PSIBLAST alignment of GI: 254780142 and protein with PDB id: 2y0s

>gi|323462790|pdb|2Y0S|C Chain C, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In P21 Space Group Length = 395
>gi|323462812|pdb|2Y0S|Y Chain Y, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In P21 Space Group Length = 395
 Score =  169 bits (427), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 88/525 (16%), Positives = 169/525 (32%), Gaps = 132/525 (25%)

Query: 842  LDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLA 901
            ++++I+      + +  +        +I +     +  +  L              ++ +
Sbjct: 1    MENVIDEKDKSYLEEKVKQASNILPQKIVEDLKNLISNKEVLVTRDEIDKIFDLAIKEYS 60

Query: 902  RGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRNV 961
             G L+  GEA+G++AAQS+GEPGTQ+T+RTFH  G   +                     
Sbjct: 61   EG-LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELN-------------------- 99

Query: 962  CRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTF 1021
                    +++G    ++I+D           +Y    +  D                  
Sbjct: 100  --------VTLGLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEK--------------- 136

Query: 1022 PIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGV 1081
                EV+  + +  + + +S          IA   +I       ++ LK   V  D+   
Sbjct: 137  --ALEVARKLEYTKIENVVSSTS-----IDIASMSII---LQLDNEMLKDKGVTVDDVKK 186

Query: 1082 VLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEA 1141
             +   +  +          L++S                           +  +A LF+ 
Sbjct: 187  AINRLKLGEFVIDESEGNTLNISFAN------------------------IDSIAALFKL 222

Query: 1142 RRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEK 1201
            R    +  +  I G  R     K    +++    DG   +     K       +      
Sbjct: 223  RDKILNTKIKGIKGIKRAIVQKKGDEYIIL---TDGSNLSGVLSVKGVDIAKVE------ 273

Query: 1202 GDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEI 1261
                       ++I  + G+EA    +I E+ +V   +G+ ++ +HI +V   M +   +
Sbjct: 274  -------TNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVV 326

Query: 1262 TDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQ 1321
                         V      E N                            S ++ A+F+
Sbjct: 327  RQIG------RHGV----TGEKN----------------------------SVLARAAFE 348

Query: 1322 ETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRV 1366
             T K L +AA  G V+   G  EN+I+G  I  GTG +    R +
Sbjct: 349  VTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPI 393