HHsearch alignment for GI: 254780142 and conserved domain: PRK00566
>PRK00566 DNA-directed RNA polymerase subunit beta'; Provisional.
Probab=100.00 E-value=0 Score=2798.08 Aligned_cols=1165 Identities=44% Similarity=0.726 Sum_probs=1039.7
Q ss_pred CCCCEEEEEEECCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86405368984588678850144897175542545687568873362136856677215664156344883567578853
Q gi|254780142|r 14 DDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRMKYKGIICEKCGVEV 93 (1398)
Q Consensus 14 ~~~~i~~i~f~l~spe~I~~~S~~ev~~~et~n~~~~kP~~~Gl~d~ri~g~~~d~~c~Cg~~~~~~~~g~~C~~Cg~~~ 93 (1398)
T Consensus 2 ~~k~i~~i~f~l~SPe~Ir~~S~~eV~~peT~n~~~~kP~~~GL~d~rifgp~~d~eC~cgk~k~~~~~g~~C~tCG~~~ 81 (1284)
T PRK00566 2 SQKGIKSLTISIASPEQILNWSKGEVTKPETINYKSLKPEPNGLFDEAIFGPVKDYECACGKYKKIKHRGKICERCGVEI 81 (1284)
T ss_pred CCCEECEEEEEECCHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97630549999429999987605587277740088998789997477346978676342676254455985899999874
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECHHHHH--HHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCHHHHCCCCHHH------
Q ss_conf 0477578767720027762201301225--78999980999656301332111232178865104322369999------
Q gi|254780142|r 94 TLSSVRRDRMAHIDLASPVAHPWFLKSL--PSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEE------ 165 (1398)
Q Consensus 94 ~~~~~r~ghfGhIeLa~PV~Hi~f~k~~--~~~i~~~l~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~------ 165 (1398)
T Consensus 82 ~~~~vr~ghfGHIeLa~PV~Higf~k~i~~ps~i~~lL~~~~k~le~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1284)
T PRK00566 82 TESIVRRERMGHIELAAPVAHIWMTKELPSPSKISLVLDISYKEVEQVVYFVNYIVLDEGNNKYDKKSIFNFKEVLDLTS 161 (1284)
T ss_pred CCCCCCCCCCCCCCCCCCEEECCEECCCCCHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCHHCHHHHHHHHHHHH
T ss_conf 50786899612513888645274635888725899986889999876640025799547876550002156899986540
Q ss_pred ---------------------------------HHHH------HHH----C----------CCCCEEECCCHHHHHHHHH
Q ss_conf ---------------------------------9886------763----5----------8555061155267788877
Q gi|254780142|r 166 ---------------------------------YVEA------VSQ----F----------GQDQFIAMMGADAIYELLI 192 (1398)
Q Consensus 166 ---------------------------------~~~~------~~~----~----------~~~~~~~~~g~~~i~~~l~ 192 (1398)
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~e~i~~~l~ 241 (1284)
T PRK00566 162 PKGSIRTRNKLRRTLRNIQERIEKELSHEQDFDYRLAVTYYQMLKDSNLPFSVKDVFNFIEKHTGVRFGIGAEAILELLE 241 (1284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 22013578999999999888766530231156665556676543002466422456654430145213777899999987
Q ss_pred HCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCHHHHHH
Q ss_conf 267488999999873103--220347886447788866663489851128630450762235138846973131003789
Q gi|254780142|r 193 ALDLQNLALTLRDQLSKS--SSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDL 270 (1398)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~~~Pewmil~~lpV~P~~~RP~v~~~~g~~~~dDlt~~ 270 (1398)
