RPSBLAST alignment for GI: 254780142 and conserved domain: PRK14844

>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional. Length = 2836
 Score = 1596 bits (4133), Expect = 0.0
 Identities = 752/1356 (55%), Positives = 995/1356 (73%), Gaps = 10/1356 (0%)

Query: 16   RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGK 75
            + F+ V ISIASP  I  +SYGEI+   T NYRTFK E+ GLFC +IFGP+ D EC+CGK
Sbjct: 1446 QSFNEVSISIASPESIKRMSYGEIEDVSTANYRTFKVEKGGLFCPKIFGPVNDDECLCGK 1505

Query: 76   YKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRD 135
            YK+ +++G ICEKCGVEVT S VRR+RM HI+LASPVAH WFLKSLPSRI  LL MSLRD
Sbjct: 1506 YKKRRHRGRICEKCGVEVTSSKVRRERMGHIELASPVAHIWFLKSLPSRIGALLDMSLRD 1565

Query: 136  VERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALD 195
            +E +LY ++Y+V+DP +S  EK +I++E+ Y EA   +G D F+AM G +AI ELL  LD
Sbjct: 1566 IENILYSDNYIVIDPLVSPFEKGEIISEKAYNEAKDSYGIDSFVAMQGVEAIRELLTRLD 1625

Query: 196  LQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLV 255
            L  +   LR +L   +S  RRKKIIKRL+IV++FI SGN P WMI+  +P+LPPDLRPLV
Sbjct: 1626 LHEIRKDLRLELESVASEIRRKKIIKRLRIVENFIKSGNRPEWMILTTIPILPPDLRPLV 1685

Query: 256  ALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHK 315
            +L+ GR A SDLN  YR +I RNNRL +L SL+ PEI+IRNEKRMLQE+VD+LFDN R  
Sbjct: 1686 SLESGRPAVSDLNHHYRTIINRNNRLRKLLSLNPPEIMIRNEKRMLQEAVDSLFDNSRRN 1745

Query: 316  RVVTGANRRPL-KSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLM 374
             +V  A      KS+SDMLKGKQGRFR NLLGKRVDYSGRSVIV GP L+L+QCGLPK M
Sbjct: 1746 ALVNKAGAVGYKKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKLNQCGLPKRM 1805

Query: 375  ALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRL 434
            ALELFKPF+Y++L+  G   T+K A K +  E+PEVWD+L EV+ +H VLLNRAP+LHRL
Sbjct: 1806 ALELFKPFVYSKLKMYGMAPTIKFASKLIRAEKPEVWDMLEEVIKEHPVLLNRAPTLHRL 1865

Query: 435  SMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLH 494
             +QAFEP +I GKAIQLHPLVC  +NADFDGDQMAV+  IS EAQLEARVLM+STNN+L 
Sbjct: 1866 GIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPISLEAQLEARVLMMSTNNVLS 1925

Query: 495  PASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRY 554
            P++G P+ VPS+D+VLG+ YL T+ E    +   F    EV H+L +  + +HS I+ R 
Sbjct: 1926 PSNGRPIIVPSKDIVLGIYYL-TLQEPKEDDLPSFGAFCEVEHSLSDGTLHIHSSIKYRM 1984

Query: 555  KSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQ 614
            + ++  G +  K   TTPGR+I+ +I P+H  + FD+ NQ +  K I+++VD +YR+CGQ
Sbjct: 1985 EYINSSGETHYKTICTTPGRLILWQIFPKHENLGFDLINQVLTVKEITSIVDLVYRNCGQ 2044

Query: 615  KSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLIT 674
             +TVAF D LM LGF YA  SG+SF + D+++PE+K   +  A   +K++  QY DGLIT
Sbjct: 2045 SATVAFSDKLMVLGFEYATFSGVSFSRCDMVIPETKATHVDHARGEIKKFSMQYQDGLIT 2104

Query: 675  RGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQM 734
            R E+YNKV+D W K TD +  +M+  I   +         K NS++MM +SGARGS  QM
Sbjct: 2105 RSERYNKVIDEWSKCTDMIANDMLKAISIYD------GNSKYNSVYMMVNSGARGSTSQM 2158

Query: 735  RQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLS 794
            +QL GMRGL+ KPSGEIIE+PI S+F+ GL  FE+F S  G RKGL D  ++TA+SGYL+
Sbjct: 2159 KQLAGMRGLMTKPSGEIIETPIISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLT 2218

Query: 795  RRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPLTNECI 854
            RRLVDV+QNC+V + DC TK GL +   V+   +V SL S VLGRTA +DI NP+T E +
Sbjct: 2219 RRLVDVSQNCIVTKHDCKTKNGLVVRATVEGSTIVASLESVVLGRTAANDIYNPVTKELL 2278

Query: 855  VKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGV 914
            VKAG+LI E  V +I   G+  V+IRS LTCE S GVC LCYGRDLA G +V++GEAVGV
Sbjct: 2279 VKAGELIDEDKVKQINIAGLDVVKIRSPLTCEISPGVCSLCYGRDLATGKIVSIGEAVGV 2338

Query: 915  IAAQSIGEPGTQLTMRTFHLGGAVTV-MDRSFIESPCDGIVKIKNRNVCRNSTNDLISMG 973
            IAAQS+GEPGTQLTMRTFH+GG +T  ++ S I +  +  +K+ N N+  +   + I + 
Sbjct: 2339 IAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKIKLNNSNIIIDKNGNKIVIS 2398

Query: 974  RNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHTFPIITEVSGTVGF 1033
            R+  + ++D  G E+  H + YGAKL+VD+GG ++ G +++EWDP+T PIITE +GTV +
Sbjct: 2399 RSCEVVLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDPYTLPIITEKTGTVSY 2458

Query: 1034 EDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENGVVLKSARGTDARW 1093
            +DL DGIS+ E + ESTGI+ + V DW+  S   NL+P IV+ D+NG V+  A G +A +
Sbjct: 2459 QDLKDGISITEVMDESTGISSKVVKDWKLYSGGANLRPRIVLLDDNGKVMTLASGVEACY 2518

Query: 1094 FLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFEARRPKNHAILAEI 1153
            F+P+ A+L+V  GQKV  GDV+ R P  S KT+DIT GLPRV ELFEARRPK HAI++EI
Sbjct: 2519 FIPIGAVLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPKEHAIVSEI 2578

Query: 1154 SGTIRI-KRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPVP 1212
             G +   +++ + K  ++I+P ++ + P EY + ++KH  + +GD V KGD ++DG+P  
Sbjct: 2579 DGYVAFSEKDRRGKRSILIKPVDEQISPVEYLVSRSKHVIVNEGDFVRKGDLLMDGDPDL 2638

Query: 1213 QDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVEITDPADTEYILG 1272
             DILR+ G+EALA Y+I+E+Q+VYRL+GV I++KH+EV+++ MLQKVEITDP DT Y++G
Sbjct: 2639 HDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPGDTMYLVG 2698

Query: 1273 DNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASFQETTKVLTEAAI 1332
            +++D++EV+  N +++  GK+   + PILQGIT+ASL+T SFISAASFQETTKVLTEAA 
Sbjct: 2699 ESIDKLEVDRENDAMSNSGKRPAHYLPILQGITRASLETSSFISAASFQETTKVLTEAAF 2758

Query: 1333 AGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRVAM 1368
             GK D L G KENVIVGR IPAGTG I+++ R +++
Sbjct: 2759 CGKSDPLSGLKENVIVGRLIPAGTGLIMNKVRALSL 2794