HHsearch alignment of GI: 254780141 and MMDB domain: 2iqi_A_

>2iqi_A (A:) Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV}
Probab=100.00  E-value=1.4e-38  Score=236.50  Aligned_cols=178  Identities=26%  Similarity=0.455  Sum_probs=165.6

Q ss_pred             HHHCCCCCCCCCEEEECCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             8630488999860797078887-666666662089815301200068637899469769981466012568999999999
Q gi|254780141|r   25 SLSSCFFHNNPVNIYDLTESTK-YDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLI  103 (208)
Q Consensus        25 ~l~~c~~~~~p~~~Y~L~~~~~-~~~~~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~  103 (208)
                      .|+||++++  ++||.|+++.. .......++.|.|.+|.++++|++++|+|+.++++++++.+|||+++|++||++.|.
T Consensus         1 ~LsGCss~p--~~~Y~L~~~~~~~~~~~~~~~~i~v~~v~~~~~l~~~~iv~~~~~~~~~~~~~~rWa~~~~~~l~~~L~   78 (192)
T 2iqi_A            1 SLSLGDQKP--ATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVV   78 (192)
T ss_dssp             -----------CEEECCCCCCCCCTTSCCCCSEEEECCCBCCTTTSSSSCEEESSTTCCEECTTEEESSCHHHHHHHHHH
T ss_pred             CCCCCCCCC--CCEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCEEEEECCCEEEECCCCCHHCCHHHHHHHHHH
T ss_conf             967889999--557864788888988898753699876334001067877998389889773678110387899999999


Q ss_pred             HHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEECCCC---EEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf             999731694065037677788359999999999635874---79999999999457882778999999995277998899
Q gi|254780141|r  104 ANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHF  180 (208)
Q Consensus       104 ~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~~~~---~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~  180 (208)
                      ++|++.+.+..|++++++..+||+|+++|++|+++++++   ++++.++|.+++.+++++++++.|+.++|+.++++.++
T Consensus        79 ~~L~~~~~~~~v~~~~~~~~~d~~L~~~i~~f~~~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~f~~~~~~~~~~~~~~  158 (192)
T 2iqi_A           79 RAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAV  158 (192)
T ss_dssp             HHHHTTSSCSEEECC-----CCEEEEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSSSHHHH
T ss_pred             HHHHHHCCCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHH
T ss_conf             99996099736756888888887999999997877168885379999999997579983789988999977788998999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999997397
Q gi|254780141|r  181 IQSLNRAFSRISSEIIDWTLSSLP  204 (208)
Q Consensus       181 v~Al~~Al~~l~~~ia~w~~~~~p  204 (208)
                      |+||++|+++++++|++|+.+.+|
T Consensus       159 v~A~~~al~~l~~~ia~~i~~~~~  182 (192)
T 2iqi_A          159 AAAFEQALTQVTTELVGWTLITGQ  182 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999998655