PSIBLAST alignment of GI: 254780142 and protein with PDB id: 2pmz
gi|167744882|pdb|2PMZ|C Chain C, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 392
>gi|167744893|pdb|2PMZ|G Chain G, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 392
Score = 165 bits (418), Expect = 4e-38, Method: Composition-based stats.
Identities = 83/521 (15%), Positives = 163/521 (31%), Gaps = 132/521 (25%)
Query: 846 INPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSL 905
I+ + + + +I + + + ++ + G L
Sbjct: 2 IDEKDKPYLEEKVKQASNILPQKIVDDLKNLILNKEIIVTRDEIDKIFDLAIKEYSEG-L 60
Query: 906 VNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRNVCRNS 965
+ GEA+G++AAQS+GEPGTQ+T+RTFH G + + G+ ++ +
Sbjct: 61 IAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIREL-------NVTLGLPRLIEIVDAKKV 113
Query: 966 TNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTFPIIT 1025
+ + T+ + D +++ + + V+ D + II
Sbjct: 114 PSTPMM-----TIYLTDEYKRDRDKALEVARKLEYTKIENVVSSTSI----DIASMSII- 163
Query: 1026 EVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKS 1085
++ LK V D+ +
Sbjct: 164 ------------------------------------LQLDNEMLKDKGVTVDDVKKAIGR 187
Query: 1086 ARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPK 1145
+ D D+ L+++ + +A LF+ R
Sbjct: 188 LKLGDFMIEESEDSTLNINFAN------------------------IDSIAALFKLRDKI 223
Query: 1146 NHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYI 1205
+ + I G R K +++ DG + K +
Sbjct: 224 LNTKIKGIKGIKRAIVQKKGDEYIIL---TDGSNLSGVLSVKGVDVAKVE---------- 270
Query: 1206 LDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPA 1265
++I + G+EA +I E+ +V +G+ ++ +HI ++ M + +
Sbjct: 271 ---TNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIG 327
Query: 1266 DTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTK 1325
V E N S ++ A+F+ T K
Sbjct: 328 ------RHGV----TGEKN----------------------------SVLARAAFEVTVK 349
Query: 1326 VLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRV 1366
L +AA G V+ G EN+I+G I GTG + R +
Sbjct: 350 HLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPI 390