RPSBLAST alignment for GI: 254780142 and conserved domain: TIGR02387

>gnl|CDD|131440 TIGR02387, rpoC1_cyan, DNA-directed RNA polymerase, gamma subunit. The RNA polymerase gamma subunit, encoded by the rpoC1 gene, is found in cyanobacteria and corresponds to the N-terminal region the beta' subunit, encoded by rpoC, in other bacteria. The equivalent subunit in plastids and chloroplasts is designated beta', while the product of the rpoC2 gene is designated beta''. Length = 619
 Score =  705 bits (1820), Expect = 0.0
 Identities = 322/613 (52%), Positives = 431/613 (70%), Gaps = 50/613 (8%)

Query: 18  FDSVRISIASPAKIASLS---------YGEIKKPETINYRTFKPERDGLFCARIFGPIKD 68
           FD V+I+IASP ++              GE+ KPETINYRT KPE DGLFC +IFGP KD
Sbjct: 2   FDYVKITIASPERVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPSKD 61

Query: 69  YECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTL 128
           +EC CGKYKR++++GI+CE+CGVEVT S VRR RM +I LA+PV H W+LK +PS +S L
Sbjct: 62  WECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSYVSIL 121

Query: 129 LGMSLRDVERVLYFESYVVVDPGLSSLEKY-QILTEEEYVEAVSQ-FGQDQFI-----AM 181
           L M LRDVE+++YF +YVV++PG +   KY Q+LTE++++E   Q + +D  +       
Sbjct: 122 LDMPLRDVEQIVYFNAYVVLNPGNAKNLKYKQLLTEDQWLEIEDQIYAEDSELENEEVVG 181

Query: 182 MGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMII 241
           +GA+A+ +LL  L+L+ +A  LR++++ S    +R K+IKRL+++D+FI + + P WM++
Sbjct: 182 IGAEALKQLLADLNLEEVAEQLREEINGSKGQ-KRAKLIKRLRVIDNFIATSSRPEWMVL 240

Query: 242 RKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRML 301
             +PV+PPDLRP+V LD GRFA SDLNDLYRRVI RNNRL RL+ + APEII+RNEKRML
Sbjct: 241 DVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRML 300

Query: 302 QESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGP 361
           QE+VDAL DNGR  R V GAN RPLKSLSD+++GKQGRFR NLLGKRVDYSGRSVIV GP
Sbjct: 301 QEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 362 ELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQH 421
           +L++HQCGLPK MA+ELF+PF+  +L ++G V+ +K AKK +++   E+W VL EV+  H
Sbjct: 361 KLKMHQCGLPKEMAIELFQPFVIHRLIRQGIVNNIKAAKKLIQRADDEIWSVLQEVITGH 420

Query: 422 VVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLE 481
            V+LNRAP+LHRL +QAFEP ++ G+AIQLHPLVC  +NADFDGDQMAV+  +S EAQ E
Sbjct: 421 PVMLNRAPTLHRLGIQAFEPILVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQTE 480

Query: 482 ARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEG-DPGEGMLFADMGEVYHALE 540
           AR+LML++NN+L PA+G P+  PSQDMVLG  YL+ ++ G + G G  F+ + +  HA E
Sbjct: 481 ARLLMLASNNVLSPATGEPIVTPSQDMVLGCYYLTALNPGAEKGRGRYFSSLEDAIHAYE 540

Query: 541 NKIVTLHSKI--------------------------------RGRYKSVDKDGNSISKIY 568
           +  + LH  I                                  R    D+DG  IS+  
Sbjct: 541 DGRIDLHDWIWVRFNGEVETNDPLDEPIKSEDLSDGTRIEQWTYRRDRFDEDGALISQYI 600

Query: 569 DTTPGRMIIGEIL 581
            TT GR+I+   +
Sbjct: 601 LTTTGRIIMNHTI 613