Query gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 208 No_of_seqs 115 out of 533 Neff 8.8 Searched_HMMs 33803 Date Sun May 22 11:00:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780141.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2iqi_A Hypothetical protein X 100.0 1.4E-38 4.1E-43 236.5 21.6 178 25-204 1-182 (192) 2 >2jxp_A Putative lipoprotein B 95.1 0.19 5.7E-06 26.7 12.6 106 94-202 23-139 (155) 3 >1p99_A Hypothetical protein P 86.9 0.14 4.2E-06 27.5 0.0 31 3-33 1-31 (183) 4 >3c75_A Amicyanin; copper prot 75.4 4.8 0.00014 18.8 4.6 72 8-84 1-72 (132) 5 >2voz_A FUTA2, periplasmic iro 75.2 0.68 2E-05 23.6 0.0 103 6-109 2-118 (346) 6 >3k6v_A Solute-binding protein 70.5 1 3E-05 22.6 0.0 30 1-33 1-30 (185) 7 >3c9h_A ABC transporter, subst 44.1 2.4 7.1E-05 20.5 -1.9 23 9-31 1-23 (355) 8 >1twy_A ABC transporter, perip 41.7 7.8 0.00023 17.7 0.5 32 9-40 1-34 (290) 9 >2hqs_A Protein TOLB; TOLB, PA 40.7 21 0.00063 15.2 9.7 72 92-169 16-105 (129) 10 >2w7y_A FCSSBP, probable sugar 39.2 7.3 0.00022 17.8 0.0 47 70-116 99-150 (185) 11 >2zzv_A ABC transporter, solut 37.0 8.3 0.00025 17.5 0.0 37 5-41 1-38 (361) 12 >3e4r_A Nitrate transport prot 30.6 19 0.00057 15.4 1.0 27 179-205 132-161 (181) 13 >2g29_A Nitrate transport prot 30.2 16 0.00048 15.9 0.6 27 6-32 1-27 (381) 14 >2vzs_A CSXA, EXO-beta-D-gluco 28.5 19 0.00056 15.5 0.7 37 4-42 2-38 (225) 15 >2yz3_A Metallo-beta-lactamase 27.6 36 0.0011 13.9 2.9 31 57-87 56-86 (158) 16 >1toa_A Tromp-1, protein (peri 26.6 16 0.00047 15.9 0.0 25 84-108 134-159 (195) 17 >1kmo_A FECA, iron(III) dicitr 25.5 17 0.0005 15.7 0.0 22 3-24 2-23 (774) 18 >1v25_A Long-chain-fatty-acid- 22.6 39 0.0011 13.7 1.4 28 63-90 26-53 (215) 19 >2vx5_A Cellvibrio japonicus m 21.9 25 0.00073 14.8 0.3 14 8-21 3-16 (396) No 1 >>2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} (A:) Probab=100.00 E-value=1.4e-38 Score=236.50 Aligned_cols=178 Identities=26% Similarity=0.455 Sum_probs=165.6 Q ss_pred HHHCCCCCCCCCEEEECCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHH Q ss_conf 8630488999860797078887-666666662089815301200068637899469769981466012568999999999 Q gi|254780141|r 25 SLSSCFFHNNPVNIYDLTESTK-YDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLI 103 (208) Q Consensus 25 ~l~~c~~~~~p~~~Y~L~~~~~-~~~~~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~ 103 (208) .|+||++++ ++||.|+++.. .......++.|.|.+|.++++|++++|+|+.++++++++.+|||+++|++||++.|. T Consensus 1 ~LsGCss~p--~~~Y~L~~~~~~~~~~~~~~~~i~v~~v~~~~~l~~~~iv~~~~~~~~~~~~~~rWa~~~~~~l~~~L~ 78 (192) T 2iqi_A 1 SLSLGDQKP--ATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVV 78 (192) T ss_dssp -----------CEEECCCCCCCCCTTSCCCCSEEEECCCBCCTTTSSSSCEEESSTTCCEECTTEEESSCHHHHHHHHHH T ss_pred CCCCCCCCC--CCEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCEEEEECCCEEEECCCCCHHCCHHHHHHHHHH T ss_conf 967889999--557864788888988898753699876334001067877998389889773678110387899999999 Q ss_pred HHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEECCCC---EEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHH Q ss_conf 999731694065037677788359999999999635874---79999999999457882778999999995277998899 Q gi|254780141|r 104 ANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHF 180 (208) Q Consensus 104 ~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~~~~---~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 180 (208) ++|++.