HHsearch alignment for GI: 254780142 and conserved domain: COG0086
>COG0086 RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription].
Probab=100.00 E-value=0 Score=1601.13 Aligned_cols=780 Identities=50% Similarity=0.741 Sum_probs=704.4
Q ss_pred CCEEEEEEECCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40536898458867885014489717554254568756887336213685667721566415634488356757885304
Q gi|254780142|r 16 RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTL 95 (1398)
Q Consensus 16 ~~i~~i~f~l~spe~I~~~S~~ev~~~et~n~~~~kP~~~Gl~d~ri~g~~~d~~c~Cg~~~~~~~~g~~C~~Cg~~~~~ 95 (1398)
T Consensus 3 ~~~~-i~~gl~sp~~ir~~s-~ev~~pet~~~~~-~P~~~Gl~d~ri~~~~~~~~C~Cg~~~~~---------------- 63 (808)
T COG0086 3 RIFD-IKFGLASPEEIRSWS-GEVKKPETINYRT-KPERGGLFDERIFGPDKDYECTCGKYKRI---------------- 63 (808)
T ss_pred CEEE-EEEECCCHHHHHHCC-EEECCCCCCCCCC-CCCCCCCCCHHHCCCCCCCEECCCCCCCC----------------
T ss_conf 3003-798058989997443-3876702027888-51688752043169899840228885675----------------
Q ss_pred CCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 77578767720027762201301225789999809996563013321112321788651043223699999886763585
Q gi|254780142|r 96 SSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQ 175 (1398)
Q Consensus 96 ~~~r~ghfGhIeLa~PV~Hi~f~k~~~~~i~~~l~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (1398)
T Consensus 64 ~~---~~~GhIeLa~Pv~hi~f~k~~~~----~L~~~~~~~~~v~~~~~~~~~--~-~~l~~~~~~~~~~~-------~~ 126 (808)
T COG0086 64 CP---GGFGHIELAAPVAHIWFFKSIPS----LLDMTCRDCERVLYFEAYVVL--G-TDLEKIQLLNETEY-------VY 126 (808)
T ss_pred CC---CCCEEEEEECCEEEECHHHCCHH----HHHHHHHHHHHHHHHHHHHHH--C-CCHHHHCCCCHHHH-------HH
T ss_conf 88---97314776263588335445799----985137744562567666662--5-62244214403331-------12
Q ss_pred CCEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEE
Q ss_conf 55061155267788877267488999999873103220347886447788866663489851128630450762235138
Q gi|254780142|r 176 DQFIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLV 255 (1398)
Q Consensus 176 ~~~~~~~g~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~Pewmil~~lpV~P~~~RP~v 255 (1398)
T Consensus 127 ~~~~~~~Ga~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~l~~~d~~~~~~~~pewmil~vlpV~Pp~~RP~i 200 (808)
T COG0086 127 DSFCAHCGAEAIKILLEKPDLETER----EE--ETLSPTKVKKLLKRLKVVDAFLLSGNRPEWMILTVLPVPPPDLRPSI 200 (808)
T ss_pred CCCCCCCCCCCHHHHHHCCCHHHHH----HH--HCCCHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
T ss_conf 0447898971399887367544312----13--03587889999751665677660478865368971035998888545
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 84697313100378999999986999999873983567776999999988887427767877247876506789986102
Q gi|254780142|r 256 ALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKG 335 (1398)
Q Consensus 256 ~~~~g~~~~dDlt~~~~~Ii~~N~~Lk~~~~~~ap~~i~~~~~~lLQ~~v~~~~dn~~~~~~~~~~~~rp~ks~~~rlkg 335 (1398)
T Consensus 201 ~ld~g~~a~~dl~~~~~~ii~~n~rlk~~~~~~~~-~iv~~~~~~lQ~~v~~~~Dn-~~~~~~~~-~-rPlksl~~~Lkg 276 (808)
