Consensus 19 ~~~~~~~l~~c~~~~~p~~~Y~ 40 (208)
++++++.++||+..+.|..-|.
T Consensus 10 il~~al~l~GCs~~~a~~~sv~ 31 (200)
T COG3417 10 ILLLALFLSGCSSEPAPKESVK 31 (200)
T ss_pred HHHHHHHHHHCCCCCCCCHHCC
T ss_conf 9999999841136778601027
No 27
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=78.50 E-value=2.1 Score=21.26 Aligned_cols=15 Identities=13% Similarity=0.157 Sum_probs=7.9
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 999999863048899
Q gi|254780141|r 19 AVLLCTSLSSCFFHN 33 (208)
Q Consensus 19 ~~~~~~~l~~c~~~~ 33 (208)
++++++.|+||....
T Consensus 6 l~~~~l~LsGC~~~~ 20 (220)
T PRK12407 6 LTPMVLALCGCESPA 20 (220)
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 999999973658888
No 28
>PRK02944 OxaA-like protein precursor; Validated
Probab=77.73 E-value=2.6 Score=20.67 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 789999999999999986304889
Q gi|254780141|r 9 IKKKIISCSLAVLLCTSLSSCFFH 32 (208)
Q Consensus 9 ~r~~~~~~~l~~~~~~~l~~c~~~ 32 (208)
+|+++....+.+.+++.|+||+..
T Consensus 1 mkk~~~~~~~~~~~~~~lsgC~~~ 24 (255)
T PRK02944 1 MKKKLGLLAMVVALMAILAGCSEV 24 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 928999999999999999624688
No 29
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=76.57 E-value=4.4 Score=19.42 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=8.4
Q ss_pred CCCCCCCCCCEEEEEECC
Q ss_conf 301200068637899469
Q gi|254780141|r 62 PITEKILNSEDIIVRSSP 79 (208)
Q Consensus 62 ~~~~~~l~~~~Iv~~~~~ 79 (208)
+..-+.....+++.+-++
T Consensus 77 v~~Gd~VkkGq~La~LD~ 94 (385)
T PRK09859 77 FIEGDKVNQGDSLYQIDP 94 (385)
T ss_pred CCCCCEEECCCEEEEECC
T ss_conf 389998848988998284
No 30
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=73.59 E-value=6.3 Score=18.56 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4024777899999999999999863048899
Q gi|254780141|r 3 KKLNKIIKKKIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 3 ~~~~~~~r~~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
|++++++|..++++++ +.|++|++.+
T Consensus 1 M~~nk~~K~l~ia~~~-----l~LaACSS~~ 26 (173)
T PRK10802 1 MQLNKVLKGLMIALPV-----MAIAACSSNK 26 (173)
T ss_pred CCHHHHHHHHHHHHHH-----HHHHHCCCCC
T ss_conf 9607899999999999-----9998557999
No 31
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=72.11 E-value=3.8 Score=19.80 Aligned_cols=27 Identities=4% Similarity=0.186 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 778999999999999998630488999
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~~~~ 34 (208)
+.|+.-+...+++.+++.++||+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~l~gC~~~~~ 38 (246)
T PRK12699 12 ARRRGRLLGPVLIVMLALVGGCSLPTP 38 (246)
T ss_pred CHHCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 020732488899999998604468999
No 32
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=72.11 E-value=3 Score=20.38 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 77899999999999999863048899
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
|-|..++..+..+.+++.|+||.+.+
T Consensus 1 ~~~~~f~~~~a~l~~~llLaGCa~~~ 26 (478)
T PRK11459 1 MNRDSFYAATASLPLFILLAGCAPMH 26 (478)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99740588899999999983788999
No 33
>PRK04922 tolB translocation protein TolB; Provisional
Probab=71.72 E-value=6.9 Score=18.30 Aligned_cols=68 Identities=6% Similarity=0.126 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCC---------------CC-CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCC
Q ss_conf 89999999999997316940650376---------------77-788359999999999635874799999999994578
Q gi|254780141|r 94 LPRMIQLKLIANFENNGKISTVVKPN---------------QG-IYADYQIISAIRSFEINIDRHCAIITMSLKIINAHD 157 (208)
Q Consensus 94 p~~~l~~~L~~~L~~~~~~~~v~~~~---------------~~-~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~~~ 157 (208)
+++.+.+.+..+|.++|.|..+-... |. ...++.+.+.+..- + ...+.++++|.+...
T Consensus 55 ~~~~i~~II~~DL~~SG~F~~l~~~~~~~~p~~~~~i~f~~Wr~lgad~LV~G~v~~~-----g-~g~~~v~frL~DV~~ 128 (439)
T PRK04922 55 PQTDVSAVVSADLDRSGQFRTLPAAQIVEKPTRGTEVQFQTWRALKQNYIVVGRVMDA-----G-EGAYRVEYELFDVAK 128 (439)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEC-----C-CCCEEEEEEEEECCC
T ss_conf 0364999998657727274415967854588864773868987629999999999988-----8-971899999998668
Q ss_pred CCEEEEEEEE
Q ss_conf 8277899999
Q gi|254780141|r 158 NSLVGQKVFH 167 (208)
Q Consensus 158 ~~~~~~~~f~ 167 (208)
++.+..+.|.
T Consensus 129 ~~~l~g~~~~ 138 (439)
T PRK04922 129 GERMLGLAMT 138 (439)
T ss_pred CCEEECCEEE
T ss_conf 7486210576
No 34
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PMID:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=71.49 E-value=4.9 Score=19.17 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCCCCCC--CEEEEC--CCCCCCC-CCCCCCCCEEEECCCCCCCCCCCEEEEE-ECCCEEEEECCCCCCC
Q ss_conf 99999986304889998--607970--7888766-6666662089815301200068637899-4697699814660125
Q gi|254780141|r 19 AVLLCTSLSSCFFHNNP--VNIYDL--TESTKYD-ESVQRHIQLIITEPITEKILNSEDIIVR-SSPIEIQYLIGSQWSD 92 (208)
Q Consensus 19 ~~~~~~~l~~c~~~~~p--~~~Y~L--~~~~~~~-~~~~~~~~i~v~~~~~~~~l~~~~Iv~~-~~~~~~~~~~~~rW~~ 92 (208)
++++++.++||++.++| +.+..| .+.+..- .....+..+.|+ +|+ .++..++...+..-.+
T Consensus 6 ~l~~~lllagC~s~~~~~~~~~v~l~l~a~~~lNpd~~G~p~PvvVr-------------vyqLkd~~~F~~adf~~L~~ 72 (146)
T TIGR03352 6 LLAACLLLAGCSSAPPPKEPTYVTLTLTAAPDVNPDEDGRASPVVVR-------------VYELKSDTKFEAADFFALTE 72 (146)
T ss_pred HHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEE-------------EEEECCHHHHHCCCHHHHHH
T ss_conf 89999998532599998887489999995688697989993575999-------------99967857756479899873
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 68999999999999731
Q gi|254780141|r 93 KLPRMIQLKLIANFENN 109 (208)
Q Consensus 93 ~p~~~l~~~L~~~L~~~ 109 (208)
.... .|..+|-..
T Consensus 73 ~~~~----~Lg~dll~~ 85 (146)
T TIGR03352 73 DAKK----ALGDDLIEQ 85 (146)
T ss_pred CHHH----HHHHHHHHC
T ss_conf 6477----878888637
No 35
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=70.73 E-value=4.9 Score=19.16 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999863048899
Q gi|254780141|r 12 KIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 12 ~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
++..++|++++++ |.+|+++.
T Consensus 3 si~s~~L~~~~~f-LvsC~gp~ 23 (142)
T TIGR03042 3 SLASLLLVLLLTF-LVSCSGPA 23 (142)
T ss_pred HHHHHHHHHHHHH-HHHCCCCC
T ss_conf 6999999999999-98838998
No 36
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=69.85 E-value=6.4 Score=18.49 Aligned_cols=21 Identities=29% Similarity=0.312 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 778999999999999998630488
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFF 31 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~ 31 (208)
|.|.++..++|++++ |+||..
T Consensus 1 m~r~~~~~~~la~~l---L~GC~~ 21 (230)
T PRK12701 1 MNRLNIAVSCLATAL---LFGCEA 21 (230)
T ss_pred CCHHHHHHHHHHHHH---HHCCCC
T ss_conf 925899999999999---755668
No 37
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=69.59 E-value=5.2 Score=19.02 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=9.3
Q ss_pred EEECCCCCCCCHHHHHHH
Q ss_conf 981466012568999999
Q gi|254780141|r 83 QYLIGSQWSDKLPRMIQL 100 (208)
Q Consensus 83 ~~~~~~rW~~~p~~~l~~ 100 (208)
..+++..|+.--.-++-.
T Consensus 60 ~~yP~s~~A~qA~L~~ay 77 (243)
T PRK10866 60 NRYPFGPYSQQVQLDLIY 77 (243)
T ss_pred HHCCCCHHHHHHHHHHHH
T ss_conf 868997678999999999
No 38
>PRK04792 tolB translocation protein TolB; Provisional
Probab=68.86 E-value=8 Score=17.94 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 56899999999999973169406503
Q gi|254780141|r 92 DKLPRMIQLKLIANFENNGKISTVVK 117 (208)
Q Consensus 92 ~~p~~~l~~~L~~~L~~~~~~~~v~~ 117 (208)
..+++.|.+.+..+|.++|-|..+..