+.+..|++++++..+||+|+++|++|+++++++ ++++.++|.+++.+++++++++.|+.++|+.++++.++ T Consensus 79 ~~L~~~~~~~~v~~~~~~~~~d~~L~~~i~~f~~~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~f~~~~~~~~~~~~~~ 158 (192) T 2iqi_A 79 RAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAV 158 (192) T ss_dssp HHHHTTSSCSEEECC-----CCEEEEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSSSHHHH T ss_pred HHHHHHCCCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHH T ss_conf 99996099736756888888887999999997877168885379999999997579983789988999977788998999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999997397 Q gi|254780141|r 181 IQSLNRAFSRISSEIIDWTLSSLP 204 (208) Q Consensus 181 v~Al~~Al~~l~~~ia~w~~~~~p 204 (208) |+||++|+++++++|++|+.+.+| T Consensus 159 v~A~~~al~~l~~~ia~~i~~~~~ 182 (192) T 2iqi_A 159 AAAFEQALTQVTTELVGWTLITGQ 182 (192) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999998655 No 2 >>2jxp_A Putative lipoprotein B; uncharacterized lipoprotein B, structure, northeast structural genomics consortium, NESG, PSI-2; NMR {Nitrosomonas europaea atcc 19718} (A:) Probab=95.06 E-value=0.19 Score=26.73 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=68.2 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEEC-----CCC----EEEEEEEEEEEECCCCCEEEEE Q ss_conf 8999999999999731694065037677788359999999999635-----874----7999999999945788277899 Q gi|254780141|r 94 LPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINI-----DRH----CAIITMSLKIINAHDNSLVGQK 164 (208) Q Consensus 94 p~~~l~~~L~~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~-----~~~----~a~i~~~~~l~~~~~~~~~~~~ 164 (208) +...+.+.|.+.|...+....+. .+..+|+.|.+.+..+.... ++. +..+.+.+.+.+.+++.++..+ T Consensus 23 ~~~~l~~~L~~~l~~~g~~~iv~---~~~~ad~~L~i~~~~~~~~~~s~~~~~~~~ey~L~~~v~~~~~~~~g~~l~~~~ 99 (155) T 2jxp_A 23 AGLTIGSDLERVISTHTRAKVVN---KAEKSEAIIQIVHAIREKRILSLSESGRVREFELVYRVAARLLDAHNAELASLQ 99 (155) T ss_dssp SCCHHHHHHHHHHHHHSSCEEES---SGGGCSEEEEEEEEEEEEEECCEETTTEECEEEEEEEEEEEEEETTSCEEECCC T ss_pred CCCHHHHHHHHHHHHCCCEEEEC---CCCCCCEEEEEECCEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEECCCE T ss_conf 98679999999998659828641---776773499992047468998542787257899999999999979997752767 Q ss_pred EEEEEEEC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999952--779988999999999999999999999973 Q gi|254780141|r 165 VFHVEEKL--EKDNKLHFIQSLNRAFSRISSEIIDWTLSS 202 (208) Q Consensus 165 ~f~~~~~~--~~~~~~~~v~Al~~Al~~l~~~ia~w~~~~ 202 (208) .|+..... .+....+--...+.+.+++.++++.-++.. T Consensus 100 ~~~~~r~y~~~~~~~~a~~~e~~~l~~~l~~~la~qi~~r 139 (155) T 2jxp_A 100 EIRLTRILPFLDAQELAKAAEEEMLYKDMQKDAVQQILRQ 139 (155) T ss_dssp EEEEEEEEECCSSCHHHHTTHHHHHHHHHHHHHHHHHHHH T ss_pred EEEEEEEEEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999999755956762419999999999999999999999 No 3 >>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295) Probab=86.89 E-value=0.14 Score=27.47 Aligned_cols=31 Identities=3% Similarity=-0.196 Sum_probs=22.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 4024777899999999999999863048899 Q gi|254780141|r 3 KKLNKIIKKKIISCSLAVLLCTSLSSCFFHN 33 (208) Q Consensus 3 ~~~~~~~r~~~~~~~l~~~~~~~l~~c~~~~ 33 (208) |++.