T Consensus 242 ~idl~~~~~~~~~~~~~~~~~~~~~~~~~~krl~~~~~~~~~~~rPewmiltvlpVpPp~vRPsv~ldgg~~~~dDLt~~ 321 (1284)
T PRK00566 242 KIDLEEEHEKINQALRKSDNAEDQKTKRLLRRLETIRWIKDSGSKPEWMILTRIPVTPPDTRPIIQLDGGRFTTSDINNF 321 (1284)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCHHH
T ss_conf 69989999999999742676367899999988999997762699971689842478999873459968997664321889
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 99999986999999873983567776999999988887427767877247876506789986102378200034651004
Q gi|254780142|r 271 YRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVD 350 (1398)
Q Consensus 271 ~~~Ii~~N~~Lk~~~~~~ap~~i~~~~~~lLQ~~v~~~~dn~~~~~~~~~~~~rp~ks~~~rlkgK~GrfR~nl~GKRVd 350 (1398)
T Consensus 322 l~~Ii~~N~~Lk~~~~~gap~~ii~~~~~lLQ~~V~tl~dN~~~~~p~~~~s~RplKsl~qrLKGKeGRfR~NLmGKRVD 401 (1284)
T PRK00566 322 YRKIIIRNERLKRIQETDAPSILLNNEKRLLQEAVDALFDNNSRKKPVLGKDKRPLKSLSDHLKGKQGLFRQNLLGKRVD 401 (1284)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999875998899999999999999998707787887758899834019988466554013566766205
Q ss_pred CCCCEEEECCCCCCCCCEECHHHHHHHHHHHHHHHH----HHHCC-----CCCCCCCCCCEEECCCCCEEHHHHHHHCCC
Q ss_conf 577403412554354620034898776128999999----99879-----866630001001224882501326665697
Q gi|254780142|r 351 YSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQ----LEKKG-----YVSTVKQAKKFVEKERPEVWDVLAEVVHQH 421 (1398)
Q Consensus 351 fs~RsVI~pdP~l~~~evgvP~~~A~~L~~P~~~~~----L~~~g-----~~~~i~~~k~~i~~~~~~v~~v~rhl~~gd 421 (1398)
T Consensus 402 fSaRSVIspDPnL~i~EvGVP~~~A~~Lt~P~~V~ell~~~v~nGp~~~p~a~~ik~~~~~~~~~~~~~~~i~e~~i~~~ 481 (1284)
T PRK00566 402 YSGRSVIVVGPELKMYEVGIPALMILKLFKPFIIHELIRKFDENGNEIQPIAANIKLAEQMILNQDDEIWPIVEKVIKQR 481 (1284)
T ss_pred CCCCEEEECCCCCCHHHCCCHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 67870562699765111277088887708847799999987406986675302357778998733741457799875388
Q ss_pred EEEECCCCCCEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 89975763101114012358994495479731225454678775456997468999999999987675054237887820
Q gi|254780142|r 422 VVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPV 501 (1398)
Q Consensus 422 ~Vl~NRqPsLHr~Simah~~~v~~~~t~rln~~vc~pyNADFDGDEMnlHvPqs~eAraEa~~Lm~~~~niisP~~g~Pi 501 (1398)
T Consensus 482 ~VLfNRQPSLHkmSiMahrvkv~~gkTfRLn~~vc~pYNADFDGDEMNlHvPQS~eArAEa~~Lm~v~~nilsP~~G~Pi 561 (1284)
T PRK00566 482 PVLLNRAPTLHRLGIQAFEPKIVDGKAIRLHPLVTTAFNADFDGDQMAVHVPLSKEAVAEARAILLASWHILGPKDGKPI 561 (1284)
T ss_pred EEEECCCCCCCCCEEEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf 14653776212043213577983684477334456655578887424521668999999999986244157137899953
Q ss_pred EEEHHHHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCEEE
Q ss_conf 44025899999987336788744681417999999999888986785236520464566761424521797751122055
Q gi|254780142|r 502 TVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEIL 581 (1398)
Q Consensus 502 ~~~~QD~i~G~y~lT~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~tt~Gr~~~~~il 581 (1398)