T Consensus 49 ~~~~~~i~~II~~DL~rSG~F~~l~~ 74 (450)
T PRK04792 49 GKLPTDISAVIASDLQRSGKFSPVPT 74 (450)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEECCH
T ss_conf 43257999999988760878552596
No 39
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=68.71 E-value=7.5 Score=18.10 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999863048899
Q gi|254780141|r 12 KIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 12 ~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
+++.+.++++++++++||+...
T Consensus 2 k~~~~~~~~~~~~~l~~C~~~~ 23 (289)
T TIGR03659 2 KILSLILLALLSLGLTGCSSSK 23 (289)
T ss_pred CHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1299999999999984328998
No 40
>PRK01622 OxaA-like protein precursor; Validated
Probab=67.16 E-value=7.9 Score=17.97 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7789999999999999986304889
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFFH 32 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~~ 32 (208)
+.+++.+..++.+++++.|+||+..
T Consensus 2 ~k~~~~~l~~~~~~~~~~lsgc~~~ 26 (266)
T PRK01622 2 LKSYRAVLISLSLLLVFVLSGCSNA 26 (266)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 5388999999999999999546899
No 41
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=66.50 E-value=6.6 Score=18.43 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999863048899
Q gi|254780141|r 15 SCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 15 ~~~l~~~~~~~l~~c~~~~ 33 (208)
...+++++++.|+||...+
T Consensus 10 ~~~~~al~~l~LsGCa~~~ 28 (227)
T PRK12697 10 GAAACALAALALAGCAQIP 28 (227)
T ss_pred CHHHHHHHHHHHHCCCCCC
T ss_conf 3899999999972656789
No 42
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=65.97 E-value=6.6 Score=18.40 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 899999999999999863048899
Q gi|254780141|r 10 KKKIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 10 r~~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
+++++.++.+++.+++|+||+...
T Consensus 2 kkK~i~~~~~~~svl~LaaC~~~~ 25 (285)
T PRK03002 2 RGKHIFIITALISILMLSACGQKN 25 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 601899999999999999845799
No 43
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=64.82 E-value=5.8 Score=18.73 Aligned_cols=24 Identities=21% Similarity=0.276 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 789999999999999986304889
Q gi|254780141|r 9 IKKKIISCSLAVLLCTSLSSCFFH 32 (208)
Q Consensus 9 ~r~~~~~~~l~~~~~~~l~~c~~~ 32 (208)
|+++++.++.++...+.++||...
T Consensus 1 m~~r~~lia~~~a~~l~lsgC~t~ 24 (219)
T PRK10510 1 MKKRVYLIAAIVSGALAVSGCTTN 24 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 942689999999999874135678
No 44
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=64.53 E-value=6.5 Score=18.45 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999986304889998
Q gi|254780141|r 13 IISCSLAVLLCTSLSSCFFHNNP 35 (208)
Q Consensus 13 ~~~~~l~~~~~~~l~~c~~~~~p 35 (208)
++...+.+++++.|++|+.+.+|
T Consensus 3 ~~~~~~~~~~~~~~~~c~~~~~p 25 (177)
T PRK10477 3 LLPVVAAVTAAFLVVACSSPTPP 25 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 07899999999999764699999
No 45
>COG5510 Predicted small secreted protein [Function unknown]
Probab=64.30 E-value=5.6 Score=18.83 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77899999999999999863048
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCF 30 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~ 30 (208)
|+|+.++.+.+.++.++.+++|-
T Consensus 1 mmk~t~l~i~~vll~s~llaaCN 23 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAACN 23 (44)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90489999999999999998866
No 46
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=64.08 E-value=8.1 Score=17.93 Aligned_cols=19 Identities=37% Similarity=0.357 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999998630488999
Q gi|254780141|r 16 CSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 16 ~~l~~~~~~~l~~c~~~~~ 34 (208)
..+++++++.|+||...++
T Consensus 6 ~~~~~~~~~~LsgCa~~~~ 24 (231)
T PRK00249 6 IALALLLLLLLSGCASIPP 24 (231)
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999875348999
No 47
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=63.63 E-value=9.4 Score=17.57 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCEEEEEECCC
Q ss_conf 53012000686378994697
Q gi|254780141|r 61 EPITEKILNSEDIIVRSSPI 80 (208)
Q Consensus 61 ~~~~~~~l~~~~Iv~~~~~~ 80 (208)
.+..-+.....+++.+-++.
T Consensus 78 ~v~~Gd~V~kGq~La~lD~~ 97 (385)
T PRK09578 78 TYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EECCCCEECCCCEEEEECCH
T ss_conf 80799987389889998534
No 48
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=62.82 E-value=8.7 Score=17.74 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=23.8
Q ss_pred CCCCCCCCCEEEE--EECCCEEEEECCCCC-CCCHHHHHHHHHHH
Q ss_conf 0120006863789--946976998146601-25689999999999
Q gi|254780141|r 63 ITEKILNSEDIIV--RSSPIEIQYLIGSQW-SDKLPRMIQLKLIA 104 (208)
Q Consensus 63 ~~~~~l~~~~Iv~--~~~~~~~~~~~~~rW-~~~p~~~l~~~L~~ 104 (208)
.+..++.+..... +.++-+++-..+.+. ++.+.+|+++.+.=
T Consensus 83 ~Ls~pLg~t~l~L~~~~~ga~led~~g~~y~ae~ae~Ll~el~G~ 127 (206)
T COG3017 83 LLSNPLGSTLLELSQDRGGARLEDNKGQRYQAEDAEELLQELTGM 127 (206)
T ss_pred EEECCCCCCEEEEEECCCCEEEEECCCCEEECCCHHHHHHHHHCC
T ss_conf 981556761279996478238985899866521799999996688
No 49
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]
Probab=62.06 E-value=11 Score=17.18 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC----------CCCCCCCC-CCEEEECCCCCCCCCCCEEEEE
Q ss_conf 999999999999998630488999860797078887----------66666666-2089815301200068637899
Q gi|254780141|r 11 KKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTK----------YDESVQRH-IQLIITEPITEKILNSEDIIVR 76 (208)
Q Consensus 11 ~~~~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~----------~~~~~~~~-~~i~v~~~~~~~~l~~~~Iv~~ 76 (208)
++......+++++++|+||+.. -..+|...-..+ ...+..+. ....+..|.+.+.++.+.--|-
T Consensus 5 ~~~~~~~~a~l~~~als~Cst~--~~~~~~~~i~qGn~~~~~~v~ql~~Gmtk~QV~~lLGtP~~~d~F~~~~WyYv 79 (147)
T COG2913 5 ATAILAIAALLGAAALSGCSTL--KVVYYNDDINQGNVLDQDAVDQLKVGMTKDQVLYLLGTPSLVDTFDTNTWYYV 79 (147)
T ss_pred HHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCEEECCCCCCEEEEE
T ss_conf 8889999999999983148754--22234543245651598899871479889999998199701257788348999
No 50
>PRK12450 foldase protein PrsA; Reviewed
Probab=62.05 E-value=11 Score=17.17 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999986304889998
Q gi|254780141|r 13 IISCSLAVLLCTSLSSCFFHNNP 35 (208)
Q Consensus 13 ~~~~~l~~~~~~~l~~c~~~~~p 35 (208)
++..+.+++.+++|+||++....
T Consensus 7 ~~~~~~~~~svl~LaAC~s~~~~ 29 (309)
T PRK12450 7 LITGVVTLATVVTLSACQSSHNN 29 (309)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999860589998
No 51
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=59.48 E-value=10 Score=17.40 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=13.8
Q ss_pred EEEEEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 778999999995277998899999999
Q gi|254780141|r 160 LVGQKVFHVEEKLEKDNKLHFIQSLNR 186 (208)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~~v~Al~~ 186 (208)
.+...-|-.+.|+.+++... ..|.|+
T Consensus 126 ri~~~g~Ge~~Pv~~n~t~~-gra~NR 151 (160)
T PRK09967 126 NLTTQGLGKKYPIASNKTAQ-GRAENR 151 (160)
T ss_pred EEEEEECCCCCCCCCCCCHH-HHHHCC
T ss_conf 58999646567388996989-998769
No 52
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=59.31 E-value=12 Score=16.89 Aligned_cols=25 Identities=20% Similarity=0.487 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 777899999999999999863048899
Q gi|254780141|r 7 KIIKKKIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 7 ~~~r~~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
|-|++ ++.|++ +.+++.|+||...|
T Consensus 4 ~~~~r-~~~~~~-l~~~~lLagC~~~p 28 (488)
T PRK09915 4 RQLSR-LLLCSI-LGSTTLISGCALVR 28 (488)
T ss_pred HHHHH-HHHHHH-HHHHHHHCCCCCCC
T ss_conf 57769-999999-99999975266899
No 53
>PRK02463 OxaA-like protein precursor; Provisional
Probab=59.01 E-value=11 Score=17.23 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999863048899
Q gi|254780141|r 12 KIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 12 ~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
+++..++.+.+++.|+||...+
T Consensus 7 ~~~~~~~~~~~~l~LsgC~~~~ 28 (307)
T PRK02463 7 RILFSGLALSMLLTLTGCVGRD 28 (307)
T ss_pred HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999996346899
No 54
>TIGR02722 lp_ uncharacterized lipoprotein; InterPro: IPR014094 Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby..