T COG0086 201 QLDGGRFAESDLNDLYRRVINRNNRLKRLLELAAP-IIVRNEKRMLQEAVDALFDN-RRPRAVTG-G-RPLKSLSQRLKG 276 (808)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHC-CCCCCCCC-C-CCCCCHHHHHCC
T ss_conf 63898655668889999999998775776664545-77888999999999998616-89877658-9-764449998468
Q ss_pred CCCCEEECCCCCCCCCCCCEEEECCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEHHHH
Q ss_conf 37820003465100457740341255435462003489877612899999999879866630001001224882501326
Q gi|254780142|r 336 KQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLA 415 (1398)
Q Consensus 336 K~GrfR~nl~GKRVdfs~RsVI~pdP~l~~~evgvP~~~A~~L~~P~~~~~L~~~g~~~~i~~~k~~i~~~~~~v~~v~r 415 (1398)
T Consensus 277 K~GrFR~nL~GKRVd~SgRsVI~~~P~l~~~e~GvP~~~A~~L~~p~~v~~~~~~~~~~~a~~~~~~~~~~~~~~w~Vl~ 356 (808)
T COG0086 277 KQGRFRQNLLGKRVDYSGRSVISVGPNLKLNQCGVPKKMALELFKPFVVTELNIEGLRTGAKYAKRMVERRLPEVWDVLR 356 (808)
T ss_pred CCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEEHHHHHHHCCCCEEEECCCCCCCCCCHHHH
T ss_conf 77545134001511787862552799863400488799988744477987332223211771688012133565404678
Q ss_pred HHHCCCEEEECCCCCCEECCEEEEEEEEEC-CCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 665697899757631011140123589944-9547973122545467877545699746899999999998767505423
Q gi|254780142|r 416 EVVHQHVVLLNRAPSLHRLSMQAFEPKIIS-GKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLH 494 (1398)
Q Consensus 416 hl~~gd~Vl~NRqPsLHr~Simah~~~v~~-~~t~rln~~vc~pyNADFDGDEMnlHvPqs~eAraEa~~Lm~~~~niis 494 (1398)
T Consensus 357 evi~gd~Vl~NR~PtLHrlsImq~~e~vl~~gkt~rLh~lVc~~yNADFDGDeM~~Hvp~s~ea~AEa~~lm~tq~nils 436 (808)
T COG0086 357 EVIDGDPVLLNRAPTLHRLSIMQAFEPVLPEGKAIRLHPLVCEAYNADFDGDEMAVHVPASGEAAAEARGLMGTQMNILT 436 (808)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHCEEECCCCCEEECCHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 77629800015577678999986510104555335310121552456537465536575059999998864055563256
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHCCCCC----CCCCC---CEECCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 788782044025899999987336788----74468---14179999999998889867852365204645667614245
Q gi|254780142|r 495 PASGAPVTVPSQDMVLGLCYLSTVHEG----DPGEG---MLFADMGEVYHALENKIVTLHSKIRGRYKSVDKDGNSISKI 567 (1398)
Q Consensus 495 P~~g~Pi~~~~QD~i~G~y~lT~~~~~----~~~~~---~~f~~~~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~ 567 (1398)
T Consensus 437 P~~Ggpiv~~~qD~v~g~ylLt~~d~~~~~~~~~ei~l~~~~~~~~e~~~ai~~~~~~~~~k~i~~~i~~~~---~~~~i 513 (808)
T COG0086 437 PHYGGPIVAPIQDTVGGPYLLTIVDAKLPSTPVGEIYLKDEYADDREKAEAIAKKIELTTGKVIVSTISPDL---AELSI 513 (808)
T ss_pred CCCCCCEEEECCEEEECCEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEEEEECCC---CCCEE
T ss_conf 789995672020588134789983266888753489721233552255677754622126458999850378---75259
Q ss_pred ECCCCCCCCCCEEEECCCCCEEEEECCHHCCHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHCC-CCCCCCCC-
