PSIBLAST alignment of GI: 254780142 and protein with PDB id: 3hkz

gi|239782144|pdb|3HKZ|C Chain C, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 395
>gi|239782157|pdb|3HKZ|M Chain M, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 395
 Score =  165 bits (418), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/521 (15%), Positives = 163/521 (31%), Gaps = 132/521 (25%)

Query: 846  INPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSL 905
            I+      + +  +        +I       +  +  +              ++ + G L
Sbjct: 5    IDEKDKPYLEEKVKQASNILPQKIVDDLKNLILNKEIIVTRDEIDKIFDLAIKEYSEG-L 63

Query: 906  VNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRNVCRNS 965
            +  GEA+G++AAQS+GEPGTQ+T+RTFH  G   +       +   G+ ++      +  
Sbjct: 64   IAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIREL-------NVTLGLPRLIEIVDAKKV 116

Query: 966  TNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTFPIIT 1025
             +  +      T+ + D   +++     +     +     V+         D  +  II 
Sbjct: 117  PSTPMM-----TIYLTDEYKRDRDKALEVARKLEYTKIENVVSSTSI----DIASMSII- 166

Query: 1026 EVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKS 1085
                                                    ++ LK   V  D+    +  
Sbjct: 167  ------------------------------------LQLDNEMLKDKGVTVDDVKKAIGR 190

Query: 1086 ARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPK 1145
             +  D       D+ L+++                           +  +A LF+ R   
Sbjct: 191  LKLGDFMIEESEDSTLNINFAN------------------------IDSIAALFKLRDKI 226

Query: 1146 NHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYI 1205
             +  +  I G  R     K    +++    DG   +     K       +          
Sbjct: 227  LNTKIKGIKGIKRAIVQKKGDEYIIL---TDGSNLSGVLSVKGVDVAKVE---------- 273

Query: 1206 LDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPA 1265
                   ++I  + G+EA    +I E+ +V   +G+ ++ +HI ++   M +   +    
Sbjct: 274  ---TNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIG 330

Query: 1266 DTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTK 1325
                     V      E N                            S ++ A+F+ T K
Sbjct: 331  ------RHGV----TGEKN----------------------------SVLARAAFEVTVK 352

Query: 1326 VLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRV 1366
             L +AA  G V+   G  EN+I+G  I  GTG +    R +
Sbjct: 353  HLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPI 393