+|++++++.+++++++.+++|||+... T Consensus 1 M~~r~~~~k~~~~~~~~~~l~l~~~g~~~~~ 31 (183) T 1p99_A 1 MGHHHHHHDYDIPTTENLYFQGAHMGIQRPT 31 (183) T ss_dssp ------------------------------- T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC T ss_conf 9865555556773178899999851478998 No 4 >>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} (A:) Probab=75.37 E-value=4.8 Score=18.81 Aligned_cols=72 Identities=6% Similarity=0.056 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEE Q ss_conf 77899999999999999863048899986079707888766666666208981530120006863789946976998 Q gi|254780141|r 8 IIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQY 84 (208) Q Consensus 8 ~~r~~~~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~~~~~~~~~~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~ 84 (208) |++++.+...++++.++.+.+|.........+.+...............+... ...+..+.|-++.+ ..++. T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~----~~~f~p~~i~v~~G-d~V~~ 72 (132) T 3c75_A 1 MISAKTLRPAIAAIALFAIGATGAWAQDKITVTSEKPVAAADVPADAVVVGIE----KMKYLTPEVTIKAG-ETVYW 72 (132) T ss_dssp --------------------------CCSEEESCSSCEEGGGSCTTSEEEEEE----TTEESSSEEEECTT-CEEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE----CCEEECCEEEECCC-CEEEE T ss_conf 94156799999999999850455444663322677886556678766699856----08897999998999-99999 No 5 >>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* (A:) Probab=75.17 E-value=0.68 Score=23.63 Aligned_cols=103 Identities=6% Similarity=-0.063 Sum_probs=45.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC--C--CEEEECCCCCCCC---CCCCCCCCEEEECCCCCC-------CCCCC Q ss_conf 47778999999999999998630488999--8--6079707888766---666666208981530120-------00686 Q gi|254780141|r 6 NKIIKKKIISCSLAVLLCTSLSSCFFHNN--P--VNIYDLTESTKYD---ESVQRHIQLIITEPITEK-------ILNSE 71 (208) Q Consensus 6 ~~~~r~~~~~~~l~~~~~~~l~~c~~~~~--p--~~~Y~L~~~~~~~---~~~~~~~~i~v~~~~~~~-------~l~~~ 71 (208) .+-+++++..++++++++++++||++... . .++|.-....... ..-...-.+.|..-.... .=+.+ T Consensus 2 ~k~m~r~~~~~~~~~~~~~~~~~c~~~~~~~~~~i~~~~~~~~~~~~~~~~~F~~~~~i~v~~~~~~~~l~~~~~~g~~p 81 (346) T 2voz_A 2 TTKISRRTFFVGGTALTALVVANLPRRASAQSRTINLYSSRHYNTDDALYDAFGEVNLIEASAEELIERIQSEGANSPGD 81 (346) T ss_dssp --------------------------------CEEEEEESCCCTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCCCS T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEEECCCCCHHHHHHHHHCEEEEEECCHHHHHHHHHHHCCCCCCC T ss_conf 86033999999999999999986344301139979998799831369999742268889847499999999735899986 Q ss_pred EEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 37899469769981466012568999999999999731 Q gi|254780141|r 72 DIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENN 109 (208) Q Consensus 72 ~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~~~L~~~ 109 (208) .|+. .+...+..+...-+..++.+.+........... T Consensus 82 Dv~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~ 118 (346) T 2voz_A 82 ILFT-VDAGMLWRAEQAGLFQPVRSGKLNERIPENLRH 118 (346) T ss_dssp EEEE-ESHHHHHHHHHTTCBCCCCCHHHHHHSCGGGBC T ss_pred EEEE-CCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHC T ss_conf 7852-346899999874312431456676537254421 No 6 >>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354) Probab=70.54 E-value=1 Score=22.64 Aligned_cols=30 Identities=7% Similarity=-0.009 Sum_probs=12.