RPSBLAST alignment for GI: 254780142 and conserved domain: TIGR02389

>gnl|CDD|162832 TIGR02389, RNA_pol_rpoA2, DNA-directed RNA polymerase, subunit A''. This family consists of the archaeal A'' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein. Length = 367

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 13/93 (13%)

Query: 1280 VEELNRSLAQQG-----------KKLVSFSPILQGITKASL--QTKSFISAASFQETTKV 1326
            +EE+ R+L +QG             L+++   ++ I +  +  +  S ++ A+F+ T K 
Sbjct: 270  IEEIKRTLEEQGLDVDIRHLMLVADLMTWDGEVRQIGRHGISGEKASVLARAAFEVTVKH 329

Query: 1327 LTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAI 1359
            L +AAI G+VD L G  EN+IVG+ IP GTG +
Sbjct: 330  LLDAAIRGEVDELAGVIENIIVGQPIPLGTGDV 362