RPSBLAST alignment for GI: 254780142 and conserved domain: pfam04997
>gnl|CDD|147265 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand. Length = 330
Score = 302 bits (776), Expect = 4e-82
Identities = 132/351 (37%), Positives = 172/351 (49%), Gaps = 44/351 (12%)
Query: 16 RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGK 75
+ ++ IASP +I S GE+ KPET NY + KPE GL R+ K
Sbjct: 2 KKIKEIQFGIASPEEIRKWSVGEVTKPETYNYGSLKPEPGGLLDERMGT---------IK 52
Query: 76 YKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPS--RISTLLGMSL 133
K ICE CGVEVT HI+LA PV H F K + S R L SL
Sbjct: 53 KKS------ICETCGVEVT---ECPGHFGHIELAKPVFHIGFFKKILSILRCVCKLCSSL 103
Query: 134 RDVERVLYFESYVVVDP-GLSSLEKYQILTEEEYVEAVSQFG---------------QDQ 177
E V YF VV+DP G +S ++ + + +++
Sbjct: 104 LLNESVKYFFLKVVIDPKGKNSKKRLKKINNLCKKKSICSKCGEDNGGLKAFEGCGKYQP 163
Query: 178 FIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRR---KKIIKRLKIVDSFITSGN 234
I+ GA+AI LL ++++ L+++L K + KKI K + + F SGN
Sbjct: 164 KISKDGAEAIKALLKNIEIE----ELKEKLRKLNPEKVLQIFKKISKEDEEILGFNPSGN 219
Query: 235 NPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIII 294
P WMI+ LPV PP +RP V LD GRFA DL R +I RNNRL ++ AP II
Sbjct: 220 RPEWMILTVLPVPPPCIRPSVQLDGGRFAEDDLTHKLRDIIKRNNRLKKMLEEGAPSHII 279
Query: 295 RNEKRMLQESVDALFDNG-RHKRVVTGANRRPLKSLSDMLKGKQGRFRTNL 344
R EKR+LQE V LFDN + + RPLKS+S LKGK+GRFR NL
Sbjct: 280 REEKRLLQEHVATLFDNDIPGQPPALQKSGRPLKSISQRLKGKEGRFRGNL 330