Q ss_conf 217977511220554587510177511002013666999999980817899-987558899999998539-86132123-
Q gi|254780142|r 568 YDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKSTV-AFCDDLMRLGFRYACSSG-ISFGKDDI- 644 (1398)
Q Consensus 568 ~~tt~Gr~~~~~ilp~~~~~~~~~~~~~~~k~~~~~li~~i~~~~G~~~~~-~~l~~~~~l~~~~l~~~G-fSigi~D~- 644 (1398)
T Consensus 514 ~~t~~~~~~~~~~~~~~~d~~~~i~~~~l~~~~i~k~~~~~~~~~g~~~~~~~~~~~~dkl~~~~~~~~~~~~~~i~~~d 593 (808)
T COG0086 514 IVTTDGRRIFNRGLPEDKDVLVKIVNGKLIKGVIDKKIVTIYREYGPEVASKALVKLLDKLKNLGIKGIGGFGIGIGRKD 593 (808)
T ss_pred EEECCHHHHHHCCCCCCCCEEEEEECCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCEEEEECCC
T ss_conf 99341365554068755540257731433123413458999998183055799999999998753133424207864354
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf -2683699999999978999999886489766788878864234658999999999987611565432222468837642
Q gi|254780142|r 645 -IVPESKEKIIAEADKMVKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMS 723 (1398)
Q Consensus 645 -~~~~~k~~~i~~a~~~~~~~~~~~~~G~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~M~ 723 (1398)
T Consensus 594 ~~~~~~~~e~v~~ae~~v~~~i~~~~~g~lt~~~~~~i~e~~e~~~~e~l~~ai~~~~~~~~~~~g~~----~~~i~~m~ 669 (808)
T COG0086 594 IEAEDEKDEIVIEAEGSVLKLILQYEEGDLTRTERNNIVEIIEVLGIEALRNAIIEEIKITLEEQGLD----FVDIRHMG 669 (808)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHH
T ss_conf 32057788999999999999998764587634577875687621779999999999876667752874----02399986
Q ss_pred CCCCCCCHHHEEEEEEECCCCCCCCCC-------------CCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHCCCCCCCCC
Q ss_conf 255557842411200100002464434-------------4456663011108889897640576103221012101567
Q gi|254780142|r 724 HSGARGSIHQMRQLGGMRGLIAKPSGE-------------IIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASS 790 (1398)
Q Consensus 724 ~SGAKGS~~qi~ql~Gqq~l~gkp~G~-------------~~~~PV~~sF~~GL~p~EfFfhamgGReGLiDTAvKTA~S 790 (1398)
T Consensus 670 ~~Gs~~n~sq~~~~~G~~gv~g~r~~~~~~~~Fe~~~~~~~a~~~i~s~f~eGLt~~e~f~~~~ggR~GlvDTA~KTa~s 749 (808)
T COG0086 670 LSGARMNISQIVQLIGQQGVMGEKISVLARAAFEVTVKHLEAEGPGESSFLEGLTENEYFGHPIGGRTGLVDTALKTADS 749 (808)
T ss_pred HHHHCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCC
T ss_conf 43624489999998633203125788653222234665534554566455779972268750576653168876652346
Q ss_pred CEEEEHHHHHHCCCEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCCCCCHHHCCCCC
Q ss_conf 40110154230143277513887666512111008848865000101221144201778
Q gi|254780142|r 791 GYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPL 849 (1398)
Q Consensus 791 GYlqRrLvk~~eDl~V~~~D~~t~~g~~~~~~~~~~~~~~~l~~~~~~r~~~~di~~~~ 849 (1398)
T Consensus 750 GYl~RrLv~~~qdl~v~~d~~~~~-g~~~~~~~~~ged~~~~~~~~~~~~~~~~v~~~~ 807 (808)
T COG0086 750 GYLTRRLVDVAQDLIVQEDDCVTD-GIGVVIQFEYGEDGEDLTERILGRVLEEDVLRPV 807 (808)
T ss_pred CCCEEEEECHHCCEEEEECCEEEE-CCCEEEEEECCCCCCCHHHHHCCEEEHHHHCCCC
T ss_conf 762577310222449995482872-6855888715764428888744847453402567