RPSBLAST alignment for GI: 254780142 and conserved domain: cd02655
>gnl|CDD|132721 cd02655, RNAP_beta'_C, Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain. Bacterial RNA polymerase (RNAP) is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. This family also includes the eukaryotic plastid-encoded RNAP beta" subunit. Structure studies suggest that RNAP complexes from different organisms share a crab-claw-shape structure with two pincers defining a central cleft. Beta' and beta, the largest and the second largest subunits of bacterial RNAP, each makes up one pincer and part of the base of the cleft. The C-terminal domain includes a G loop that forms part of the floor of the downstream DNA-binding cavity. The position of the G loop may determine the switch of the bridge helix between flipped-out and normal alpha-helical conformations. Length = 204
Score = 228 bits (584), Expect = 8e-60
Identities = 92/151 (60%), Positives = 111/151 (73%), Gaps = 2/151 (1%)
Query: 1209 NPVPQDILRIK--GVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPAD 1266
P D+LRIK G EA+ YL+ E+Q+VYR +GV IN KHIE++VR M KV+I DP D
Sbjct: 53 KINPHDLLRIKFLGPEAVQKYLVEEIQKVYRSQGVNINDKHIEIIVRQMTSKVKIIDPGD 112
Query: 1267 TEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKV 1326
+ ++ G+ VD E EE N+ L GKK + P+L GITKASL T+SFISAASFQETTKV
Sbjct: 113 SGFLPGELVDLNEFEEENKRLLLLGKKPAKYEPVLLGITKASLNTESFISAASFQETTKV 172
Query: 1327 LTEAAIAGKVDTLDGFKENVIVGRSIPAGTG 1357
LTEAAI GK+D L G KENVI+GR IPAGTG
Sbjct: 173 LTEAAIEGKIDWLRGLKENVILGRLIPAGTG 203