PSIBLAST alignment of GI: 254780142 and protein with PDB id: 1iw7

gi|21730340|pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1524
>gi|21730346|pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1524
 Score =  353 bits (906), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 120/270 (44%), Positives = 170/270 (62%), Gaps = 4/270 (1%)

Query: 1122 SAKTKDITSGLPRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPA 1181
             A   DIT GLPRV ELFEARRPK  A+++EI G +RI+     + ++ +    +G    
Sbjct: 1246 VAGAADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEET---EEKLSVFVESEGF-SK 1301

Query: 1182 EYFIPKNKHFYLQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGV 1241
            EY +PK     ++DGD+VE G  +  G   P  +L  KG EA+  YL+ E+Q+VYR +GV
Sbjct: 1302 EYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGV 1361

Query: 1242 AINHKHIEVVVRHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPIL 1301
             ++ KHIE+VVR M++ VE+TDP D+  + G  +++ +VE LN  L  +GK  V++ P+L
Sbjct: 1362 KLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLL 1421

Query: 1302 QGITKASLQTKSFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILH 1361
             G+TK++L TKS++SAASFQ TT VLTEAAIAGK D L G KENVI+GR IPAGTG+   
Sbjct: 1422 MGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFV 1481

Query: 1362 EKRRVAMNRDQMILKERSNFSQNEDLKNTA 1391
               +V   +    ++E    +     +  A
Sbjct: 1482 RFTQVVDQKTLKAIEEARKEAVEAKERPAA 1511