RPSBLAST alignment for GI: 254780142 and conserved domain: TIGR02390
>gnl|CDD|162833 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'. This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein. Length = 868
Score = 275 bits (705), Expect = 5e-74
Identities = 241/905 (26%), Positives = 369/905 (40%), Gaps = 198/905 (21%)
Query: 19 DSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKR 78
S++ + SP +I +S E+ +T + + P GL R G I+
Sbjct: 5 GSIKFGLLSPEEIRKMSVVEVVTADTYDDDGY-PIEGGLMDPR-LGVIE----------- 51
Query: 79 MKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVER 138
G+ C+ CG +V HI+LA PV H F K I +L + R R
Sbjct: 52 ---PGLRCKTCGGKV---GECPGHFGHIELARPVVHVGFAKE----IYKILRATCRKCGR 101
Query: 139 VL--------YFESYVVVDPGLSSLEKYQILTEEEYVEAVSQF-----GQDQF-IAMMGA 184
+ Y E + L L E+ EA + G++Q I
Sbjct: 102 ITLTEEEIEQYLEKINKLKEEGGDLAS--TLIEKIVKEAAKRMKCPHCGEEQKKIKFEKP 159
Query: 185 DAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKL 244
YE D++ +R++L K + +++ P WM++ L
Sbjct: 160 TYFYEEGKEGDVKLTPSEIRERLEKIPD--------EDAELL-GINPKVARPEWMVLTVL 210
Query: 245 PVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQES 304
PV P +RP + L+ G + DL +I N RL AP++II + +LQ
Sbjct: 211 PVPPVTVRPSITLETGERSEDDLTHKLVDIIRINQRLKENIEAGAPQLIIEDLWELLQYH 270
Query: 305 VDALFDN-------GRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVI 357
V FDN RH+ RPLK+L+ LKGK+GRFR NL GKRV++S R+VI
Sbjct: 271 VATYFDNELPGIPPARHRS------GRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVI 324
Query: 358 VAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWD----- 412
P + +++ G+P+ +A EL P + + +++V P+ W
Sbjct: 325 SPDPNISINEVGVPEQIAKELTVPERVTPW-------NIDELREYVLNG-PDSWPGANYV 376
Query: 413 ----------------VLAE------VVHQH-----VVLLNRAPSLHRLSMQAFEPKIIS 445
LAE VV +H +VL NR PSLHR+SM + K++
Sbjct: 377 IRPDGRRIKIRDENKEELAERLEPGWVVERHLIDGDIVLFNRQPSLHRMSMMGHKVKVLP 436
Query: 446 GKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPS 505
GK +L+ VC YNADFDGD+M ++ + EA+ EAR LML ++L P G P+
Sbjct: 437 GKTFRLNLAVCPPYNADFDGDEMNLHVPQTEEARAEARELMLVEEHILTPRYGGPIIGGI 496
Query: 506 QDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSVDKDGNSIS 565
D + G YL T + + EV L Y +
Sbjct: 497 HDYISGA-YLLTHK-----STLFTKE--EVQTILGV----------AGYFGDPPEPAIEK 538
Query: 566 KIYDTTPGRMIIGEILPR----------------------HHEISFDICNQEMI-----K 598
T G+ I LP H+ I N +++ K
Sbjct: 539 PKEYWT-GKQIFSAFLPEDLNFEGRAKICSGSDACKKEECPHDAYVVIKNGKLLKGVIDK 597
Query: 599 KNISA----MVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESK---- 650
K I A ++ I R G ++ F D + RL R+ G + G DDI +P+
Sbjct: 598 KAIGAEKGKILHRIVREYGPEAARRFLDSVTRLFIRFITLRGFTTGIDDIDIPKEAKEEI 657
Query: 651 EKIIAEA----DKMVKEYENQYNDGLITRGEK---YNKVVDLWGKTTDKVTEEMMARIKR 703
E++I +A D +++ Y N + L R + K++++ GK D+ E +
Sbjct: 658 EELIEKAEKRVDNLIERYRNGELEPLPGRTVEETLEMKIMEVLGKARDEAGE-----VAE 712
Query: 704 VEFDPETGRQKKMNSIFMMSHSGARGSIHQMRQLGGM------------RGLIAK----- 746
DPE N +M+ +GARGS+ + Q+ M RG +
Sbjct: 713 KYLDPE-------NHAVIMARTGARGSLLNITQMAAMVGQQSVRGGRIRRGYRNRTLPHF 765
Query: 747 PSGEIIESP-----IRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVA 801
G+I +RS FK GL E+F GGR+GL+D +RT+ SGY+ RRL++
Sbjct: 766 KKGDI--GAKARGFVRSSFKKGLDPTEYFFHAAGGREGLVDTAVRTSQSGYMQRRLINAL 823
Query: 802 QNCVV 806
Q+ V
Sbjct: 824 QDLYV 828