gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution Length = 1733
>gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution Length = 1733
>gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex Length = 1733
>gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With The Inhibitor Alpha Amanitin Length = 1733

Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 293/1557 (18%), Positives = 532/1557 (34%), Gaps = 266/1557 (17%) Query: 10 NPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDY 69 R V+ + SP ++ ++S +I+ PET++ + + GL R+ ++ Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRN- 64 Query: 70 ECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFL---KSLPSRIS 126 + C+ C + HIDLA PV H F+ K + + Sbjct: 65 --------------LKCQTCQEGMNECP---GHFGHIDLAKPVFHVGFIAKIKKVCECVC 107 Query: 127 TLLGMSLRDVERVLYFESYVVVDPG-----LSSLEKYQILTEEEYVEAVSQFGQDQFIAM 181 G L D L ++ + D + +L K +++ E + S+ Q ++ Sbjct: 108 MHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCET---DVPSEDDPTQLVSR 164 Query: 182 MGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKK---------IIKRLKIVD----S 228 G + D L + + + + + I K + + D Sbjct: 165 GGCGNTQPTIRK-DGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLG 223 Query: 229 FITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLH 288 F + P WMI+ LPV PP +RP ++ + + DL ++ N L L+ Sbjct: 224 FNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNG 283 Query: 289 APEIIIRNEKRMLQESVDALFDNGRHKRVVT-GANRRPLKSLSDMLKGKQGRFRTNLLGK 347 AP I + +LQ V DN + + RP+KS+ LKGK+GR R NL+GK Sbjct: 284 APHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGK 343 Query: 348 RVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQA-------- 399 RVD+S R+VI P L+L Q G+PK +A L P + V+ Sbjct: 344 RVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAK 403 Query: 400 ---------------KKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKII 444 K+ + + W V ++ VL NR PSLH++SM A K+I Sbjct: 404 YVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVI 463 Query: 445 SGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVP 504 +L+ V + YNADFDGD+M ++ S E + E L ++ P S P Sbjct: 464 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGI 523 Query: 505 SQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHAL-----ENKIVTLHSKIRGRYKSVDK 559 QD + G+ L+ F ++ +V + L + ++ + I+ + K Sbjct: 524 VQDTLCGIRKLTLRD--------TFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGK 575 Query: 560 DGNSISKIY---------DTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYR 610 S++ TT +L +I F + ++ + + ++ + R Sbjct: 576 QILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTR 635 Query: 611 HCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYND 670 G + ++ ++ + +G S G D I + I E K+ Sbjct: 636 EKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKK-----KV 690 Query: 671 GLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDP----ETGRQKKMNSIFMMSHSG 726 +T+ + N + G T + E+ + R D K +N++ M +G Sbjct: 691 LDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAG 750 Query: 727 ARGSI---HQMRQLGGMRGLIAKPSGEIIESP-----------------IRSHFKGGLCG 766 ++GS QM G + + K + + + GL Sbjct: 751 SKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTP 810 Query: 767 FEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSG 826 EFF +GGR+GL+D ++TA +GY+ RRLV ++ +V+ D T+ L G Sbjct: 811 QEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVH-YDNTTRNSLGNVIQFIYG 869 Query: 827 Q--------VVYSL--------------------------------GSRVLGRTALDDII 846 + SL GS +LG L ++ Sbjct: 870 EDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLL 929 Query: 847 NPLTNECIVKAGQ----------------LILESHVNEIEKCGIRSVRIRSALTCESSRG 890 + + + I N + I + + G Sbjct: 930 DEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLG 989 Query: 891 VCVLCYGRDLARG--SLVNVGEAVGVIAAQSI--GEPGTQLTMRTFHLGGAVTVMDRSFI 946 V L + RG ++ + V + T+ ++ + L S I Sbjct: 990 VKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNI 1049 Query: 947 ESPCDGIV----KIKNRNVCRNSTNDLISMGRNTTL-----------------QILDMSG 985 E+ V ++ ++ M NT +IL+++ Sbjct: 1050 EAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAK 1109 Query: 986 QEQYSHRIMYGAKLFVDDGGV-------IECGQRISEWDPHTFPIITEVSGTVGFEDLVD 1038 + +Y D IE S + TV ED Sbjct: 1110 NMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEI 1169 Query: 1039 GISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKSARGTDARWFLPVD 1098 + E + D + + + D++ + + + + Sbjct: 1170 IQLHFSLLDEEAEQS----FDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLF 1225 Query: 1099 ALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPKNHAILAEIS--GT 1156 + S +K+ + R A+T+ E ++ +N +L I+ G Sbjct: 1226 VIWSEDNDEKLIIRCRVVRPKSLDAETE--------AEEDHMLKKIEN-TMLENITLRGV 1276 Query: 1157 IRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDIL 1216 I+R K + ++ + L + V D DI+ Sbjct: 1277 ENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIM 1336 Query: 1217 RIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILGDNVD 1276 + G+EA + L EV V +G +N++H+ ++V M + +T + + Sbjct: 1337 EVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTS------VTRHGFN 1390 Query: 1277 RIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAIAGKV 1336 R L R SF+ET ++L EA + ++ Sbjct: 1391 RSNTGALMR--------------------------------CSFEETVEILFEAGASAEL 1418 Query: 1337 DTLDGFKENVIVGRSIPAGTGAILHEKRRVAMNRDQMIL-KERSNFSQNEDLKNTAI 1392 D G ENVI+G+ P GTGA V ++ + ++ ++ ED ++ + Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAF-----DVMIDEESLVKYMPEQKITEIEDGQDGGV 1470

PSIBLAST alignment of GI: 254780142 and protein with PDB id: 1i3q