PSIBLAST alignment of GI: 254780142 and protein with PDB id: 1l9u
gi|21466006|pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1524
>gi|21466012|pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1524
Score = 309 bits (792), Expect = 2e-81, Method: Composition-based stats.
Identities = 111/254 (43%), Positives = 149/254 (58%), Gaps = 35/254 (13%)
Query: 16 RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGK 75
+ VRI++ASP KI S SYGE++KPETINYRT KPERDGLF RIFGPIKDYEC CGK
Sbjct: 3 KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGK 62
Query: 76 YKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRD 135
YKR +++G +CE+CGVEVT S VRR RM HI+LA+P AH WF+K +PS+I TLL +S +
Sbjct: 63 YKRQRFEGKVCERCGVEVTRSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATE 122
Query: 136 VERVLYFESYVVVDPGLSSL-----EKYQILTEEEYVE----------------AVSQFG 174
+E+VLYF Y+V+DP + L EK Q+LT+EEY E A+ + G
Sbjct: 123 LEQVLYFNKYIVLDPKGAVLDGVPVEKRQLLTDEEYRELRYGKQETYPLPAGVDALVKDG 182
Query: 175 QD---------QFIAMMGADAIYELLIALD---LQNLALTLRDQLSK--SSSIFRRKKII 220
++ ++ M A+Y + L+ LR LS +R +++
Sbjct: 183 EEVVKGQELAPGVVSRMDGVALYRFPRRVRVDYLRKERAALRIPLSAWVEKEAYRPGEVL 242
Query: 221 KRLKIVDSFITSGN 234
L F +
Sbjct: 243 AELSEPYLFRAEES 256