PSIBLAST alignment of GI: 254780142 and protein with PDB id: 3qqc
>gi|326634531|pdb|3QQC|A Chain A, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP CLAMP DOMAIN Length = 436
Score = 277 bits (708), Expect = 1e-71, Method: Composition-based stats.
Identities = 82/343 (23%), Positives = 128/343 (37%), Gaps = 43/343 (12%)
Query: 16 RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGK 75
+ S+ I SP +I +S E+ P+T + + P G+ R+
Sbjct: 67 KVIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGY-PIEGGVMDKRMGVID--------- 116
Query: 76 YKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRD 135
G+ CE CG HI+LA PV H F K+ I +L + R+
Sbjct: 117 ------PGLRCETCGGRAGECP---GHFGHIELARPVIHVGFAKT----IYRILESTCRE 163
Query: 136 VERVLYFESYVVVDPGLSSLEKYQILTEE---EYVEAVSQFGQDQFI--AMMGADAIYEL 190
R+ + D + K L E+ E + + + A
Sbjct: 164 CGRI------KLTDEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYP 217
Query: 191 LI--------ALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIR 242
+ + R +L + +KI + + + P WM++
Sbjct: 218 IKFEKPTIYWEIRKDEQGNEYRHRLMPTEVRDWLEKIPDKDLPLLGLDPEKSRPEWMVLT 277
Query: 243 KLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQ 302
LPV P RP + L+ G A DL +I NNRL + AP++II + +LQ
Sbjct: 278 VLPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQ 337
Query: 303 ESVDALFDNGRHKRVV-TGANRRPLKSLSDMLKGKQGRFRTNL 344
V +N + RPLK+L+ LKGK+GRFR NL
Sbjct: 338 YHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNL 380