RPSBLAST alignment for GI: 254780142 and conserved domain: CHL00117
>gnl|CDD|177040 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed. Length = 1364
Score = 334 bits (858), Expect = 1e-91
Identities = 145/379 (38%), Positives = 212/379 (55%), Gaps = 18/379 (4%)
Query: 592 CNQEMIKKNISAMVDTIYR---HCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPE 648
N+ + K A+ I H G T D L LGF+ A ++GIS G DD++ P
Sbjct: 10 HNKVIDKT---ALKRLISWLIDHFGMAYTSHILDQLKTLGFQQATAAGISLGIDDLLTPP 66
Query: 649 SKEKIIAEADKMVKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDP 708
SK ++ +A++ E Y+ G + EK + +++W T++ + +EM + DP
Sbjct: 67 SKGWLVQDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLKQEMNPNFR--MTDP 124
Query: 709 ETGRQKKMNSIFMMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFE 768
+N ++MMS SGARG+ Q+ QL GMRGL++ P G+II+ PI+S+F+ GL E
Sbjct: 125 -------LNPVYMMSFSGARGNASQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLTE 177
Query: 769 FFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQV 828
+ SC G RKG++D +RTA +GYL+RRLV+V Q+ VV + DC T +G++++ + +
Sbjct: 178 YIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIVVRETDCGTTRGISVS-PRNGMMI 236
Query: 829 VYSLGSRVLGRTALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESS 888
L ++GR DDI + + CI Q I N + + IRS LTC S+
Sbjct: 237 ERILIQTLIGRVLADDIY--IGSRCIATRNQDIGIGLANRFITFRAQPISIRSPLTCRST 294
Query: 889 RGVCVLCYGRDLARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIES 948
+C LCYG LA G LV +GEAVG+IA QSIGEPGTQLT+RTFH GG T + +
Sbjct: 295 SWICQLCYGWSLAHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRA 354
Query: 949 PCDGIVKIKNRNVCRNSTN 967
P +G +K V T
Sbjct: 355 PFNGKIKFNEDLVHPTRTR 373