Probab=56.96 E-value=8.7 Score=17.74 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHH--HCCCEEEECC------------------------------CCCCCCCEEEEEEEEEEEEE-CCC
Q ss_conf 99999999999973--1694065037------------------------------67778835999999999963-587
Q gi|254780141|r 95 PRMIQLKLIANFEN--NGKISTVVKP------------------------------NQGIYADYQIISAIRSFEIN-IDR 141 (208)
Q Consensus 95 ~~~l~~~L~~~L~~--~~~~~~v~~~------------------------------~~~~~~~~~L~~~I~~f~~~-~~~ 141 (208)
-+.+++.|...|.+ +|.|..+... ...+.++|-|-++|..-... .+|
T Consensus 105 t~~lt~~i~~~L~~rs~G~F~l~~~~g~~g~~~~~~~~l~~~~~~~~~~~~Ta~~~G~~~gA~y~LyG~~~~~~~~nv~g 184 (215)
T TIGR02722 105 TESLTDKIRTALLKRSSGKFVLTDAQGASGALDRVREQLGLQRESGLVNQSTAIKKGRLVGADYSLYGKISSIVKKNVDG 184 (215)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCC
T ss_conf 89999999999998438947995064432068899998732320677586787654210142036861012122320368
Q ss_pred C--EEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 4--79999999999457882778999
Q gi|254780141|r 142 H--CAIITMSLKIINAHDNSLVGQKV 165 (208)
Q Consensus 142 ~--~a~i~~~~~l~~~~~~~~~~~~~ 165 (208)
. .+.=.+..+|.+-++|-++.+..
T Consensus 185 ~~~~v~y~~~l~Lmd~~TGli~W~d~ 210 (215)
T TIGR02722 185 SKKLVYYKFTLRLMDLKTGLIVWSDE 210 (215)
T ss_pred CCEEEEHEEEEEECCCCCCCEEECCC
T ss_conf 73144121135431354652686587
No 55
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=56.22 E-value=12 Score=16.98 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 999999998630488999
Q gi|254780141|r 17 SLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 17 ~l~~~~~~~l~~c~~~~~ 34 (208)
+++.++++.|+||...|+
T Consensus 11 ~l~~~laflLsgC~tiPk 28 (191)
T COG3065 11 ALIGTLAFLLSGCVTIPK 28 (191)
T ss_pred HHHHHHHHHHHHCCCCCH
T ss_conf 999999999763035783
No 56
>COG5616 Predicted integral membrane protein [Function unknown]
Probab=55.77 E-value=14 Score=16.55 Aligned_cols=87 Identities=8% Similarity=0.163 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEECCCC---------------CCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCC
Q ss_conf 6899999999999973169406503767---------------7788359999999999635874799999999994578
Q gi|254780141|r 93 KLPRMIQLKLIANFENNGKISTVVKPNQ---------------GIYADYQIISAIRSFEINIDRHCAIITMSLKIINAHD 157 (208)
Q Consensus 93 ~p~~~l~~~L~~~L~~~~~~~~v~~~~~---------------~~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~~~ 157 (208)
-..++++.-++.+|++...+.++....+ .....|.|++++++ .++. |++..+|++.++
T Consensus 43 ~faDGlTEdiIt~Lsr~~~l~VIArnssft~kgka~dv~~v~~~Lgv~YvleGsvRr-----~g~R--vRvtaqLvda~~ 115 (152)
T COG5616 43 YFADGLTEDIITDLSRFRELFVIARNSSFTYKGKAVDVREVGEELGVRYVLEGSVRR-----AGGR--VRVTAQLVDASS 115 (152)
T ss_pred HHCCCCHHHHHHHHHHCCCCEEEECCCEEECCCCCCCHHHHHHHHCCCEEEEEEEEE-----CCCE--EEEEEEEEECCC
T ss_conf 650553088998766516856997565043168887878988873886899605763-----2887--999999973468
Q ss_pred CCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 827789999999952779988999999999999999
Q gi|254780141|r 158 NSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISS 193 (208)
Q Consensus 158 ~~~~~~~~f~~~~~~~~~~~~~~v~Al~~Al~~l~~ 193 (208)
|..+...+|.... ..+.+-......++..
T Consensus 116 G~~LWAeryDr~l-------~diFa~QDevt~~iv~ 144 (152)
T COG5616 116 GGHLWAERYDRDL-------DDIFALQDEVTERIVS 144 (152)
T ss_pred CCCCCHHHCCCCH-------HHHHHHHHHHHHHHHH
T ss_conf 8461577708457-------8899988999999998
No 57
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=55.40 E-value=14 Score=16.51 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=27.6
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 9740-247778999999999999998630488999860797078887666666662089815301200068
Q gi|254780141|r 1 MDKK-LNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNS 70 (208)
Q Consensus 1 m~~~-~~~~~r~~~~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~~~~~~~~i~v~~~~~~~~l~~ 70 (208)
|++| -+|+..-....+.+++...+.|-+.. ....||-.+ .............|.+.-..-.+.+++
T Consensus 1 Mn~r~r~Rl~~il~~~a~l~~a~~l~Lyal~---~ni~~fy~P-sel~~~~~~~G~rlR~GGlV~~GSv~R 67 (153)
T COG2332 1 MNRRRRKRLWIILAGLAGLALAVGLVLYALR---SNIDYFYTP-SELLEGKVETGQRLRLGGLVEAGSVQR 67 (153)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCEEEECH-HHHCCCCCCCCCEEEEEEEEEECEEEE
T ss_conf 9803431489999999999999999876420---375089877-996256456785888700686245873
No 58
>PRK10760 murein hydrolase B; Provisional
Probab=54.91 E-value=8.4 Score=17.84 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCCCCCCC
Q ss_conf 99999863048899986
Q gi|254780141|r 20 VLLCTSLSSCFFHNNPV 36 (208)
Q Consensus 20 ~~~~~~l~~c~~~~~p~ 36 (208)
+.+|.+|++|+++|.|.
T Consensus 8 ~~~~~~l~~css~p~~~ 24 (357)
T PRK10760 8 LPLFVLLAACSSKPKPT 24 (357)
T ss_pred HHHHHHHHHHCCCCCCC
T ss_conf 99999999851899999
No 59
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=53.99 E-value=13 Score=16.80 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999998630488999
Q gi|254780141|r 16 CSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 16 ~~l~~~~~~~l~~c~~~~~ 34 (208)
..+++..++.++||+.+.|
T Consensus 7 s~~ala~l~sLA~CG~KGP 25 (58)
T COG5567 7 SLLALATLFSLAGCGLKGP 25 (58)
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999985266787
No 60
>pfam08085 Entericidin Entericidin EcnA/B family. This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.
Probab=53.95 E-value=11 Score=17.18 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7899999999999999863048
Q gi|254780141|r 9 IKKKIISCSLAVLLCTSLSSCF 30 (208)
Q Consensus 9 ~r~~~~~~~l~~~~~~~l~~c~ 30 (208)
||+.+..+.++++.++.++||-
T Consensus 1 Mk~~~~~~~~l~~~~~~lagCN 22 (42)
T pfam08085 1 MKKLIALLLALLLLALVLAGCN 22 (42)
T ss_pred CHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9236999999999999986122
No 61
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118 This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=52.66 E-value=9.1 Score=17.64 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=7.3
Q ss_pred EEEECCCCCCCCHHHH
Q ss_conf 9981466012568999
Q gi|254780141|r 82 IQYLIGSQWSDKLPRM 97 (208)
Q Consensus 82 ~~~~~~~rW~~~p~~~ 97 (208)
..-.+.++-..+++..
T Consensus 95 ~k~~~~~~~~~~~p~~ 110 (174)
T TIGR02747 95 SKTLASKAALQPTPAF 110 (174)
T ss_pred ECCCCCCCCCCCCCCC
T ss_conf 1156640026888877
No 62
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=52.02 E-value=9.9 Score=17.42 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCEEEECCCC
Q ss_conf 24777899999999999999863048---------89998607970788
Q gi|254780141|r 5 LNKIIKKKIISCSLAVLLCTSLSSCF---------FHNNPVNIYDLTES 44 (208)
Q Consensus 5 ~~~~~r~~~~~~~l~~~~~~~l~~c~---------~~~~p~~~Y~L~~~ 44 (208)
|+||+|+....++++.+.++++++.. ++..|.=+|.+.+.
T Consensus 1 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~r~N~T~S~P~GlYri~~~ 49 (178)
T PRK13884 1 MSRILKRITAGVAIAGLAALLLAAGGYAAGARVNTTKSIPVGLYWTSSA 49 (178)
T ss_pred CCCHHHHHEEEEHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEECCC
T ss_conf 9514430112111578899999887630601876798733373891368
No 63
>TIGR00752 slp outer membrane lipoprotein, Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane.
Probab=48.31 E-value=9.3 Score=17.58 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999863048899
Q gi|254780141|r 15 SCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 15 ~~~l~~~~~~~l~~c~~~~ 33 (208)
...|+..+++.|+||...|
T Consensus 4 ~g~l~~~l~f~L~gC~~~P 22 (190)
T TIGR00752 4 KGLLITALAFLLTGCIAVP 22 (190)
T ss_pred HHHHHHHHHHHHHHHCCCC
T ss_conf 1456888998875314674
No 64
>PRK10540 lipoprotein; Provisional
Probab=48.15 E-value=15 Score=16.39 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 7789999999999999986304889998
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFFHNNP 35 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~~~~p 35 (208)
++.+++...++++.++..|++|+--...