T Consensus 562 ig~iQD~i~G~y~LT~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~tt~Gk~ifs~~l 641 (1284)
T PRK00566 562 ITPTQDMVLGNYYLTTEKFPQPGEGMIFSTVDEAIRAYELKKVHIHAIIGISTKAFPNKTFSKQGILITTVGKIIFNDVL 641 (1284)
T ss_pred EECCHHHHHCCHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC
T ss_conf 40323354212211014467766532726899999998739842375123131337777656774498454331198765
Q ss_pred ECCCCCE----------------------EE----EECCHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4587510----------------------17----751100201366699999998081789998755889999999853
Q gi|254780142|r 582 PRHHEIS----------------------FD----ICNQEMIKKNISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSS 635 (1398)
Q Consensus 582 p~~~~~~----------------------~~----~~~~~~~k~~~~~li~~i~~~~G~~~~~~~l~~~~~l~~~~l~~~ 635 (1398)
T Consensus 642 p~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~i~~~~~~~~~~kk~~~~li~~l~~~~g~~~~~~~ld~i~~l~~~~~~~~ 721 (1284)
T PRK00566 642 PENFPYINDGKNLYGLNQFEIVGMGEDIRDYLKAYNLKEPFTKKTLSKVIDYLYKVSEIEVVPQTMDKIKALGFKYSTIS 721 (1284)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89988655764334588753872698337888520650454642299999999998389999999999999999999756
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98613212326836999999999789999998864897667888788642346589999999999876115654322224
Q gi|254780142|r 636 GISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKK 715 (1398)
Q Consensus 636 GfSigi~D~~~~~~k~~~i~~a~~~~~~~~~~~~~G~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1398)
T Consensus 722 g~sigi~Di~~~~~k~~~i~~a~~~v~~~~~~~~~g~lt~~e~~~~v~~~l~~~~~~v~~~~~~~~~~--------~~~~ 793 (1284)
T PRK00566 722 ATTISAFDIPSYDNKQEYFKETDELVAKLKEFYLKGLLTDDERYTKVVQAWSQVKDKVSHDIEKLINS--------PEYK 793 (1284)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCC
T ss_conf 87511134567257899999999999999999864688530789999999999999999999998730--------3256
Q ss_pred CCCEEEEECCCCCCCHHHEEEEEEECCCCCCCCC-----------CCCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHCCC
Q ss_conf 6883764225555784241120010000246443-----------44456663011108889897640576103221012
Q gi|254780142|r 716 MNSIFMMSHSGARGSIHQMRQLGGMRGLIAKPSG-----------EIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVV 784 (1398)
Q Consensus 716 ~N~~~~M~~SGAKGS~~qi~ql~Gqq~l~gkp~G-----------~~~~~PV~~sF~~GL~p~EfFfhamgGReGLiDTA 784 (1398)
T Consensus 794 ~N~~~iM~~SGAKGS~~NisQm~G~~G~~~~~~~~~~~~~~~~~~~~~e~pV~nsF~~GLtP~EfFFHaMgGREGLIDTA 873 (1284)
T PRK00566 794 DNSIVIMADSGARGNISNFTQLFGMRGLMSKSYNYDQKNNSKVIKDTIEVPIKHSFIEGLTVSEYFNSSYGARKGMTDTA 873 (1284)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHCCCCCCCCHHHCC
T ss_conf 77368986167766899999987423651467787667777766665550000110249973664220654233014410
Q ss_pred CCCCCCCEEEEHHHHHHCCCEEEEECCCCCCCCEEEEEEEC--CEEEEEECCCCCCCCCHHHCCCCCCCCEEEECCCCCC
Q ss_conf 10156740110154230143277513887666512111008--8488650001012211442017789718851786578
