PSIBLAST alignment of GI: 254780142 and protein with PDB id: 3iyd

>gi|266618718|pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact Activator- Dependent Transcription Initiation Complex Length = 1413
 Score = 1727 bits (4473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 743/1372 (54%), Positives = 982/1372 (71%), Gaps = 14/1372 (1%)

Query: 3    QEVMRFFNPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARI 62
            +++++F    T    FD+++I++ASP  I S S+GE+KKPETINYRTFKPERDGLFCARI
Sbjct: 2    KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61

Query: 63   FGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLP 122
            FGP+KDYEC+CGKYKR+K++G+ICEKCGVEVT + VRR+RM HI+LASP AH WFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121

Query: 123  SRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMM 182
            SRI  LL M LRD+ERVLYFESYVV++ G+++LE+ QILTEE+Y++A+ +FG D+F A M
Sbjct: 122  SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKM 180

Query: 183  GADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIR 242
            GA+AI  LL ++DL+     LR++L++++S  +RKK+ KR+K++++F+ SGN P WMI+ 
Sbjct: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 243  KLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQ 302
             LPVLPPDLRPLV LD GRFA SDLNDLYRRVI RNNRL RL  L AP+II+RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 303  ESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPE 362
            E+VDAL DNGR  R +TG+N+RPLKSL+DM+KGKQGRFR NLLGKRVDYSGRSVI  GP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 363  LQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHV 422
            L+LHQCGLPK MALELFKPF+Y +LE +G  +T+K AKK VE+E   VWD+L EV+ +H 
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 423  VLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEA 482
            VLLNRAP+LHRL +QAFEP +I GKAIQLHPLVCA YNADFDGDQMAV+  ++ EAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 483  RVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENK 542
            R LM+STNN+L PA+G P+ VPSQD+VLGL Y++       GEGM+     E      + 
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540

Query: 543  IVTLHSKIRGRYKSVDKDGNS----ISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIK 598
            + +LH++++ R    +KD N      + + DTT GR I+  I+P+   + + I NQ + K
Sbjct: 541  LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG--LPYSIVNQALGK 598

Query: 599  KNISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEAD 658
            K IS M++T YR  G K TV F D +M  GF YA  SG S G DD+++PE K +II+EA+
Sbjct: 599  KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658

Query: 659  KMVKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRV---EFDPETGRQKK 715
              V E + Q+  GL+T GE+YNKV+D+W    D+V++ MM  ++       D +  +Q  
Sbjct: 659  AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718

Query: 716  MNSIFMMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVG 775
             NSI+MM+ SGARGS  Q+RQL GMRGL+AKP G IIE+PI ++F+ GL   ++F S  G
Sbjct: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778

Query: 776  GRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSR 835
             RKGL D  ++TA+SGYL+RRLVDVAQ+ VV + DC T +G+ +T +++ G V   L  R
Sbjct: 779  ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838

Query: 836  VLGRTALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLC 895
            VLGR   +D++ P T + +V    L+ E   + +E+  + +V++RS ++C++  GVC  C
Sbjct: 839  VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHC 898

Query: 896  YGRDLARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGG-AVTVMDRSFIESPCDGIV 954
            YGRDLARG ++N GEA+GVIAAQSIGEPGTQLTMRTFH+GG A      S I+    G +
Sbjct: 899  YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSI 958

Query: 955  KIKNRNVCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRIS 1014
            K+ N     NS+  L+   RNT L+++D  G+ + S+++ YGA L   DG  +  G+ ++
Sbjct: 959  KLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVA 1018

Query: 1015 EWDPHTFPIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDW-RFASRSQNLKPAI 1073
             WDPHT P+ITEVSG V F D++DG ++     E TG++   V+D     +  ++L+PA+
Sbjct: 1019 NWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL 1078

Query: 1074 VVTDENGV-VLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGL 1132
             + D  G  VL       A++FLP  A++ +  G ++S+GD LAR+P  S  TKDIT GL
Sbjct: 1079 KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGL 1138

Query: 1133 PRVAELFEARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFY 1192
            PRVA+LFEARRPK  AILAEISG +   +  K K R+VI P  DG +P E  IPK +   
Sbjct: 1139 PRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPV-DGSDPYEEMIPKWRQLN 1197

Query: 1193 LQDGDHVEKGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVV 1252
            + +G+ VE+GD I DG   P DILR++GV A+  Y++NEVQ+VYRL+GV IN KHIEV+V
Sbjct: 1198 VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257

Query: 1253 RHMLQKVEITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTK 1312
            R ML+K  I +   ++++ G+ V+   V+  NR L   GK   ++S  L GITKASL T+
Sbjct: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317

Query: 1313 SFISAASFQETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKR 1364
            SFISAASFQETT+VLTEAA+AGK D L G KENVIVGR IPAGTG   H+ R
Sbjct: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369