PSIBLAST alignment of GI: 254780142 and protein with PDB id: 2y0s
>gi|323462790|pdb|2Y0S|C Chain C, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In P21 Space Group Length = 395
>gi|323462812|pdb|2Y0S|Y Chain Y, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In P21 Space Group Length = 395
Score = 169 bits (427), Expect = 4e-39, Method: Composition-based stats.
Identities = 88/525 (16%), Positives = 169/525 (32%), Gaps = 132/525 (25%)
Query: 842 LDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLA 901
++++I+ + + + +I + + + L ++ +
Sbjct: 1 MENVIDEKDKSYLEEKVKQASNILPQKIVEDLKNLISNKEVLVTRDEIDKIFDLAIKEYS 60
Query: 902 RGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRNV 961
G L+ GEA+G++AAQS+GEPGTQ+T+RTFH G +
Sbjct: 61 EG-LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELN-------------------- 99
Query: 962 CRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTF 1021
+++G ++I+D +Y + D
Sbjct: 100 --------VTLGLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEK--------------- 136
Query: 1022 PIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGV 1081
EV+ + + + + +S IA +I ++ LK V D+
Sbjct: 137 --ALEVARKLEYTKIENVVSSTS-----IDIASMSII---LQLDNEMLKDKGVTVDDVKK 186
Query: 1082 VLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEA 1141
+ + + L++S + +A LF+
Sbjct: 187 AINRLKLGEFVIDESEGNTLNISFAN------------------------IDSIAALFKL 222
Query: 1142 RRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEK 1201
R + + I G R K +++ DG + K +
Sbjct: 223 RDKILNTKIKGIKGIKRAIVQKKGDEYIIL---TDGSNLSGVLSVKGVDIAKVE------ 273
Query: 1202 GDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEI 1261
++I + G+EA +I E+ +V +G+ ++ +HI +V M + +
Sbjct: 274 -------TNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVV 326
Query: 1262 TDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQ 1321
V E N S ++ A+F+
Sbjct: 327 RQIG------RHGV----TGEKN----------------------------SVLARAAFE 348
Query: 1322 ETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRV 1366
T K L +AA G V+ G EN+I+G I GTG + R +
Sbjct: 349 VTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPI 393