T Consensus 3 ~~~kr~at~~la~tla~slsacsnmskr 30 (72)
T PRK10540 3 VTSKKMAAAVLAITLAMSLSACSNWSKR 30 (72)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 0068899999999999888774241202
No 65
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=47.12 E-value=20 Score=15.75 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=7.6
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 9999986304889998
Q gi|254780141|r 20 VLLCTSLSSCFFHNNP 35 (208)
Q Consensus 20 ~~~~~~l~~c~~~~~p 35 (208)
+++.+++|||++...|
T Consensus 14 l~~~~~~~g~~~~~~p 29 (364)
T PRK09534 14 LALVMTAAGGALAPAP 29 (364)
T ss_pred HHHHHHHCCCCCCCCC
T ss_conf 9999986267878899
No 66
>PRK13614 lipoprotein LpqB; Provisional
Probab=45.31 E-value=21 Score=15.58 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8999999999999998630488999
Q gi|254780141|r 10 KKKIISCSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 10 r~~~~~~~l~~~~~~~l~~c~~~~~ 34 (208)
|++...++|++++.+.|+||.+-|.
T Consensus 5 ~~~~~~~~ll~~~~v~LagCasiP~ 29 (573)
T PRK13614 5 KTRCASLALLVLLGVTLSACAQIPR 29 (573)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7422799999999988654046999
No 67
>pfam05590 DUF769 Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.
Probab=43.73 E-value=10 Score=17.32 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999863048899
Q gi|254780141|r 15 SCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 15 ~~~l~~~~~~~l~~c~~~~ 33 (208)
.|+|++.. +.|+||++.|
T Consensus 8 ~~SllaAs-lLLagCSsgP 25 (279)
T pfam05590 8 SCSLLAAS-LLLAGCSSGP 25 (279)
T ss_pred HHHHHHHH-HHHHCCCCCC
T ss_conf 16999999-9972378899
No 68
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.41 E-value=23 Score=15.41 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHCCCCCCC--CCEEE--ECCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCC
Q ss_conf 9999999998630488999--86079--70788876-6666666208981530120006863789946976998146601
Q gi|254780141|r 16 CSLAVLLCTSLSSCFFHNN--PVNIY--DLTESTKY-DESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQW 90 (208)
Q Consensus 16 ~~l~~~~~~~l~~c~~~~~--p~~~Y--~L~~~~~~-~~~~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW 90 (208)
..++++++++|+||++.++ |.+.- .|.+.+.. +.....+..|.|+ +++-.++..+....|..-
T Consensus 7 a~~~l~al~~~sgCsss~~~~pp~~l~l~l~a~~~~Np~~~g~a~Pl~Vr------------lyeLk~d~~F~~adY~~l 74 (159)
T COG3521 7 AVLALFALLVLSGCSSSKPLLPPSRLDLTLTAAPDLNPNANGEAAPLEVR------------LYELKDDSKFLSADYDQL 74 (159)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEE------------EEEECCCCCCCCCCHHHH
T ss_conf 89999999985241258877897188899970687698977883663999------------999768654454443665
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 25689999999999
Q gi|254780141|r 91 SDKLPRMIQLKLIA 104 (208)
Q Consensus 91 ~~~p~~~l~~~L~~ 104 (208)
.+++..-+..-|++
T Consensus 75 ~~~~~~tLg~dlv~ 88 (159)
T COG3521 75 ASDLKSTLGGDLVD 88 (159)
T ss_pred HCCCCHHCCCCCCC
T ss_conf 05620000522001
No 69
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=42.73 E-value=23 Score=15.35 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=61.1
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE----ECCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCE
Q ss_conf 1466012568999999999999731694065----037677788359999999999635874799999999994578827
Q gi|254780141|r 85 LIGSQWSDKLPRMIQLKLIANFENNGKISTV----VKPNQGIYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSL 160 (208)
Q Consensus 85 ~~~~rW~~~p~~~l~~~L~~~L~~~~~~~~v----~~~~~~~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~~~~~~ 160 (208)
...+-|.+.+.+++.+.|..+|.....+..+ .....+..+.-.|.+.+.+ . ++ .-. +..++.++.++.+
T Consensus 209 ~~~~~~s~~la~Gi~~klm~~L~~ys~y~v~~k~~y~~~~~~~~gK~l~v~~~~--q--~~-~~y--L~vey~nn~S~~~ 281 (512)
T PRK10153 209 NSCNNWSSSLADGIGQLLMADLNTVSTFMVHDKTNYNINEGISPGKTLSVRVVN--Q--RQ-QCF--LSVELRDNADGSV 281 (512)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEEEEEE--C--CC-CEE--EEEEEEECCCCCE
T ss_conf 774435578886799999999875245366510003578886778568999996--5--99-569--9999997688763
Q ss_pred EEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999995277998899999999999999999
Q gi|254780141|r 161 VGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEI 195 (208)
Q Consensus 161 ~~~~~f~~~~~~~~~~~~~~v~Al~~Al~~l~~~i 195 (208)
...|+| ++. ...+-..+++.++.+.+.+
T Consensus 282 ~l~R~Y----~it---~~~l~~vl~~~l~dLl~aL 309 (512)
T PRK10153 282 LFSKQY----FLT---NSNQLSVQNDLSQDLSRAL 309 (512)
T ss_pred EECCCC----CCC---HHHHHHHHHHHHHHHHHHH
T ss_conf 305545----478---4789999999999999985
No 70
>PRK11653 hypothetical protein; Provisional
Probab=42.03 E-value=17 Score=16.13 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 9999999999998630488999860797
Q gi|254780141|r 13 IISCSLAVLLCTSLSSCFFHNNPVNIYD 40 (208)
Q Consensus 13 ~~~~~l~~~~~~~l~~c~~~~~p~~~Y~ 40 (208)
+..++|.+..++.|+||...++....|.
T Consensus 21 l~P~alav~avF~LagCe~~~e~~siY~ 48 (223)
T PRK11653 21 LTPVALAVAAVFMLAGCEKSDETVSLYQ 48 (223)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHC
T ss_conf 1278889889998650478866402308
No 71
>PRK01742 tolB translocation protein TolB; Provisional
Probab=41.90 E-value=24 Score=15.28 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 89999999999997316940650
Q gi|254780141|r 94 LPRMIQLKLIANFENNGKISTVV 116 (208)
Q Consensus 94 p~~~l~~~L~~~L~~~~~~~~v~ 116 (208)
.++.|.+.+..+|.++|.|..+.
T Consensus 52 ~~~~i~~vI~~DL~~SG~F~~i~ 74 (430)
T PRK01742 52 APEDIAKIIAADLRNSGKFNPIA 74 (430)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 66789999987776084726259
No 72
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.67 E-value=24 Score=15.26 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=9.1
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 9999986304889998
Q gi|254780141|r 20 VLLCTSLSSCFFHNNP 35 (208)
Q Consensus 20 ~~~~~~l~~c~~~~~p 35 (208)
++....|+||+..|.+
T Consensus 13 ~~av~~LagC~~gpKs 28 (121)
T COG4259 13 LLAVAALAGCGGGPKS 28 (121)
T ss_pred HHHHHHHHHCCCCCCC
T ss_conf 9999999880579864
No 73
>pfam11684 DUF3280 Protein of unknown function (DUF2380). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=41.57 E-value=24 Score=15.25 Aligned_cols=79 Identities=11% Similarity=0.220 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCC----------------------CCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf 9999999999973169406503767----------------------778835999999999963587479999999999
Q gi|254780141|r 96 RMIQLKLIANFENNGKISTVVKPNQ----------------------GIYADYQIISAIRSFEINIDRHCAIITMSLKII 153 (208)
Q Consensus 96 ~~l~~~L~~~L~~~~~~~~v~~~~~----------------------~~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~ 153 (208)
.++.+.|.+.|..+|.+..|...+. ...++|.+-+.|.+. ..-.+.+...+.
