RPSBLAST alignment for GI: 254780142 and conserved domain: pfam05000

>gnl|CDD|147268 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4. RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel domain. The funnel contain the binding site for some elongation factors. Length = 108

 Score = 84.0 bits (208), Expect = 2e-16
 Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 21/109 (19%)

Query: 673 ITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGR-----QKKMNSIFMMSHSGA 727
           IT  E+Y K+ D+WG T ++V E ++  I     DP  G          NSI+MM+ SGA
Sbjct: 1   ITDAERYGKLEDIWGMTLEEVFEALINNILNKARDP-AGNIASKSLDLNNSIYMMADSGA 59

Query: 728 RGSIHQMRQLGGMRGLIAKPSGEI---------------IESPIRSHFK 761
           +GSI  + Q+ G RG        I               IESP    F 
Sbjct: 60  KGSIINISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDIESPESRGFV 108