RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] (208 letters) >gnl|CDD|33031 COG3218, COG3218, ABC-type uncharacterized transport system, auxiliary component [General function prediction only]. Length = 205 Score = 150 bits (381), Expect = 2e-37 Identities = 60/191 (31%), Positives = 110/191 (57%), Gaps = 4/191 (2%) Query: 18 LAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHI--QLIITEPITEKILNSEDIIV 75 A+ L +L+ C P + Y L+ D + + QL+I P K L+S I+V Sbjct: 15 AALALAATLAGCGPEAAPNDTYSLSVHPPVDSNGPKRKTWQLLIARPTALKALDSPRIVV 74 Query: 76 RSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSF 135 R S EIQY G+QW D LP ++Q +L+ FE++G+ + + +P G+ ADYQ+I +R+F Sbjct: 75 RPSRGEIQYYAGAQWGDPLPNLVQDRLVQAFEDSGRFAGLGRPGSGLAADYQLILDLRAF 134 Query: 136 EI--NIDRHCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISS 193 EI A+I +S++++N + ++ +VF + ++ +++ ++AF+++++ Sbjct: 135 EIQYVTGAPTAVIEISVRLLNDRNGTVRASRVFRASQPVDGKGNAAVVKAFDKAFAQLTN 194 Query: 194 EIIDWTLSSLP 204 EI+ WTLS+L Sbjct: 195 EIVGWTLSTLS 205 >gnl|CDD|146492 pfam03886, DUF330, Protein of unknown function (DUF330). The proteins in this family are uncharacterized. The proteins are 170-190 amino residues in length. Length = 160 Score = 82.0 bits (203), Expect = 1e-16 Identities = 27/145 (18%), Positives = 64/145 (44%), Gaps = 3/145 (2%) Query: 53 RHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKI 112 QL + L+ I+VR+ ++Q +W++ L I+ L + Sbjct: 16 PAWQLEVGPVSVPDYLDRPQIVVRTGDGQLQVAENHRWAEPLDDQIRRALARDLSQRLPS 75 Query: 113 STVVKPNQ--GIYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSLVGQKVFHVEE 170 + V P G DY++ ++ FE + A+++ ++++A ++ + F + E Sbjct: 76 ARVAAPPWPLGGTPDYRLQVDVQRFEGDPGGT-AVLSAQWRLLDAGGQRVLASRSFRISE 134 Query: 171 KLEKDNKLHFIQSLNRAFSRISSEI 195 L D + +L++A ++++ +I Sbjct: 135 PLAGDGYAALVAALSQALAQLADQI 159 >gnl|CDD|34465 COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 403 Score = 26.8 bits (59), Expect = 4.8 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 1 MDKKLNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQ 52 MDK LN +II+ A+LL +++ NNP++ T T Y ++ Sbjct: 1 MDKFLNSPWLIRIIAFFFAILLFLYVNN-NNFNNPISTIKPTSET-YTLTLT 50 >gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 371 Score = 26.4 bits (59), Expect = 5.3 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 3/35 (8%) Query: 126 YQIISAIRSFEINIDRHC---AIITMSLKIINAHD 157 Y+ + AI + +II+ + ++ HD Sbjct: 289 YERLLAIPGIRLVPAVAERRPSIISFNFPGVHPHD 323 >gnl|CDD|145232 pfam01947, DUF98, Protein of unknown function (DUF98). This is a family of uncharacterized proteins. Length = 149 Score = 26.1 bits (58), Expect = 6.7 Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 48 DESVQRHIQLIITEPITEKILNSEDI 73 D S RH+QL+ EP ++ I Sbjct: 4 DGSPTRHLQLLTGEPTEVDLIAMSPI 29 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.135 0.379 Gapped Lambda K H 0.267 0.0668 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,361,074 Number of extensions: 115216 Number of successful extensions: 256 Number of sequences better than 10.0: 1 Number of HSP's gapped: 252 Number of HSP's successfully gapped: 10 Length of query: 208 Length of database: 6,263,737 Length adjustment: 89 Effective length of query: 119 Effective length of database: 4,340,536 Effective search space: 516523784 Effective search space used: 516523784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.1 bits)