T Consensus 31 ~~~~~~lr~~l~~sGry~~vd~ap~a~~~~~~~~l~~C~gC~~~~Ar~lGAd~~i~G~VqKv------Snlil~~~~~v~ 104 (140)
T pfam11684 31 AAVTDALREDLAESGRYRLVDLAPVAAEIAKIANLAKCGGCDARIARKLGADYALTGEVQKV------SNLILNLNVYVR 104 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEC------CCEEEEEEEEEE
T ss_conf 99999999999864984763660666666303895426666789999739988999999705------635799999999
Q ss_pred ECCCCCEEEEEEEEEEEECCCCCHHHHHHHH
Q ss_conf 4578827789999999952779988999999
Q gi|254780141|r 154 NAHDNSLVGQKVFHVEEKLEKDNKLHFIQSL 184 (208)
Q Consensus 154 ~~~~~~~~~~~~f~~~~~~~~~~~~~~v~Al 184 (208)
+..+++++..+....+ +++-++--.++
T Consensus 105 d~~tg~~v~~~~vdiR----gntD~sW~Rg~ 131 (140)
T pfam11684 105 DVESGRLVRGGSVDIR----GNTDESWERGM 131 (140)
T ss_pred ECCCCCEEECCEEEEE----CCCHHHHHHHH
T ss_conf 8678977860010652----58607899888
No 74
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=40.47 E-value=25 Score=15.15 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEE--ECC-CCCCCCHHHHHHHHHHHHH
Q ss_conf 530120006863789946976998--146-6012568999999999999
Q gi|254780141|r 61 EPITEKILNSEDIIVRSSPIEIQY--LIG-SQWSDKLPRMIQLKLIANF 106 (208)
Q Consensus 61 ~~~~~~~l~~~~Iv~~~~~~~~~~--~~~-~rW~~~p~~~l~~~L~~~L 106 (208)
.+.+..++....+....+++.... ..+ .+-+..|..++++.+.-.|
T Consensus 78 ~i~L~~pLG~~~~~i~~~~~~~~L~~~~g~~~~a~~~e~Ll~~~lG~~l 126 (203)
T PRK00022 78 RLLLTSPLGSTELELTGRPGGATLEDNNGQRYTADDAEELLQELTGWSL 126 (203)
T ss_pred EEEEEECCCCEEEEEEECCCEEEEEECCCCEEECCCHHHHHHHHHCCCC
T ss_conf 9999802665499999879979999799988867999999999878846
No 75
>pfam11254 DUF3053 Protein of unknown function (DUF3053). Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=40.35 E-value=18 Score=15.91 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999998630488999
Q gi|254780141|r 12 KIISCSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 12 ~~~~~~l~~~~~~~l~~c~~~~~ 34 (208)
+++.-.+++++.+.|+||+.+++
T Consensus 2 R~~~p~~al~~v~~LagCgdKE~ 24 (229)
T pfam11254 2 RWFAPLLALLVVLQLAGCGDKEP 24 (229)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 33888999999999850368988
No 76
>PRK06760 hypothetical protein; Provisional
Probab=39.36 E-value=10 Score=17.32 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC--CCCCEE
Q ss_conf 9999999999999986304889--998607
Q gi|254780141|r 11 KKIISCSLAVLLCTSLSSCFFH--NNPVNI 38 (208)
Q Consensus 11 ~~~~~~~l~~~~~~~l~~c~~~--~~p~~~ 38 (208)
+.+-.+.++++.+..++||+.. ..|.+=
T Consensus 3 K~l~i~i~~iis~~~lsaCS~~~~~~PANG 32 (223)
T PRK06760 3 KTLTIFMLTILLLISFSACSKKENSFPANG 32 (223)
T ss_pred EEEEEHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 067649999999998400336787898743
No 77
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=38.86 E-value=27 Score=15.00 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999863048899
Q gi|254780141|r 11 KKIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 11 ~~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
+.+..+.+++++.+.|+||++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~c~~~~ 25 (506)
T PRK06481 3 KIWTTLGMLLLLALILTGCGSNT 25 (506)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 18999999999999986507999
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=36.78 E-value=29 Score=14.81 Aligned_cols=90 Identities=12% Similarity=0.213 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCC----------------CCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCC
Q ss_conf 99999999999973169406503767----------------77883599999999996358747999999999945788
Q gi|254780141|r 95 PRMIQLKLIANFENNGKISTVVKPNQ----------------GIYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDN 158 (208)
Q Consensus 95 ~~~l~~~L~~~L~~~~~~~~v~~~~~----------------~~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~~~~ 158 (208)
++.+...+++.|++-..+..+..+.+ ...++|.|.+.|+.+ |+. +.+..+|++..++
T Consensus 137 ~d~l~~~II~aLSr~rwl~viar~sSft~~~r~~~Di~~v~reLgv~Y~L~G~V~~~-----g~~--vrIt~eLiDa~~~ 209 (553)
T PRK12370 137 SESLHYSIVKGLSQYAPFGLSVLPVTITKNCRSVKDILELMDQLRPDYYISGQMIPD-----GND--NIVQIEIVRVKGY 209 (553)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEEC-----CCE--EEEEEEEEECCCC
T ss_conf 122278999987550200157713212203766331999999848876975468962-----875--8999999716887
Q ss_pred CEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 27789999999952779988999999999999999999999973977
Q gi|254780141|r 159 SLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTLSSLPL 205 (208)
Q Consensus 159 ~~~~~~~f~~~~~~~~~~~~~~v~Al~~Al~~l~~~ia~w~~~~~p~ 205 (208)
.++.+.+|... ..+.. . .+.+.|+.-...+||.
T Consensus 210 ~llw~er~d~~----~~~~~---~-------~L~~~I~~aL~~~IP~ 242 (553)
T PRK12370 210 HLLHQESIKLI----EHQPA---S-------LLQNKIANLLLRCIPG 242 (553)
T ss_pred CEEEHHHHCCC----CCCHH---H-------HHHHHHHHHHHHHCCH
T ss_conf 44421111257----66679---9-------9999999999875440
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=36.36 E-value=22 Score=15.45 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=12.8
Q ss_pred HHHHHHHHHCCCCCCCCCE
Q ss_conf 9999998630488999860
Q gi|254780141|r 19 AVLLCTSLSSCFFHNNPVN 37 (208)
Q Consensus 19 ~~~~~~~l~~c~~~~~p~~ 37 (208)
++++++.++||+..+||.+
T Consensus 2 ~l~~~~~l~GC~~~~P~~q 20 (247)
T TIGR02521 2 ALVLLLALTGCVTTPPTVQ 20 (247)
T ss_pred HHHHHHHHHCCCCCCCCCC
T ss_conf 8878467851578878977
No 80
>PRK11023 hypothetical protein; Provisional
Probab=35.95 E-value=25 Score=15.18 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 99999999998630488
Q gi|254780141|r 15 SCSLAVLLCTSLSSCFF 31 (208)
Q Consensus 15 ~~~l~~~~~~~l~~c~~ 31 (208)
...++++.++.|+||.+
T Consensus 5 ~~l~~l~~~~~L~GC~~ 21 (191)
T PRK11023 5 SPLAVLISALLLQGCVA 21 (191)
T ss_pred HHHHHHHHHHHHCCCHH
T ss_conf 89999999999726823
No 81
>pfam03100 CcmE CcmE. CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.
Probab=35.57 E-value=30 Score=14.70 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 97402477789999999999999986304889998607970788876666666620898153012000
Q gi|254780141|r 1 MDKKLNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKIL 68 (208)
Q Consensus 1 m~~~~~~~~r~~~~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~~~~~~~~i~v~~~~~~~~l 68 (208)
|.+|-+|++--.+..+++.++..+.+.+. .....||. +|.+-..........+.|.-...++.+
T Consensus 1 m~~r~kRl~~i~~~~~~~~~~~~Lil~al---~~n~~yf~-tPsEl~~~~~~~~~~iRvgG~V~~gSi 64 (130)
T pfam03100 1 MPRRKRRLLLVLAALAALGLAVALVLYAL---RDNIVFFY-TPSEVAAGKAPPGRRIRLGGLVEEGSV 64 (130)
T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHHH---HHCEEEEE-CHHHHHCCCCCCCCEEEEEEEEECCCE
T ss_conf 98532454789999999999999999987---61812998-799982577666868999889960867
No 82
>PRK11548 hypothetical protein; Provisional
Probab=35.51 E-value=30 Score=14.69 Aligned_cols=55 Identities=9% Similarity=0.130 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCCCCC----------CCCCCCC-CEEEECCCCCCCCCCCEEEE
Q ss_conf 999999863048899986079707888766----------6666662-08981530120006863789
Q gi|254780141|r 19 AVLLCTSLSSCFFHNNPVNIYDLTESTKYD----------ESVQRHI-QLIITEPITEKILNSEDIIV 75 (208)
Q Consensus 19 ~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~----------~~~~~~~-~i~v~~~~~~~~l~~~~Iv~ 75 (208)
++++++.++||+...+ -.|..+...+-. .+-.+.. ...+..|.+.+.++.++=.|
T Consensus 10 ~ll~~lllsgCS~~~~--~vYk~dI~QGN~i~~~~v~~L~~GMTk~QV~~iLGtP~l~d~F~~~rWdY 75 (113)
T PRK11548 10 AAVLLMLTAGCSTLER--VVYRPDINQGNYLTPNDVAKIRVGMTQQQVAYALGTPMMSDPFGTNTWFY 75 (113)
T ss_pred HHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 9999999801157877--56576557567669999987618999999998718963238878874699
No 83
>PRK10838 spr putative outer membrane lipoprotein; Provisional
Probab=33.83 E-value=32 Score=14.53 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 0247778999999999999998630488999
Q gi|254780141|r 4 KLNKIIKKKIISCSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 4 ~~~~~~r~~~~~~~l~~~~~~~l~~c~~~~~ 34 (208)
|-.+++|-- +.+...+.++..|++|+..++
T Consensus 2 ~~~~~~r~~-l~~~~~~~~~~~l~ac~~~~~ 31 (188)
T PRK10838 2 KSQPILRYI-LRGIPAIAVAVLLSACSSNNT 31 (188)
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHCCCCC
T ss_conf 852689999-987179999998886338985
No 84
>PRK04168 hypothetical protein; Provisional
Probab=33.02 E-value=33 Score=14.46 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=11.3
Q ss_pred EEEEEEECCCCCHHHHHHHH
Q ss_conf 99999952779988999999
Q gi|254780141|r 165 VFHVEEKLEKDNKLHFIQSL 184 (208)
Q Consensus 165 ~f~~~~~~~~~~~~~~v~Al 184 (208)
.|-.+++-....++. +.+|
T Consensus 279 vY~iTV~~~A~n~e~-A~~F 297 (336)
T PRK04168 279 VYGITVPKNAPNREA-AIEF 297 (336)
T ss_pred EEEEECCCCCCCHHH-HHHH
T ss_conf 898764689999899-9999
No 85
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single HMM families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=33.00 E-value=33 Score=14.45 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 56899999999999973
Q gi|254780141|r 92 DKLPRMIQLKLIANFEN 108 (208)
Q Consensus 92 ~~p~~~l~~~L~~~L~~ 108 (208)
-|+++-++..|.+-|.+
T Consensus 111 rPlP~klk~Rl~~E~~~ 127 (135)
T TIGR03044 111 RPLPEKLKERLEKELKK 127 (135)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 86
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase; InterPro: IPR012703 Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. 2-Aminoethylphosphonate (AEP), the most common naturally occurring phosphonate, is an important precursor used in the biosynthesis of phosphonolipids, phosphonoproteins, and phosphonoglycans. This entry represents 2-aminoethylphosphonate-pyruvate transaminase (AEPT)(2.6.1.37 from EC) which catalyses the interconversion of AEP and phosphonoacetaldehyde (P-Ald), coupled with the interconversion of pryuvate and L-alanine. In some bacterial species this is the first step in an AEP degradation pathway which allows them to utilise this compound as a source of carbon, nitrogen and phosphorus. Phosphonoacetaldeyhde hydrolase, often encoded by an adjacent gene, then converts P-Ald to acetaldehyde and phosphate.Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lyase complex as found in Escherichia coli. The crystal structure of AEPT from Salmonella typhimurium has been studied to 2.2 A resolution . The protein is a homodimer where each subunit is composed of two domains, large and small. The large domain forms an alpha-beta complex characteristic of the aspartate transaminase family, while the small domain is comosed of highly twisted beta strands. The active site contains a pyridoxal 5'-phosphate cofactor and is found at the domain interface, being composed of residues from both subunits..
