RPSBLAST alignment for GI: 254780142 and conserved domain: pfam04997

>gnl|CDD|147265 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand. Length = 330
 Score =  302 bits (776), Expect = 4e-82
 Identities = 132/351 (37%), Positives = 172/351 (49%), Gaps = 44/351 (12%)

Query: 16  RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGK 75
           +    ++  IASP +I   S GE+ KPET NY + KPE  GL   R+            K
Sbjct: 2   KKIKEIQFGIASPEEIRKWSVGEVTKPETYNYGSLKPEPGGLLDERMGT---------IK 52

Query: 76  YKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPS--RISTLLGMSL 133
            K       ICE CGVEVT          HI+LA PV H  F K + S  R    L  SL
Sbjct: 53  KKS------ICETCGVEVT---ECPGHFGHIELAKPVFHIGFFKKILSILRCVCKLCSSL 103

Query: 134 RDVERVLYFESYVVVDP-GLSSLEKYQILTEEEYVEAVSQFG---------------QDQ 177
              E V YF   VV+DP G +S ++ + +      +++                      
Sbjct: 104 LLNESVKYFFLKVVIDPKGKNSKKRLKKINNLCKKKSICSKCGEDNGGLKAFEGCGKYQP 163

Query: 178 FIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRR---KKIIKRLKIVDSFITSGN 234
            I+  GA+AI  LL  ++++     L+++L K +        KKI K  + +  F  SGN
Sbjct: 164 KISKDGAEAIKALLKNIEIE----ELKEKLRKLNPEKVLQIFKKISKEDEEILGFNPSGN 219

Query: 235 NPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIII 294
            P WMI+  LPV PP +RP V LD GRFA  DL    R +I RNNRL ++    AP  II
Sbjct: 220 RPEWMILTVLPVPPPCIRPSVQLDGGRFAEDDLTHKLRDIIKRNNRLKKMLEEGAPSHII 279

Query: 295 RNEKRMLQESVDALFDNG-RHKRVVTGANRRPLKSLSDMLKGKQGRFRTNL 344
           R EKR+LQE V  LFDN    +      + RPLKS+S  LKGK+GRFR NL
Sbjct: 280 REEKRLLQEHVATLFDNDIPGQPPALQKSGRPLKSISQRLKGKEGRFRGNL 330