RPSBLAST alignment for GI: 254780142 and conserved domain: cd02735
>gnl|CDD|132722 cd02735, RNAP_I_Rpa1_C, Largest subunit (Rpa1) of Eukaryotic RNA polymerase I (RNAP I), C-terminal domain. RNA polymerase I (RNAP I) is a multi-subunit protein complex responsible for the synthesis of rRNA precursor. It consists of at least 14 different subunits, and the largest one is homologous to subunit Rpb1 of yeast RNAP II and subunit beta' of bacterial RNAP. Rpa1 is also known as Rpa190 in yeast. Structure studies suggest that different RNAP complexes share a similar crab-claw-shape structure. The C-terminal domain of Rpb1, the largest subunit of RNAP II, makes up part of the foot and jaw structures of RNAP II. The similarity between this domain and the C-terminal domain of Rpb1, its counterpart in RNAP II, suggests a similar functional and structural role. Length = 309
Score = 44.1 bits (105), Expect = 3e-04
Identities = 39/212 (18%), Positives = 77/212 (36%), Gaps = 52/212 (24%)
Query: 1148 AILAEISGTIR-IKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYIL 1206
A++ EI G R + +GV A + + D ++ +
Sbjct: 145 AVIREIPGITRCFVVEEDKGGKTKYLVITEGVNLAALW---------KFSDILD--VNRI 193
Query: 1207 DGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPAD 1266
N + +L G+EA ++ E+ V+++ G+A++ +H+ ++ +M +
Sbjct: 194 YTNDI-HAMLNTYGIEAARRAIVKEISNVFKVYGIAVDPRHLSLIADYMTFE-------- 244
Query: 1267 TEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKV 1326
G NR + S SP+ + SF+ T
Sbjct: 245 -----G------GYRPFNRIGMES-----STSPLQK---------------MSFETTLAF 273
Query: 1327 LTEAAIAGKVDTLDGFKENVIVGRSIPAGTGA 1358
L +A + G +D L ++VG+ + GTG
Sbjct: 274 LKKATLNGDIDNLSSPSSRLVVGKPVNGGTGL 305