RPSBLAST alignment for GI: 254780142 and conserved domain: smart00663
>gnl|CDD|128909 smart00663, RPOLA_N, RNA polymerase I subunit A N-terminus. Length = 295
Score = 418 bits (1076), Expect = e-117
Identities = 150/296 (50%), Positives = 186/296 (62%), Gaps = 24/296 (8%)
Query: 238 WMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNE 297
WMI+ LPV PP LRP V+LD GRFA DL L R +I RNNRL RL L APE IIRNE
Sbjct: 2 WMILTVLPVPPPCLRPSVSLDGGRFAEDDLTHLLRDIIKRNNRLKRLLELGAPEHIIRNE 61
Query: 298 KRMLQESVDALFDNG--RHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRS 355
KR+LQE+VD LFDN R +G RPLKSLS LKGK+GRFR NLLGKRVD+S RS
Sbjct: 62 KRLLQEAVDTLFDNEGLPRARQKSG---RPLKSLSQRLKGKEGRFRQNLLGKRVDFSARS 118
Query: 356 VIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKK------------------GYVSTVK 397
VI P L+L++ G+PK +ALEL P + L G + +K
Sbjct: 119 VITPDPNLKLNEVGVPKEIALELTFPEIVTPLNIDKLRKLVRNGPNGAKYIIRGKKTNLK 178
Query: 398 QAKK-FVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVC 456
AK+ + K V V+ VVL NR P+LHR+S+QA +++ GK I+L+PLVC
Sbjct: 179 LAKRSKIAKHLKIGDIVERHVIDGDVVLFNRQPTLHRMSIQAHRVRVLEGKTIRLNPLVC 238
Query: 457 AGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGL 512
+ YNADFDGD+M ++ S EA+ EAR LML NN+L P +G P+ P QDM+LGL
Sbjct: 239 SPYNADFDGDEMNLHVPQSLEARAEARELMLVPNNILSPKNGKPIIGPIQDMLLGL 294