Q gi|254780142|r 785 MRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDS--GQVVYSLGSRVLGRTALDDIINPLTNECIVKAGQLIL 862 (1398)
Q Consensus 785 vKTA~SGYlqRrLvk~~eDl~V~~~D~~t~~g~~~~~~~~~--~~~~~~l~~~~~~r~~~~di~~~~~~~~i~~~~~~i~ 862 (1398)
T Consensus 874 VKTAeSGYlQRRLVKalEDl~V~ydd~~t~~g~~v~~~~~~~d~~~ie~l~~~~~~r~~~~~i~~~~~~~~~~~~~~~i~ 953 (1284)
T PRK00566 874 MKTAKSGYMTRKLVDATQEVIINDDDCGTKKGIIVEEIRNTKDNSSIESLKDRIVNRYSINPIYDPKTKKLIVEADKLIT 953 (1284)
T ss_pred HHCCCCCCCHHHHHHHHCCEEEEECCCCCCCCEEEEEEEECCCCCEEEEHHHHHHCCEEHHHHCCCCCCEEEECCCCCCC
T ss_conf 22000146287888764647987314777788189998866997520123544415052445168566706520454002
Q ss_pred HHHHHHHHHCCCCEEECCCCCCHHHHHCCCHHHHHHHCCCCCEECHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999759840202331000355186578875420178520001014602111100788987764202454322211
Q gi|254780142|r 863 ESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMD 942 (1398)
Q Consensus 863 ~~~~~~i~~~~i~~v~irs~lt~~~~~~v~~~cy~~~l~~~~lv~pGe~VG~iAAQSIGEP~TQmTLnTFHfAGVAS~~~ 942 (1398)
T Consensus 954 ~~~~~~i~~~~i~~~~irs~l~~~~~~~~~~kc~g~dl~~~~lvepGEaVG~IAAQSIGEPgTQMTLnTFH~AGVas~-- 1031 (1284)
T PRK00566 954 SELANQIQNSGIREVEVRSPLHCESENGVCQKCFGLDLSTNKLVETGTAIGVIAAQSIGEPGTQLTMRTFHTGGVAGE-- 1031 (1284)
T ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCC--
T ss_conf 999999998199789853731342154199998566556078677777210000023688622032766543433566--
Q ss_pred CCEEEECCCCEEEEEEEEEEECCCCCEEEEECCCCEEEEECCCCEEEEEECCCHHCCCCCCCCEEECCEEEEECCCCCCE
Q ss_conf 22024014876897211346517887789742760466406776000000110000135678553225078621354311
Q gi|254780142|r 943 RSFIESPCDGIVKIKNRNVCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTFP 1022 (1398)
Q Consensus 943 ~~~iknvTlGVPRlkEi~~~~n~~~~~i~vs~~~~~~i~d~~~~~~~~~ki~~~~~~~v~~~~~v~~~~ii~~~Dp~~~~ 1022 (1398)
T Consensus 1032 ----~NVTlGvPRlkEIin~~~pk~~---------------------------------------------------~~~ 1056 (1284)
T PRK00566 1032 ----TNITQGFERLKQLFDVIQPKEN---------------------------------------------------EKA 1056 (1284)
T ss_pred ----CCCCCCCHHHHHHHHHCCCCCC---------------------------------------------------CCE
T ss_conf ----7624675357988872488986---------------------------------------------------644
Q ss_pred EEECCCCEEEEEEECCCCEEHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCEEEECCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 32024636897531278320012302368602677510110122123853477427782532247884202137784454
Q gi|254780142|r 1023 IITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKSARGTDARWFLPVDALLS 1102 (1398)
Q Consensus 1023 i~~e~~~~v~~~~~~~~~~~~~~~~~~t~~~~~~~i~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 1102 (1398)
T Consensus 1057 ~i~~v~g~------------------------------------------------------------------------ 1064 (1284)
T PRK00566 1057 VISEVKGT------------------------------------------------------------------------ 1064 (1284)
T ss_pred EEEECCEE------------------------------------------------------------------------
