RPSBLAST alignment for GI: 254780142 and conserved domain: pfam04998

>gnl|CDD|147266 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5. RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound. Length = 447

 Score =  184 bits (469), Expect = 2e-46
 Identities = 86/309 (27%), Positives = 126/309 (40%), Gaps = 31/309 (10%)

Query: 768  EFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQ 827
            EFF   +GGR+GL+D  ++TA +GYL RRLV   ++ VV   D     G  I   +    
Sbjct: 6    EFFFHTMGGREGLIDTAVKTAETGYLQRRLVKALEDLVVQYDDTVRNSGGEIVQFLYGED 65

Query: 828  VVYSLGSRVLGRT--------ALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRI 879
             +  L     GR                 L +  ++ +   +       + + GI S R+
Sbjct: 66   GLDPLKIEGQGRFTIEDSDLKLEKKFKIDLNDVLLLLSEFSLSTLLFEILLRSGIESKRV 125

Query: 880  RSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVT 939
            RS LTC S  GVC LCYGRD  R SLV  GEAVG+IAAQSIGEPGTQ+T+ TFH  G  +
Sbjct: 126  RSELTCNSKAGVCFLCYGRDKYRRSLVEPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVAS 185

Query: 940  VMDRSFIESPCDGIVKIKN-----RNVCRNSTNDLISMGRNTTLQ---ILDMSGQEQYSH 991
                  +     G+ ++K      +N  +     L+     +                  
Sbjct: 186  ----KNVTL---GVPRLKEIINVAKNNKKPVITVLLIKNIVSDKARVKKQREEKTLLLLK 238

Query: 992  RIMYGAKLFVDDGGVIECGQRISEWDPHTFPIITEVSGTVGFEDLVDGISVIESIGESTG 1051
            ++     ++ DD       ++   W    F I          E   +    I  IG+   
Sbjct: 239  KVTIIIVIYYDDDSESTVIKKDRIWVLAYFVIPE--------EVAEEVALAIIIIGKRKS 290

Query: 1052 IAKRKVIDW 1060
              ++K    
Sbjct: 291  RKRKKNNLG 299