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 974024777899999999999999863048899 Q gi|254780141|r 1 MDKKLNKIIKKKIISCSLAVLLCTSLSSCFFHN 33 (208) Q Consensus 1 m~~~~~~~~r~~~~~~~l~~~~~~~l~~c~~~~ 33 (208) |++.+++-.- ..+.++++++++++||+... T Consensus 1 Mkk~~~~k~~---~~~~~~~~~~~~lagC~~~~ 30 (185) T 3k6v_A 1 MKHHHHHHPM---SDYDIPTTENLYFQGAMADN 30 (185) T ss_dssp --------------------------------- T ss_pred CCCCCCCCCC---CCCCCHHHHHHHHHHEECCC T ss_conf 9865467875---34652426666643101258 No 7 >>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:) Probab=44.11 E-value=2.4 Score=20.54 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 78999999999999998630488 Q gi|254780141|r 9 IKKKIISCSLAVLLCTSLSSCFF 31 (208) Q Consensus 9 ~r~~~~~~~l~~~~~~~l~~c~~ 31 (208) ||+++..+.++++++++|++|++ T Consensus 1 Mkk~~~~~~~~~~~~~~la~c~~ 23 (355) T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAV 23 (355) T ss_dssp ---------------CEEEEEEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHH T ss_conf 93699999999999999999874 No 8 >>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} (A:) Probab=41.70 E-value=7.8 Score=17.66 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCC--CCEEEE Q ss_conf 78999999999999998630488999--860797 Q gi|254780141|r 9 IKKKIISCSLAVLLCTSLSSCFFHNN--PVNIYD 40 (208) Q Consensus 9 ~r~~~~~~~l~~~~~~~l~~c~~~~~--p~~~Y~ 40 (208) ||++.+.+.+++++++++++|+.... ..+.|. T Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 34 (290) T 1twy_A 1 MSLIRMALAAVCALLFSITTMTPFVQASEITISG 34 (290) T ss_dssp ---------------------------CEEEEEE T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE T ss_conf 9608999999999999998454311387599998 No 9 >>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} (A:12-140) Probab=40.69 E-value=21 Score=15.17 Aligned_cols=72 Identities=14% Similarity=0.292 Sum_probs=45.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEECCCC----------------CCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEC Q ss_conf 56899999999999973169406503767----------------77883599999999996358747999999999945 Q gi|254780141|r 92 DKLPRMIQLKLIANFENNGKISTVVKPNQ----------------GIYADYQIISAIRSFEINIDRHCAIITMSLKIINA 155 (208) Q Consensus 92 ~~p~~~l~~~L~~~L~~~~~~~~v~~~~~----------------~~~~~~~L~~~I~~f~~~~~~~~a~i~~~~~l~~~ 155 (208) +++++.+.+.+..+|++++.|..+..... ....+|.+.+.+.... ++ +. .+.++|++. T Consensus 16 ~~~~~~~~~~i~~dL~~~g~f~vi~~~~~~~~~~~~~~~~~~~~~~lga~~vv~G~v~~~g---~g-~~--~v~~~L~Dv 89 (129) T 2hqs_A 16 GAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVGQVTPNP---DG-SY--NVAYQLVDT 89 (129) T ss_dssp SSCSSCHHHHHHHHHHHTTSEEECCGGGCSCCCSSGGGCCHHHHHTTTCCEEEEEEEEECT---TS-CE--EEEEEEEEC T ss_pred CCCHHHHHHHHHHHHHHCCCCEECCHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECC---CC-CE--EEEEEEEEE T ss_conf 6405789999998787488836238677446888535648679865399799997654057---62-07--999999981 Q ss_pred --CCCCEEEEEEEEEE Q ss_conf --78827789999999 Q gi|254780141|r 156 --HDNSLVGQKVFHVE 169 (208) Q Consensus 156 --~~~~~~~~~~f~~~ 169 (208) .+++++..+.