BLAST/PSIBLAST alignment of GI: 254780142 and GI: 241204158 at iteration 1
>gi|241204158|ref|YP_002975254.1| DNA-directed RNA polymerase subunit beta' [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1402
>gi|240858048|gb|ACS55715.1| DNA-directed RNA polymerase, beta' subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1402
Score = 2097 bits (5434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 988/1378 (71%), Positives = 1180/1378 (85%)
Query: 1 MQQEVMRFFNPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCA 60
M QEVM FNP + FDS+RISIASP KI S SYGEIKKPETINYRTFKPERDGLFCA
Sbjct: 1 MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA 60
Query: 61 RIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKS 120
RIFGPIKDYEC+CGKYKRMKYKGIICEKCGVEVTLS VRR+RM HI+LA+PVAH WFLKS
Sbjct: 61 RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS 120
Query: 121 LPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIA 180
LPSRISTLL M+L+DVERVLYFE+Y+V +PGL++L+++Q+L+EEEY+ AV ++G+DQF A
Sbjct: 121 LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA 180
Query: 181 MMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMI 240
M+GA+AIYE+L +++L+ +A LR +L+ ++S ++KK++KRLKIV++F+ SGN P WMI
Sbjct: 181 MIGAEAIYEMLASMNLEKIAGDLRAELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI 240
Query: 241 IRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRM 300
++ +PV+PPDLRPLV LD GRFA SDLNDLYRRVI RNNRL RL L AP IIIRNEKRM
Sbjct: 241 MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM 300
Query: 301 LQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAG 360
LQESVDALFDNGR RV+TGAN+RPLKSLSDMLKGKQGRFR NLLGKRVDYSGRSVIV G
Sbjct: 301 LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG 360
Query: 361 PELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQ 420
PEL+LHQCGLPK MALELFKPF+YA+L+ KGY STVKQAKK VEKE+PEVWD+L EV+ +
Sbjct: 361 PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE 420
Query: 421 HVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQL 480
H VLLNRAP+LHRL +QAFEP ++ GKAIQLHPLVC +NADFDGDQMAV+ +S EAQL
Sbjct: 421 HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL 480
Query: 481 EARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALE 540
EARVLM+STNN+LHPA+GAP+ VPSQDMVLGL YLS +++ +PGEGM F+D+GE++HALE
Sbjct: 481 EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE 540
Query: 541 NKIVTLHSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKN 600
+K+VTLH+KIRGR+KSVD+DG SKIY+TTPGR++IGE+LP++ ++ FDICNQEM KKN
Sbjct: 541 SKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN 600
Query: 601 ISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKM 660
IS M+DT+YRHCGQK TV FCD +M+LGF +AC +GISFGKDD+++P++K KI+A+ + +
Sbjct: 601 ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDAKAKIVADTENL 660
Query: 661 VKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIF 720
VKEYE QYNDGLIT+GEKYNKVVD WGK T+KV EEMMARIK VEFD +TGRQK MNSI+
Sbjct: 661 VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDEKTGRQKPMNSIY 720
Query: 721 MMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGL 780
MMSHSGARGS +QMRQLGGMRGL+AKPSGEIIE+PI S+FK GL E+F S G RKGL
Sbjct: 721 MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL 780
Query: 781 LDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRT 840
D ++TA+SGYL+RRLVDVAQ+C+V VDC T+ GLT+T IVD+GQVV S+G R+LGRT
Sbjct: 781 ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTQTGLTMTAIVDAGQVVASIGVRILGRT 840
Query: 841 ALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDL 900
ALDDI +P+T E IV AG++ILE V EIEK GI+S+RIRSALTCE GVC +CYGRDL
Sbjct: 841 ALDDIDHPVTGERIVDAGRMILEPDVVEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL 900
Query: 901 ARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRN 960
ARG+ VN+GEAVGVIAAQSIGEPGTQLTMRTFHLGG TV+D+SF+E+ +G V+IKNRN
Sbjct: 901 ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN 960
Query: 961 VCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHT 1020
+ RNS +L++MGRN T+QILD G E+ S R+ YG+KL VD+G ++ GQR++EWDP+T
Sbjct: 961 ILRNSDGNLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT 1020
Query: 1021 FPIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENG 1080
P++TEV+GTV FEDLVDG+SV+E+ ESTGI KR+VIDWR R +LKPAIV+ D +G
Sbjct: 1021 RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG 1080
Query: 1081 VVLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFE 1140
+ K +RG DAR+FL VDA+LSV PG KVS GDVLAR P+ SAKTKDIT GLPRVAELFE
Sbjct: 1081 NIAKLSRGGDARFFLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE 1140
Query: 1141 ARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVE 1200
ARRPK+HAI+AEI GTIR+ R+YKNK RV+IEP EDGVEP EY IPK K F+LQ+GD++E
Sbjct: 1141 ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE 1200
Query: 1201 KGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVE 1260
KGDYILDGNP P DIL IKGVEALASYL+NE+QEVYRL+GV IN KHIEV+VR MLQKVE
Sbjct: 1201 KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE 1260
Query: 1261 ITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASF 1320
ITD D+ YI+GDNVDRIE+E++N L +QGKK P+L GITKASLQT SFISAASF
Sbjct: 1261 ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPAYGDPVLLGITKASLQTPSFISAASF 1320
Query: 1321 QETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRVAMNRDQMILKER 1378
QETTKVLTEAAIAGK D L G KENVIVGR IPAGTG + + RR+A +RD+MIL+ER
Sbjct: 1321 QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDEMILEER 1378