RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780141|ref|YP_003064554.1| putative ABC transporter
protein [Candidatus Liberibacter asiaticus str. psy62]
         (208 letters)



>gnl|CDD|33031 COG3218, COG3218, ABC-type uncharacterized transport system,
           auxiliary component [General function prediction only].
          Length = 205

 Score =  150 bits (381), Expect = 2e-37
 Identities = 60/191 (31%), Positives = 110/191 (57%), Gaps = 4/191 (2%)

Query: 18  LAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHI--QLIITEPITEKILNSEDIIV 75
            A+ L  +L+ C     P + Y L+     D +  +    QL+I  P   K L+S  I+V
Sbjct: 15  AALALAATLAGCGPEAAPNDTYSLSVHPPVDSNGPKRKTWQLLIARPTALKALDSPRIVV 74

Query: 76  RSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSF 135
           R S  EIQY  G+QW D LP ++Q +L+  FE++G+ + + +P  G+ ADYQ+I  +R+F
Sbjct: 75  RPSRGEIQYYAGAQWGDPLPNLVQDRLVQAFEDSGRFAGLGRPGSGLAADYQLILDLRAF 134

Query: 136 EI--NIDRHCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISS 193
           EI        A+I +S++++N  + ++   +VF   + ++       +++ ++AF+++++
Sbjct: 135 EIQYVTGAPTAVIEISVRLLNDRNGTVRASRVFRASQPVDGKGNAAVVKAFDKAFAQLTN 194

Query: 194 EIIDWTLSSLP 204
           EI+ WTLS+L 
Sbjct: 195 EIVGWTLSTLS 205


>gnl|CDD|146492 pfam03886, DUF330, Protein of unknown function (DUF330).  The
           proteins in this family are uncharacterized. The
           proteins are 170-190 amino residues in length.
          Length = 160

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 27/145 (18%), Positives = 64/145 (44%), Gaps = 3/145 (2%)

Query: 53  RHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKI 112
              QL +        L+   I+VR+   ++Q     +W++ L   I+  L  +       
Sbjct: 16  PAWQLEVGPVSVPDYLDRPQIVVRTGDGQLQVAENHRWAEPLDDQIRRALARDLSQRLPS 75

Query: 113 STVVKPNQ--GIYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSLVGQKVFHVEE 170
           + V  P    G   DY++   ++ FE +     A+++   ++++A    ++  + F + E
Sbjct: 76  ARVAAPPWPLGGTPDYRLQVDVQRFEGDPGGT-AVLSAQWRLLDAGGQRVLASRSFRISE 134

Query: 171 KLEKDNKLHFIQSLNRAFSRISSEI 195
            L  D     + +L++A ++++ +I
Sbjct: 135 PLAGDGYAALVAALSQALAQLADQI 159


>gnl|CDD|34465 COG4856, COG4856, Uncharacterized protein conserved in bacteria
          [Function unknown].
          Length = 403

 Score = 26.8 bits (59), Expect = 4.8
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 1  MDKKLNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQ 52
          MDK LN     +II+   A+LL   +++    NNP++    T  T Y  ++ 
Sbjct: 1  MDKFLNSPWLIRIIAFFFAILLFLYVNN-NNFNNPISTIKPTSET-YTLTLT 50


>gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain is
           found in amino transferases, and other enzymes including
           cysteine desulphurase EC:4.4.1.-.
          Length = 371

 Score = 26.4 bits (59), Expect = 5.3
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 126 YQIISAIRSFEINIDRHC---AIITMSLKIINAHD 157
           Y+ + AI    +         +II+ +   ++ HD
Sbjct: 289 YERLLAIPGIRLVPAVAERRPSIISFNFPGVHPHD 323


>gnl|CDD|145232 pfam01947, DUF98, Protein of unknown function (DUF98).  This is a
          family of uncharacterized proteins.
          Length = 149

 Score = 26.1 bits (58), Expect = 6.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 48 DESVQRHIQLIITEPITEKILNSEDI 73
          D S  RH+QL+  EP    ++    I
Sbjct: 4  DGSPTRHLQLLTGEPTEVDLIAMSPI 29


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,361,074
Number of extensions: 115216
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 10
Length of query: 208
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,340,536
Effective search space: 516523784
Effective search space used: 516523784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)