Probab=32.77 E-value=34 Score=14.43 Aligned_cols=20 Identities=15% Similarity=0.386 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 99889999999999999999
Q gi|254780141|r 175 DNKLHFIQSLNRAFSRISSE 194 (208)
Q Consensus 175 ~~~~~~v~Al~~Al~~l~~~ 194 (208)
++|.+.|.||.+||.++.+|
T Consensus 243 TsPTHvV~Af~qAL~el~~E 262 (366)
T TIGR02326 243 TSPTHVVHAFAQALLELEKE 262 (366)
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 77268999999999999845
No 87
>PRK10722 hypothetical protein; Provisional
Probab=31.93 E-value=35 Score=14.35 Aligned_cols=19 Identities=32% Similarity=0.530 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999986304889998
Q gi|254780141|r 17 SLAVLLCTSLSSCFFHNNP 35 (208)
Q Consensus 17 ~l~~~~~~~l~~c~~~~~p 35 (208)
.++.+.+++|+||.....+
T Consensus 19 ~~~~~~~l~L~gC~~~~~~ 37 (248)
T PRK10722 19 WIAGLPCLALAGCVQNANK 37 (248)
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9971499988630478887
No 88
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=30.71 E-value=26 Score=15.04 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=8.8
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 999998630488999
Q gi|254780141|r 20 VLLCTSLSSCFFHNN 34 (208)
Q Consensus 20 ~~~~~~l~~c~~~~~ 34 (208)
.+.++.|.||++.++
T Consensus 8 ~l~~~lLvGCsS~~~ 22 (123)
T COG5633 8 SLALLLLVGCSSHQE 22 (123)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999999420478877
No 89
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.29 E-value=37 Score=14.19 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999973
Q gi|254780141|r 179 HFIQSLNRAFSRISSEIIDWTLSS 202 (208)
Q Consensus 179 ~~v~Al~~Al~~l~~~ia~w~~~~ 202 (208)
+-+++-.+..+..+..-.+...+|
T Consensus 171 ~~~~~~a~k~~~mA~~y~aQlr~C 194 (197)
T COG4764 171 SWVKAGARKTQSMASRYEAQLRSC 194 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889998899999999999999750
No 90
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response .; GO: 0009847 spore germination, 0016020 membrane.
Probab=30.21 E-value=30 Score=14.67 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 999999999863048899
Q gi|254780141|r 16 CSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 16 ~~l~~~~~~~l~~c~~~~ 33 (208)
+.++++++++|+||-...
T Consensus 5 ~~~~~~~~~lL~GCwd~~ 22 (400)
T TIGR02887 5 ILLLILALLLLTGCWDKR 22 (400)
T ss_pred HHHHHHHHHHHCCCCCCH
T ss_conf 789999999832665620
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=29.96 E-value=38 Score=14.16 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 999999999863048899
Q gi|254780141|r 16 CSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 16 ~~l~~~~~~~l~~c~~~~ 33 (208)
..+++++++.++||++.+
T Consensus 4 ~~~~~~~~~~l~sCs~~~ 21 (235)
T TIGR03302 4 LILLLALLLLLAGCSSKK 21 (235)
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 999999999998738997
No 92
>pfam11810 DUF3332 Domain of unknown function (DUF3332). This family of proteins are functionally uncharacterized. This family is only found in bacteria.
Probab=29.52 E-value=35 Score=14.30 Aligned_cols=22 Identities=41% Similarity=0.443 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999986304889
Q gi|254780141|r 11 KKIISCSLAVLLCTSLSSCFFH 32 (208)
Q Consensus 11 ~~~~~~~l~~~~~~~l~~c~~~ 32 (208)
+++..++.+++..+.++||.+.
T Consensus 2 k~~~~v~a~~~~~~~~s~C~G~ 23 (175)
T pfam11810 2 KKILAVVAALAGSTSLSGCIGS 23 (175)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 1169999999999885220043
No 93
>pfam10738 Lpp-LpqN Probable lipoprotein LpqN. This family is conserved in Mycobacteriaceae and is likely to be a lipoprotein.
Probab=29.25 E-value=39 Score=14.08 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999998630488999
Q gi|254780141|r 14 ISCSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 14 ~~~~l~~~~~~~l~~c~~~~~ 34 (208)
......+.+..++++|.+..+
T Consensus 9 aa~~~~~~~~~~~a~c~~~~p 29 (227)
T pfam10738 9 AAAVAVLAVAGGTASCGPETP 29 (227)
T ss_pred HHHHHHHHHHHHHEEECCCCC
T ss_conf 799999997610001158999
No 94
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.51 E-value=40 Score=14.01 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 97402477789999999999999986304889998607970788876666666620898153012000
Q gi|254780141|r 1 MDKKLNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKIL 68 (208)
Q Consensus 1 m~~~~~~~~r~~~~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~~~~~~~~i~v~~~~~~~~l 68 (208)
|.+|-+|++--.+..+.+.++..+.+.+. .....||- +|.+-.....+....+.|.-...++.+
T Consensus 2 m~~rkkRl~~v~~~~~~l~~a~~Lil~al---~~ni~yFy-TPsEi~~~~~~~~~~iRvGGlV~~gSi 65 (149)
T PRK13254 2 MKRKRRRLLIILGALAALGLAVALVLYAL---RQNIVFFY-TPSEVAEGEAPAGKRFRLGGLVEKGSV 65 (149)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCEEEEE-CHHHHHCCCCCCCCEEEEEEEEEECCE
T ss_conf 95112247899999999999999999998---62806997-889994376667967999899972847
No 95
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family; InterPro: IPR014247 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain. .
Probab=28.32 E-value=40 Score=14.03 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999998630488999
Q gi|254780141|r 16 CSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 16 ~~l~~~~~~~l~~c~~~~~ 34 (208)
+.|+++++++.+||+....
T Consensus 4 ~~ll~~~~l~~tgC~~~~~ 22 (185)
T TIGR02898 4 IILLLLLLLLATGCTNAQK 22 (185)
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 8999999998731341001
No 96
>PRK11260 cystine transporter subunit; Provisional
Probab=27.91 E-value=41 Score=13.95 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 988999999999999999
Q gi|254780141|r 176 NKLHFIQSLNRAFSRISS 193 (208)
Q Consensus 176 ~~~~~v~Al~~Al~~l~~ 193 (208)
+-..+..++|+++.++-+
T Consensus 229 ~~~~L~~~in~~L~~l~~ 246 (264)
T PRK11260 229 GNPDLLKAVNNAIAEMQK 246 (264)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999996
No 97
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=27.72 E-value=41 Score=13.93 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7899999999999999863048899
Q gi|254780141|r 9 IKKKIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 9 ~r~~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
|++++++++ ++.+++|+||+...
T Consensus 1 MKK~~la~~--~~svl~LaaC~~~~ 23 (287)
T PRK03095 1 MKKAMLALA--ATSVIALSACGTSS 23 (287)
T ss_pred CCHHHHHHH--HHHHHHHHHCCCCC
T ss_conf 907899999--99999998516899
No 98
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.56 E-value=41 Score=13.91 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCC-C
Q ss_conf 999999999999863048899986079707888766666666208981530120006863789946976998146601-2
Q gi|254780141|r 13 IISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQW-S 91 (208)
Q Consensus 13 ~~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~~~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW-~ 91 (208)
+..+.+++.+.+.++||+.+.+ ...|...-. + . ++.+.-+|.++-+.-|.+.+.+.|..-..= -
T Consensus 7 l~~~~~alil~~sl~gCgdkEe-sktf~~nln-----G----~-----ei~~TytYKgDkVlkQsse~ki~Y~slga~tK 71 (152)
T COG4808 7 LFSLVVALVLVFSLAGCGDKEE-SKTFSGNLN-----G----T-----EIKITYTYKGDKVLKQSSENKILYASLGAKTK 71 (152)
T ss_pred HHHHHHHHHHHHHHHHCCCHHH-HHEEECCCC-----C----E-----EEEEEEEECCCCHHHHHCHHEEEHHHHCCCCH
T ss_conf 8899999999887540486666-522510357-----7----2-----88999996276043331111023154068648
Q ss_pred CCHHHHHH
Q ss_conf 56899999
Q gi|254780141|r 92 DKLPRMIQ 99 (208)
Q Consensus 92 ~~p~~~l~ 99 (208)
+....|+.
