HHsearch alignment for GI: 254780142 and conserved domain: COG0086
>COG0086 RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription].
Probab=99.68 E-value=8.9e-20 Score=166.75 Aligned_cols=121 Identities=25% Similarity=0.337 Sum_probs=96.8
Q ss_pred ECCCEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCE-ECHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf 4086464389999999875279999999999999999980970-061256012476286148941886454566410699
Q gi|254780142|r 1200 EKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVA-INHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRI 1278 (1398)
Q Consensus 1200 ~~gd~lt~Gsid~~eIl~vlGIEAAR~~Ii~EIq~V~~~~Gi~-IN~RHIeLIaD~MT~kg~I~~~Gdt~~i~g~~Inr~ 1278 (1398)
T Consensus 619 ~~g~lt~~~~~~i~e~~e~~~~e~l~~ai~~~~~~~~~~~g~~~~~i~~m~~~Gs~~n~sq~~~~~G------~~gv--- 689 (808)
T COG0086 619 EEGDLTRTERNNIVEIIEVLGIEALRNAIIEEIKITLEEQGLDFVDIRHMGLSGARMNISQIVQLIG------QQGV--- 689 (808)
T ss_pred HCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH------HHEE---
T ss_conf 4587634577875687621779999999999876667752874023999864362448999999863------3203---
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCCCCCCH
Q ss_conf 99999999997289875201210000145302310776504025899999974528552366532215507305655354
Q gi|254780142|r 1279 EVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGA 1358 (1398)
Q Consensus 1279 ~~~~~Nr~~~~~g~~pa~~~p~llGITKasl~t~S~Ls~ASFEeT~~vL~eAAi~ge~D~L~GvSENIIlGqliP~GTG~ 1358 (1398)
T Consensus 690 -----------------------------~g~r~~~~~~~~Fe~~~~~-~~a~~~i~s~f~eGLt~~e~f~~~~ggR~Gl 739 (808)
T COG0086 690 -----------------------------MGEKISVLARAAFEVTVKH-LEAEGPGESSFLEGLTENEYFGHPIGGRTGL 739 (808)
T ss_pred -----------------------------ECCCCCCCCCCCCCCCCCC-CEEEEEEECCCCCCCCCCEEEEECCCCCCCH
T ss_conf -----------------------------1257886532222346655-3455456645577997226875057665316
Q ss_pred H
Q ss_conf 6
Q gi|254780142|r 1359 I 1359 (1398)
Q Consensus 1359 f 1359 (1398)
T Consensus 740 v 740 (808)
T COG0086 740 V 740 (808)
T ss_pred H
T ss_conf 8