PSIBLAST alignment of GI: 254780142 and protein with PDB id: 1iw7
gi|21730340|pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1524
>gi|21730346|pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1524
Score = 353 bits (906), Expect = 1e-94, Method: Composition-based stats.
Identities = 120/270 (44%), Positives = 170/270 (62%), Gaps = 4/270 (1%)
Query: 1122 SAKTKDITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPA 1181
A DIT GLPRV ELFEARRPK A+++EI G +RI+ + ++ + +G
Sbjct: 1246 VAGAADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEET---EEKLSVFVESEGF-SK 1301
Query: 1182 EYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGV 1241
EY +PK ++DGD+VE G + G P +L KG EA+ YL+ E+Q+VYR +GV
Sbjct: 1302 EYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGV 1361
Query: 1242 AINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPIL 1301
++ KHIE+VVR M++ VE+TDP D+ + G +++ +VE LN L +GK V++ P+L
Sbjct: 1362 KLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLL 1421
Query: 1302 QGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILH 1361
G+TK++L TKS++SAASFQ TT VLTEAAIAGK D L G KENVI+GR IPAGTG+
Sbjct: 1422 MGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFV 1481
Query: 1362 EKRRVAMNRDQMILKERSNFSQNEDLKNTA 1391
+V + ++E + + A
Sbjct: 1482 RFTQVVDQKTLKAIEEARKEAVEAKERPAA 1511