|+.. T Consensus 90 ~~~~g~~l~~~~~~~~ 105 (129) T 2hqs_A 90 GGAPGTVLAQNSYKVN 105 (129) T ss_dssp SSSTTCEEEEEEEEEC T ss_pred CCCCCCCCCCCEEEEC T ss_conf 2553201024045304 No 10 >>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349) Probab=39.21 E-value=7.3 Score=17.81 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=26.9 Q ss_pred CCEEEEEECCCEEEEECCCCCCCCHHHHHHH-----HHHHHHHHHCCCEEEE Q ss_conf 8637899469769981466012568999999-----9999997316940650 Q gi|254780141|r 70 SEDIIVRSSPIEIQYLIGSQWSDKLPRMIQL-----KLIANFENNGKISTVV 116 (208) Q Consensus 70 ~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~-----~L~~~L~~~~~~~~v~ 116 (208) .+.|++-..+.....+...-|..|+.+.+.. .+.+.....++...+. T Consensus 99 ~PDIi~~~~~~~~~~~~~~G~l~dL~d~id~d~~~~~~~~~~~~d~~~~~~~ 150 (185) T 2w7y_A 99 FPDVIDLAGNAVSLAAIEQKLVLDLKPYIDSNKLEKNVGLNYKQNGGGITIS 150 (185) T ss_dssp CCSEEECTTCCCCHHHHHTTCBCCCHHHHHHTTCHHHHTTHHHHTCCCEEEB T ss_pred CCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 9829996873899999978984424765433233343588997356415776 No 11 >>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A (A:) Probab=37.00 E-value=8.3 Score=17.50 Aligned_cols=37 Identities=3% Similarity=0.013 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCEEEEC Q ss_conf 24777899999999999999863-04889998607970 Q gi|254780141|r 5 LNKIIKKKIISCSLAVLLCTSLS-SCFFHNNPVNIYDL 41 (208) Q Consensus 5 ~~~~~r~~~~~~~l~~~~~~~l~-~c~~~~~p~~~Y~L 41 (208) |++|.|+.++...++++++++|. +|.....+.....+ T Consensus 1 M~~~~rr~~l~~~~~~~~~~a~~~~~~~a~a~~~~l~~ 38 (361) T 2zzv_A 1 MKRVSRRAFLRRLGVGVAATAAFSPLAVAQARRYRWRI 38 (361) T ss_dssp -------------------------------CCEEEEE T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 99773999999999999999999888874377369999 No 12 >>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:1-109,A:208-279) Probab=30.59 E-value=19 Score=15.41 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHCCC Q ss_conf 999999999999999---999999973977 Q gi|254780141|r 179 HFIQSLNRAFSRISS---EIIDWTLSSLPL 205 (208) Q Consensus 179 ~~v~Al~~Al~~l~~---~ia~w~~~~~p~ 205 (208) .+++|+.++.+-+.+ +.++.+...+++ T Consensus 132 ~~~~a~~~a~~~~~~~~~e~~~~~a~~~~~ 161 (181) T 3e4r_A 132 QVMGTLNQADGLLERDRAGSIKTLAQVSGL 161 (181) T ss_dssp HHHHHHHHHHTHHHHTHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCC T ss_conf 999999999999997999999999999890 No 13 >>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} (A:1-381) Probab=30.17 E-value=16 Score=15.86 Aligned_cols=27 Identities=0% Similarity=-0.392 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 477789999999999999986304889 Q gi|254780141|r 6 NKIIKKKIISCSLAVLLCTSLSSCFFH 32 (208) Q Consensus 6 ~~~~r~~~~~~~l~~~~~~~l~~c~~~ 32 (208) +.|.|++++..++++++++++++|+.. T Consensus 1 t~m~rr~~l~~~~~~~~~~~~~~~~~~ 27 (381) T 2g29_A 1 TSPTTTSTGTGTGSSTDQAISPLVEGE 27 (381) T ss_dssp --------------------------- T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 998653524377766433346666767 No 14 >>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} (A:1-225) Probab=28.54 E-value=19 Score=15.46 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 024777899999999999999863048899986079707 Q gi|254780141|r 4 KLNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLT 42 (208) Q Consensus 4 ~~~~~~r~~~~~~~l~~~~~~~l~~c~~~~~p~~~Y~L~ 42 (208) +|..|.++.++ .+++++++.++.|.....+...+.