T Consensus 72 eeA~Kml~ 79 (152)
T COG4808 72 EEAAKMLE 79 (152)
T ss_pred HHHHHHHH
T ss_conf 99999988
No 99
>PRK04043 tolB translocation protein TolB; Provisional
Probab=27.45 E-value=42 Score=13.90 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEECCCCC-----------CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCE
Q ss_conf 568999999999999731694065037677-----------788359999999999635874799999999994578827
Q gi|254780141|r 92 DKLPRMIQLKLIANFENNGKISTVVKPNQG-----------IYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSL 160 (208)
Q Consensus 92 ~~p~~~l~~~L~~~L~~~~~~~~v~~~~~~-----------~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~~~~~~ 160 (208)
+.+++.|.+.+..+|.++|.|..+...... ...++.+.+.+..- +++. +.++++|.+...++.
T Consensus 44 ~~l~~~i~~II~~DL~rSG~F~~i~~~~~~~~~~~~~~w~~~~~d~lv~g~v~~~----~~g~--~~v~~~L~Dv~~~~~ 117 (419)
T PRK04043 44 ANLKLKFFKILVNDLKVSSHFDVSENKTQSNYAINYNELKDKKVNLVARYSLAVE----NGNK--LSLRIKLYDANTGSL 117 (419)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEC----CCCE--EEEEEEEEECCCCCE
T ss_conf 4136899999987534165851278766666776856877509979999999987----8986--999999998647719
Q ss_pred EEEEEEE
Q ss_conf 7899999
Q gi|254780141|r 161 VGQKVFH 167 (208)
Q Consensus 161 ~~~~~f~ 167 (208)
+..+.|.
T Consensus 118 l~~~~~~ 124 (419)
T PRK04043 118 KFEKDYT 124 (419)
T ss_pred EEEEEEE
T ss_conf 6540797
No 100
>COG4166 OppA ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]
Probab=27.42 E-value=42 Score=13.90 Aligned_cols=11 Identities=9% Similarity=0.144 Sum_probs=6.9
Q ss_pred CCCEEEEEEEE
Q ss_conf 88359999999
Q gi|254780141|r 123 YADYQIISAIR 133 (208)
Q Consensus 123 ~~~~~L~~~I~ 133 (208)
..|++|++++.
T Consensus 167 ~dd~Tl~itL~ 177 (562)
T COG4166 167 LDDRTLEITLE 177 (562)
T ss_pred CCCCEEEEEEC
T ss_conf 35877999976
No 101
>TIGR00865 bcl-2 Apoptosis regulator; InterPro: IPR004725 Bcl-X is a dominant regulator of programmed cell death in mammalian cells. The long form (Bcl-X(L)) displays cell death repressor activity, but the short isoform (Bcl-X(S)) and the b-isoform (Bcl-Xb) promote cell death. Bcl-X(L), Bcl-X(S) and Bcl-Xb are three isoforms derived by alternative RNA splicing. Bcl-X(S) forms heterodimers with Bcl-2. Homologues of Bcl-X include the rat Bax and mouse Bak proteins which also influence apoptosis.; GO: 0042981 regulation of apoptosis, 0016020 membrane.
Probab=26.75 E-value=43 Score=13.83 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=26.6
Q ss_pred CCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8277899999999527799889999999999999999999999739
Q gi|254780141|r 158 NSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTLSSL 203 (208)
Q Consensus 158 ~~~~~~~~f~~~~~~~~~~~~~~v~Al~~Al~~l~~~ia~w~~~~~ 203 (208)
|+|++--.| +-.=.|++.++.+..+...|+.|+...|
T Consensus 148 GRiVAfF~F---------gg~Lcv~s~~~~~~~L~~~I~~Wm~~YL 184 (243)
T TIGR00865 148 GRIVAFFSF---------GGALCVESVNKEMSELVSRIASWMTEYL 184 (243)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 889999997---------9999999974113134899999999999
No 102
>PRK11289 ampC beta-lactamase; Provisional
Probab=25.21 E-value=46 Score=13.66 Aligned_cols=28 Identities=7% Similarity=0.113 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7778999999999999998630488999
Q gi|254780141|r 7 KIIKKKIISCSLAVLLCTSLSSCFFHNN 34 (208)
Q Consensus 7 ~~~r~~~~~~~l~~~~~~~l~~c~~~~~ 34 (208)
+||+|.+..+.|+.+.++++++|...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 29 (387)
T PRK11289 2 SLMMKSLLAALLLTASISAFAAPAAAAT 29 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 1799999999999999986167655699
No 103
>pfam05481 Myco_19_kDa Mycobacterium 19 kDa lipoprotein antigen. Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18-kDa M. leprae antigen and the 19-kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes.
Probab=24.59 E-value=13 Score=16.75 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7789999999999999986304889
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFFH 32 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~~ 32 (208)
|.|..++...-.++++.+++||++.
T Consensus 1 m~r~~~vav~G~AilaaglsGCSs~ 25 (160)
T pfam05481 1 MRRKLLAAVAGVTILAAGASGCSSG 25 (160)
T ss_pred CCCEEEEEEHHHHHHHHHHCCCCCC
T ss_conf 9620477651478887775025589
No 104
>pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence.
Probab=24.16 E-value=48 Score=13.55 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 9999999986304889
Q gi|254780141|r 17 SLAVLLCTSLSSCFFH 32 (208)
Q Consensus 17 ~l~~~~~~~l~~c~~~ 32 (208)
.+++..+++|+||+..
T Consensus 7 ~~~i~SAL~LaGCg~~ 22 (269)
T pfam12262 7 ALLLASALLLAGCGDD 22 (269)
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999998641115799
No 105
>PRK11616 hypothetical protein; Provisional
Probab=24.00 E-value=40 Score=13.98 Aligned_cols=88 Identities=8% Similarity=-0.034 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC---CC-EEEECCCCCC-CCCCCCCC---CCEEEECCCCCCCCCCCEEEEEECCCE
Q ss_conf 8999999999999998630488999---86-0797078887-66666666---208981530120006863789946976
Q gi|254780141|r 10 KKKIISCSLAVLLCTSLSSCFFHNN---PV-NIYDLTESTK-YDESVQRH---IQLIITEPITEKILNSEDIIVRSSPIE 81 (208)
Q Consensus 10 r~~~~~~~l~~~~~~~l~~c~~~~~---p~-~~Y~L~~~~~-~~~~~~~~---~~i~v~~~~~~~~l~~~~Iv~~~~~~~ 81 (208)
|+.++.+.++ ..++.++||++.-. |. -||-=+-... ........ +.+.+.+.-....+|+--+-|
T Consensus 2 ~n~l~~f~~~-~g~l~~sGCSSvMtHtG~~qGyY~GTras~~ml~dd~T~W~mkpL~~iDlPFsAv~DTlLlPy------ 74 (109)
T PRK11616 2 RNVLLAFMIC-SGMLLLSGCSSVMSHTGGKEGTYPGTRASATMLGDDETNWGTKSLAALDMPFTAVMDTLLLPW------ 74 (109)
T ss_pred CCHHHHHHHH-HHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEHHCCCCHHHHHHHHHCCH------
T ss_conf 5303379998-589987575123011479888566623144675178877563120103372589887531107------
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998146601256899999999999973
Q gi|254780141|r 82 IQYLIGSQWSDKLPRMIQLKLIANFEN 108 (208)
Q Consensus 82 ~~~~~~~rW~~~p~~~l~~~L~~~L~~ 108 (208)
.|.|=.+.|.+-+++.=.++...
T Consensus 75 ----Dy~rsd~Spr~Rv~~~E~q~~~t 97 (109)
T PRK11616 75 ----DYFRKDSSVRSRVEKSEAQNQAT 97 (109)
T ss_pred ----HHHHCCCCHHHHHHHHHHHHHHH
T ss_conf ----66515898899999999864643
No 106
>pfam08816 Ivy Inhibitor of vertebrate lysozyme (Ivy). This bacterial family is a strong inhibitor of vertebrate lysozyme.
Probab=23.93 E-value=48 Score=13.57 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.1
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9981466012568999999999999731
Q gi|254780141|r 82 IQYLIGSQWSDKLPRMIQLKLIANFENN 109 (208)
Q Consensus 82 ~~~~~~~rW~~~p~~~l~~~L~~~L~~~ 109 (208)
-..++.-||...|++.++..|.+.|.+.
T Consensus 89 ps~~a~y~WLG~pd~~m~a~L~~qL~~d 116 (118)
T pfam08816 89 PSKHATYRWLGKPDEGMQAALTGQLEND 116 (118)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 3202123663899789999999999768
No 107
>PRK09837 copper/silver efflux system outer membrane protein CusC; Provisional
Probab=23.73 E-value=49 Score=13.50 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999999
Q gi|254780141|r 94 LPRMIQLKLIANF 106 (208)
Q Consensus 94 p~~~l~~~L~~~L 106 (208)
+..+|..+|..+.
T Consensus 63 L~~LI~~Al~~N~ 75 (460)
T PRK09837 63 VKTLISEALVNNR 75 (460)
T ss_pred HHHHHHHHHHCCH
T ss_conf 9999999996598
No 108
>PRK10002 outer membrane protein F; Provisional
Probab=23.40 E-value=49 Score=13.50 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 77899999999999999
Q gi|254780141|r 8 IIKKKIISCSLAVLLCT 24 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~ 24 (208)
|||++++++++.++++.