T ss_conf 66752729------------------------------------------------------------------------
Q ss_pred ECCCCCCCCCCEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCEEEEEEECCC-CEEEEEEECCCCCCEE
Q ss_conf 136761354842221013202455433677328898875251111011134786786331279-4499998368984026
Q gi|254780142|r 1103 VSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKN-KSRVVIEPFEDGVEPA 1181 (1398)
Q Consensus 1103 v~~~~~v~~~d~l~~~~~~~~k~~DIt~GLPrV~eLFEar~pk~~aiisei~Giv~i~~~~~~-k~~~vi~~~~~g~~~~ 1181 (1398)
T Consensus 1065 ------------------------------------------------------i~~i~~~~~~~~~~~v~-~~~~~~~~ 1089 (1284)
T PRK00566 1065 ------------------------------------------------------VESITKDSNANGYNVVI-IKNKDNEV 1089 (1284)
T ss_pred ------------------------------------------------------EEEEEECCCCCCEEEEE-ECCCCCEE
T ss_conf ------------------------------------------------------99999705887248999-56997179
Q ss_pred EEEECCCCEEEEECCCEEECCCEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHCCEEEE
Q ss_conf 89813896589841987740864643899999998752799999999999999999809700612560124762861489
Q gi|254780142|r 1182 EYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEI 1261 (1398)
Q Consensus 1182 e~~ip~~~~l~v~dgd~V~~gd~lt~Gsid~~eIl~vlGIEAAR~~Ii~EIq~V~~~~Gi~IN~RHIeLIaD~MT~kg~I 1261 (1398)
T Consensus 1090 ~~~i~~~~~l~v~~~d~v~~g~~lt~g~i~~~~ll~v~Gi~~~~~~~i~evq~Vy~~qGv~i~dk~ievi~rqm~~~~~i 1169 (1284)
T PRK00566 1090 NYPTPFNAVLRVKTGDEVIPGSKITEGSIDVKDLLKVAGIENVRQYIIKEVQKVYRMQGIEIADKYIEVIIRQLTNKLQI 1169 (1284)
T ss_pred EEECCCCCEEEECCCCEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEECCEEEHHHHHHCCEEEE
T ss_conf 99746787788636998946986458999989987556999999999999999988448656256635267664246599
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCEECCCC
Q ss_conf 41886454566410699999999999972898752012100001453023107765040258999999745285523665
Q gi|254780142|r 1262 TDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDG 1341 (1398)
Q Consensus 1262 ~~~Gdt~~i~g~~Inr~~~~~~Nr~~~~~g~~pa~~~p~llGITKasl~t~S~Ls~ASFEeT~~vL~eAAi~ge~D~L~G 1341 (1398)
T Consensus 1170 ~~~gd~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~GIt~~~~~~~S~L~~ASFeeT~~vL~dAA~~g~~D~l~G 1249 (1284)
T PRK00566 1170 TDPGDSGLFVGQTISINEFTEVNQSMLLNKKKPPSAINQVFGLDEAPSKSGSFLSAASFQDTKKILTDAAVKSQKDYLIG 1249 (1284)
T ss_pred EECCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCEEECHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 95798664575375399999999999977998823221103623033554329998311316689999998479885778
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 32215507305655354665331210251
Q gi|254780142|r 1342 FKENVIVGRSIPAGTGAILHEKRRVAMNR 1370 (1398)
Q Consensus 1342 vSENIIlGqliP~GTG~f~~~~~~~~~~~ 1370 (1398)
T Consensus 1250 vsEnII~G~~iP~GTG~~~~~~~~~~~~~ 1278 (1284)
T PRK00566 1250 LKENVILGNLIPAGTGFKDVEEVIAYGEE 1278 (1284)
T ss_pred CCHHHCCCCCCCCCCCCCHHHEEEECCHH
T ss_conf 00353038976877687413216864587