+. T Consensus 2 ~~~~m~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~ 38 (225) T 2vzs_A 2 SFRQKRTRIPL--LAMTVTALAAAVCGVTTAPAATGAEV 38 (225) T ss_dssp --------------------------------------- T ss_pred CCCCCCCEEEE--HHHHHHHHHHHHHHCCCCCHHHCCCC T ss_conf 75433322003--69999999999740011510102334 No 15 >>2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} (A:1-158) Probab=27.61 E-value=36 Score=13.92 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=16.6 Q ss_pred EEEECCCCCCCCCCCEEEEEECCCEEEEECC Q ss_conf 8981530120006863789946976998146 Q gi|254780141|r 57 LIITEPITEKILNSEDIIVRSSPIEIQYLIG 87 (208) Q Consensus 57 i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~ 87 (208) +...++.....+..+..+++.+.+.+-.+.+ T Consensus 56 ~~~~~~~~~~~~~~n~~li~~~~~~iliD~g 86 (158) T 2yz3_A 56 HIATQSFDGAVYPSNGLIVRDGDELLLIDTA 86 (158) T ss_dssp EEEEEEETTEEEEEEEEEEEETTEEEEESCC T ss_pred EEECCCCCCCEEEEEEEEEEECCEEEEEECC T ss_conf 9703467896342089999989999999099 No 16 >>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:1-195) Probab=26.56 E-value=16 Score=15.91 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=12.1 Q ss_pred EECCCCCCCCHHH-HHHHHHHHHHHH Q ss_conf 8146601256899-999999999973 Q gi|254780141|r 84 YLIGSQWSDKLPR-MIQLKLIANFEN 108 (208) Q Consensus 84 ~~~~~rW~~~p~~-~l~~~L~~~L~~ 108 (208) .+..|-|.+|-.. .+-+.+.+.|.. T Consensus 134 ~~dpH~W~~p~~~~~~a~~i~~~L~~ 159 (195) T 1toa_A 134 EFDPHVWFDVKLWSYSVKAVYESLCK 159 (195) T ss_dssp CBCCCGGGSHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHH T ss_conf 23420230733689999999999998 No 17 >>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} (A:) Probab=25.48 E-value=17 Score=15.73 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=9.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4024777899999999999999 Q gi|254780141|r 3 KKLNKIIKKKIISCSLAVLLCT 24 (208) Q Consensus 3 ~~~~~~~r~~~~~~~l~~~~~~ 24 (208) |+|+.|.|...+.+++++++++ T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~ 23 (774) T 1kmo_A 2 TPLRVFRKTTPLVNTIRLSLLP 23 (774) T ss_dssp ---------------------- T ss_pred CCCHHHHHHHHHHHHHHHHHHH T ss_conf 8423332144899999999998 No 18 >>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} (A:1-50,A:198-362) Probab=22.60 E-value=39 Score=13.71 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=18.3 Q ss_pred CCCCCCCCCEEEEEECCCEEEEECCCCC Q ss_conf 0120006863789946976998146601 Q gi|254780141|r 63 ITEKILNSEDIIVRSSPIEIQYLIGSQW 90 (208) Q Consensus 63 ~~~~~l~~~~Iv~~~~~~~~~~~~~~rW 90 (208) .+...+-.++|+.|..++.+..|.|||. T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~Hr~ 53 (215) T 1v25_A 26 RAAALFGRKEVVSRLHTGEVHRTTYHRA 53 (215) T ss_dssp HHHHHSTTCEEEEECTTSCEEEEEHHHH T ss_pred HHHHHCCCCEEEEECCCCCEEEECHCHH T ss_conf 9999769971999847995579729114 No 19 >>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:) Probab=21.91 E-value=25 Score=14.82 Aligned_cols=14 Identities=0% Similarity=-0.242 Sum_probs=4.6 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 77899999999999 Q gi|254780141|r 8 IIKKKIISCSLAVL 21 (208) Q Consensus 8 ~~r~~~~~~~l~~~ 21 (208) |+|+.++.+.++++ T Consensus 3 ~~k~~~~~~~~~~~ 16 (396) T 2vx5_A 3 EKPAESAAAVADSA 16 (396) T ss_dssp -------------- T ss_pred CCHHHHHHHHHHCC T ss_conf 66256677776034 Done!