RPSBLAST alignment for GI: 254780142 and conserved domain: smart00663

>gnl|CDD|128909 smart00663, RPOLA_N, RNA polymerase I subunit A N-terminus. Length = 295
 Score =  418 bits (1076), Expect = e-117
 Identities = 150/296 (50%), Positives = 186/296 (62%), Gaps = 24/296 (8%)

Query: 238 WMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNE 297
           WMI+  LPV PP LRP V+LD GRFA  DL  L R +I RNNRL RL  L APE IIRNE
Sbjct: 2   WMILTVLPVPPPCLRPSVSLDGGRFAEDDLTHLLRDIIKRNNRLKRLLELGAPEHIIRNE 61

Query: 298 KRMLQESVDALFDNG--RHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRS 355
           KR+LQE+VD LFDN      R  +G   RPLKSLS  LKGK+GRFR NLLGKRVD+S RS
Sbjct: 62  KRLLQEAVDTLFDNEGLPRARQKSG---RPLKSLSQRLKGKEGRFRQNLLGKRVDFSARS 118

Query: 356 VIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKK------------------GYVSTVK 397
           VI   P L+L++ G+PK +ALEL  P +   L                     G  + +K
Sbjct: 119 VITPDPNLKLNEVGVPKEIALELTFPEIVTPLNIDKLRKLVRNGPNGAKYIIRGKKTNLK 178

Query: 398 QAKK-FVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVC 456
            AK+  + K       V   V+   VVL NR P+LHR+S+QA   +++ GK I+L+PLVC
Sbjct: 179 LAKRSKIAKHLKIGDIVERHVIDGDVVLFNRQPTLHRMSIQAHRVRVLEGKTIRLNPLVC 238

Query: 457 AGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGL 512
           + YNADFDGD+M ++   S EA+ EAR LML  NN+L P +G P+  P QDM+LGL
Sbjct: 239 SPYNADFDGDEMNLHVPQSLEARAEARELMLVPNNILSPKNGKPIIGPIQDMLLGL 294