PSIBLAST alignment of GI: 254780142 and protein with PDB id: 3hkz
gi|239782144|pdb|3HKZ|C Chain C, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 395
>gi|239782157|pdb|3HKZ|M Chain M, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 395
Score = 165 bits (418), Expect = 5e-38, Method: Composition-based stats.
Identities = 83/521 (15%), Positives = 163/521 (31%), Gaps = 132/521 (25%)
Query: 846 INPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSL 905
I+ + + + +I + + + ++ + G L
Sbjct: 5 IDEKDKPYLEEKVKQASNILPQKIVDDLKNLILNKEIIVTRDEIDKIFDLAIKEYSEG-L 63
Query: 906 VNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRNVCRNS 965
+ GEA+G++AAQS+GEPGTQ+T+RTFH G + + G+ ++ +
Sbjct: 64 IAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIREL-------NVTLGLPRLIEIVDAKKV 116
Query: 966 TNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTFPIIT 1025
+ + T+ + D +++ + + V+ D + II
Sbjct: 117 PSTPMM-----TIYLTDEYKRDRDKALEVARKLEYTKIENVVSSTSI----DIASMSII- 166
Query: 1026 EVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKS 1085
++ LK V D+ +
Sbjct: 167 ------------------------------------LQLDNEMLKDKGVTVDDVKKAIGR 190
Query: 1086 ARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPK 1145
+ D D+ L+++ + +A LF+ R
Sbjct: 191 LKLGDFMIEESEDSTLNINFAN------------------------IDSIAALFKLRDKI 226
Query: 1146 NHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYI 1205
+ + I G R K +++ DG + K +
Sbjct: 227 LNTKIKGIKGIKRAIVQKKGDEYIIL---TDGSNLSGVLSVKGVDVAKVE---------- 273
Query: 1206 LDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPA 1265
++I + G+EA +I E+ +V +G+ ++ +HI ++ M + +
Sbjct: 274 ---TNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIG 330
Query: 1266 DTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTK 1325
V E N S ++ A+F+ T K
Sbjct: 331 ------RHGV----TGEKN----------------------------SVLARAAFEVTVK 352
Query: 1326 VLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRV 1366
L +AA G V+ G EN+I+G I GTG + R +
Sbjct: 353 HLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPI 393