RPSBLAST alignment for GI: 254780142 and conserved domain: CHL00018
>gnl|CDD|176961 CHL00018, rpoC1, RNA polymerase beta' subunit. Length = 663
Score = 704 bits (1820), Expect = 0.0
Identities = 264/648 (40%), Positives = 374/648 (57%), Gaps = 63/648 (9%)
Query: 14 DDRGFDSVRISIASPAKIASLSY---------GEIKKPETINYRTFKPERDGLFCARIFG 64
D +RI +ASP +I + + GE+ KP TI+Y+T KPE+DGLFC RIFG
Sbjct: 3 DRYKHQQLRIGLASPQQIRAWAERILPNGEIVGEVTKPYTIHYKTNKPEKDGLFCERIFG 62
Query: 65 PIKDYECICGKYKRM---KYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSL 121
PIK C CG Y+ + K CE+CGVE T S VRR RM +I LA PV H W+LK L
Sbjct: 63 PIKSGICACGNYRVIGDEKEDPKFCEQCGVEFTDSRVRRYRMGYIKLACPVTHVWYLKRL 122
Query: 122 PSRISTLLGMSLRDVERVLYFE-SYVVVDPGLSSLEKYQILTEEE---YVEAVSQF---- 173
PS I+ LL L+++E ++Y + S+ + + + L E E + ++ F
Sbjct: 123 PSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFSTQ 182
Query: 174 GQDQF----IAMMGADAIYELLIALDLQNLALTLRDQ---LSKSSSIF----------RR 216
G D F I+ GA AI E L LDL+ + + L + S R+
Sbjct: 183 GFDTFRNREIST-GAGAIREQLADLDLRIIIDNSLVEWKELGEEGSTGNEWEDRKIGRRK 241
Query: 217 KKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIG 276
+++R+K+ FI + P WM++ LPVLPP+LRP++ LD G+ +SDLN+LYRRVI
Sbjct: 242 DFLVRRIKLAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQLDGGKLMSSDLNELYRRVIY 301
Query: 277 RNNRLMRLKSLH--APEIIIRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLK 334
RNN L L + P ++ +K++LQE+VDAL DNG + + + +P KS SD+++
Sbjct: 302 RNNTLTDLLTTSRSTPGELVMCQKKLLQEAVDALLDNGIRGQPMRDGHNKPYKSFSDVIE 361
Query: 335 GKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVS 394
GK+GRFR NLLGKRVDYSGRSVIV GP L LHQCGLP+ +A+ELF+PF+ L ++ S
Sbjct: 362 GKEGRFRENLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQPFVIRGLIRQHLAS 421
Query: 395 TVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPL 454
++ AK + ++ P VW++L EV+ H VLLNRAP+LHRL +QAF+P ++ G+AI LHPL
Sbjct: 422 NIRAAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPL 481
Query: 455 VCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCY 514
VC G+NADFDGDQMAV+ +S EAQ EAR+LM S NLL PA G P++VPSQDM+LGL
Sbjct: 482 VCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPSQDMLLGLYV 541
Query: 515 L-------------STVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSVDKDG 561
L + + + + F++ + A K + L S + R++ +
Sbjct: 542 LTIGNRRGIYANRYNPCNRKNSTKEPYFSNSYDALGAYRQKRINLDSPLWLRWRLDQRII 601
Query: 562 NSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIY 609
S R + E+ +I +I K+ + +IY
Sbjct: 602 AS----------REVPIEVQYESLGTYHEIYEHYLIVKSRKKEILSIY 639