T Consensus 1 mMKK~~LA~ai~all~a 17 (362)
T PRK10002 1 MMKRNILAVIVPALLVA 17 (362)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 93087999999999860
No 109
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family; InterPro: IPR003282 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia. The type III secretion system is of great interest as it is used to transport virulence factors from the pathogen directly into the host cell and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis . However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself, type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. One of the outer membrane protein subunit families, termed "K" here for nomenclature purposes, aids in the structural assembly of the invasion complex . It is also described as a lipoprotein. Members of this family include the Salmonella PrgK and SsaJ genes, MxiJ from Shigella, YscJ from Yersinia, and from the plant enteropathogens NolT (Rhizobium) and HrcJ Erwinia). The flagellar M-ring protein FliF also shares a low level of similarity, presumably due to evolution of the type III secretion system from the flagellar biosynthetic pathway.; GO: 0009306 protein secretion.
Probab=22.92 E-value=49 Score=13.50 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEE-CC---------------CCCCC-----CCCCCCC--CCEEEEC---CCCCCCC
Q ss_conf 99999999998630488999860797-07---------------88876-----6666666--2089815---3012000
Q gi|254780141|r 15 SCSLAVLLCTSLSSCFFHNNPVNIYD-LT---------------ESTKY-----DESVQRH--IQLIITE---PITEKIL 68 (208)
Q Consensus 15 ~~~l~~~~~~~l~~c~~~~~p~~~Y~-L~---------------~~~~~-----~~~~~~~--~~i~v~~---~~~~~~l 68 (208)
..++++++++.|+||.... -.|. |+ -.... ....... .+|.|.. ..+-+.|
T Consensus 3 ~~~~~~~l~llL~GC~~~~---~Ly~gL~e~eANe~lA~L~~~gI~A~K~~~~~~~~~k~Gv~~~~~Ve~~~~~~A~~lL 79 (203)
T TIGR02544 3 RKLLLLLLLLLLTGCKVDL---ELYSGLSEREANEMLALLMRHGIDAEKVQAVSEKSGKGGVLYTISVEESDFARAVELL 79 (203)
T ss_pred HHHHHHHHHHHHHCCCCEE---EEECCCCHHHHHHHHHHHHHCCCCEEECHHHEECCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 5889999999971787405---6504789878999999999669834531221003788525889861878999999999
Q ss_pred CCCEEEEEECCCEEEEECCCCCCCCHHHH-------HHHHHHHHHHHH
Q ss_conf 68637899469769981466012568999-------999999999731
Q gi|254780141|r 69 NSEDIIVRSSPIEIQYLIGSQWSDKLPRM-------IQLKLIANFENN 109 (208)
Q Consensus 69 ~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~-------l~~~L~~~L~~~ 109 (208)
+..++.-+...+--+-++++-=..+|.+. +.+.|.+.|+.-
T Consensus 80 ~~~GLP~~~~~~~~~~Fp~~gLvsSP~eEraR~~ya~eQ~Le~tLs~I 127 (203)
T TIGR02544 80 RQNGLPRQSFVNLGELFPKDGLVSSPTEERARLLYAIEQELEQTLSQI 127 (203)
T ss_pred HHCCCCCCCCCCHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 863888953236887513577034869999999999999999986017
No 110
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=22.49 E-value=40 Score=14.02 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 899999999999999863048899
Q gi|254780141|r 10 KKKIISCSLAVLLCTSLSSCFFHN 33 (208)
Q Consensus 10 r~~~~~~~l~~~~~~~l~~c~~~~ 33 (208)
|.+++.. ..++..+.|+||+...
T Consensus 2 rtk~vlG-aviLaS~LLaGCsn~~ 24 (85)
T PRK09973 2 KTIFTVG-AVVLATCLLSGCVNEQ 24 (85)
T ss_pred CCEEHHH-HHHHHHHHHHCCCCHH
T ss_conf 6021106-9999999998155558
No 111
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=22.30 E-value=53 Score=13.33 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999973
Q gi|254780141|r 179 HFIQSLNRAFSRISSEIIDWTLSS 202 (208)
Q Consensus 179 ~~v~Al~~Al~~l~~~ia~w~~~~ 202 (208)
.-++.+-+++. ++++.+|+.+.
T Consensus 242 ~~ik~lv~a~~--S~evk~~i~~~ 263 (272)
T PRK09861 242 ENVKEFLQSYQ--SPEVAKAAETI 263 (272)
T ss_pred HHHHHHHHHHC--CHHHHHHHHHH
T ss_conf 89999999977--99999999987
No 112
>PRK13616 lipoprotein LpqB; Provisional
Probab=21.85 E-value=54 Score=13.28 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=7.4
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999999863048899
Q gi|254780141|r 18 LAVLLCTSLSSCFFHN 33 (208)
Q Consensus 18 l~~~~~~~l~~c~~~~ 33 (208)
+++.+++.++||..-|
T Consensus 11 ~~~~~~~llaGCaslP 26 (590)
T PRK13616 11 ALLAVALLVAGCASLP 26 (590)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999861203689
No 113
>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=21.77 E-value=54 Score=13.27 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.2
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1466012568999999999999731
Q gi|254780141|r 85 LIGSQWSDKLPRMIQLKLIANFENN 109 (208)
Q Consensus 85 ~~~~rW~~~p~~~l~~~L~~~L~~~ 109 (208)
.++-+|.+|+.++|++.+.+.-+.+
T Consensus 331 iY~GlwfdPl~e~LR~a~i~~~Q~~ 355 (420)
T TIGR00032 331 IYNGLWFDPLKEALRDAFIRKTQER 355 (420)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8620147807899999998887740
No 114
>PTZ00334 trans-sialidase; Provisional
Probab=21.74 E-value=54 Score=13.27 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 778999999999999998630488
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFF 31 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~ 31 (208)
|-|+....++|++++...|||+..
T Consensus 39 MSRrvF~SAVLLLlvVmMCCgsg~ 62 (780)
T PTZ00334 39 MSRRVFTSAVLLLLVVMMCCGSGG 62 (780)
T ss_pred CCHHHHHHHHHHHHHHHEECCCCH
T ss_conf 513446778999999842089826
No 115
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=21.26 E-value=55 Score=13.21 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=5.7
Q ss_pred HHHHHCCCCC
Q ss_conf 9986304889
Q gi|254780141|r 23 CTSLSSCFFH 32 (208)
Q Consensus 23 ~~~l~~c~~~ 32 (208)
++.|+||...
T Consensus 10 ~l~L~gCa~~ 19 (224)
T PRK12698 10 ALLLAGCSST 19 (224)
T ss_pred HHHHHCCCCC
T ss_conf 9998365688
No 116
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=20.55 E-value=57 Score=13.12 Aligned_cols=18 Identities=6% Similarity=0.292 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 988999999999999999
Q gi|254780141|r 176 NKLHFIQSLNRAFSRISS 193 (208)
Q Consensus 176 ~~~~~v~Al~~Al~~l~~ 193 (208)
+-..+.++.|+++.++-+
T Consensus 241 gd~~L~~~Vn~aL~~l~~ 258 (302)
T PRK10797 241 DDPQFKKLMDDTIAQAQT 258 (302)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999997
No 117
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=20.37 E-value=58 Score=13.10 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77899999999999999863048
Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCF 30 (208)
Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~ 30 (208)
+.|+.++.++++++.++++.+|+
T Consensus 2 ~~~~~l~~~~~~~l~~~~~~~~~ 24 (259)
T PRK11917 2 VFRKSLLKLAVFALGACVAFSNA 24 (259)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 42799999999999999863452
No 118
>pfam11659 DUF3261 Protein of unknown function (DUF3261). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.06 E-value=59 Score=13.06 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=12.6
Q ss_pred HHHCCCCCC--------CCCEEEECCCCCC
Q ss_conf 863048899--------9860797078887
Q gi|254780141|r 25 SLSSCFFHN--------NPVNIYDLTESTK 46 (208)
Q Consensus 25 ~l~~c~~~~--------~p~~~Y~L~~~~~ 46 (208)
.++||+..+ .|-..|.|++++.
T Consensus 5 lL~gCs~~p~~~~~v~la~~~~~~Lp~p~~ 34 (154)
T pfam11659 5 LLAGCSSQPQRQTCVPLAPGVSLTLPPPAQ 34 (154)
T ss_pred EEEHHHCCCCCCCCEEECCCCEEECCCCCC
T ss_conf 540544689889747958995698789854
No 119
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=20.06 E-value=59 Score=13.06 Aligned_cols=36 Identities=19% Similarity=-0.034 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCC
Q ss_conf 402477789999999999999986304889998607970788876
Q gi|254780141|r 3 KKLNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKY 47 (208)
Q Consensus 3 ~~~~~~~r~~~~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~ 47 (208)
+||.+-+|..-. ..+++.++.|+||.. -.|+|..+.
T Consensus 1 ~~~~~~~~~~~~--l~l~~~~~lLsGC~~-------~~LdPkGpv 36 (305)
T PRK10525 1 MRLRKYNKSLGW--LSLFAGTVLLSGCNS-------ALLDPKGQI 36 (305)
T ss_pred CCHHHHHHHHHH--HHHHHHHHHHCCCCC-------CCCCCCCHH
T ss_conf 946677778999--999999998667876-------328999877
Done!