RPSBLAST alignment for GI: 254780142 and conserved domain: PRK00566

>gnl|CDD|179068 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional. Length = 1156
 Score = 1716 bits (4448), Expect = 0.0
 Identities = 596/1019 (58%), Positives = 731/1019 (71%), Gaps = 50/1019 (4%)

Query: 18   FDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYK 77
            FD+++I +ASP KI S SYGE+KKPETINYRT KPERDGLFC RIFGP KDYEC+CGKYK
Sbjct: 7    FDAIKIGLASPEKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDYECLCGKYK 66

Query: 78   RMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVE 137
            R++YKGIICE+CGVEVT S VRR+RM HI+LA+PVAH WF KSLPSRI  LL MSL+D+E
Sbjct: 67   RVRYKGIICERCGVEVTRSKVRRERMGHIELAAPVAHIWFFKSLPSRIGLLLDMSLKDLE 126

Query: 138  RVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQ 197
            RVLYFESYVV+DPG + LEK Q+LTEEEY EA+ ++G D+F+A MGA+AI ELL  +DL+
Sbjct: 127  RVLYFESYVVIDPGDTPLEKKQLLTEEEYREALEEYG-DEFVAKMGAEAIKELLKNIDLE 185

Query: 198  NLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVAL 257
              A  LR++L ++ S  +RKK +KRLK+V++F  SGN P WMI+  LPV+PPDLRPLV L
Sbjct: 186  AEAEELREELKETGSEQKRKKALKRLKVVEAFRKSGNKPEWMILDVLPVIPPDLRPLVQL 245

Query: 258  DFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRV 317
            D GRFA SDLNDLYRRVI RNNRL RL  L APEII+RNEKRMLQE+VDALFDNGR  R 
Sbjct: 246  DGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIVRNEKRMLQEAVDALFDNGRRGRP 305

Query: 318  VTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALE 377
            VTG N RPLKSLSDMLKGKQGRFR NLLGKRVDYSGRSVIV GPEL+LHQCGLPK MALE
Sbjct: 306  VTGPNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALE 365

Query: 378  LFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQ 437
            LFKPF+  +L ++G  +T+K AKK VE+E PEVWDVL EV+ +H VLLNRAP+LHRL +Q
Sbjct: 366  LFKPFIMKKLVERGLATTIKSAKKMVEREDPEVWDVLEEVIKEHPVLLNRAPTLHRLGIQ 425

Query: 438  AFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPAS 497
            AFEP +I GKAIQLHPLVC  +NADFDGDQMAV+  +S EAQ EARVLMLS+NN+L PA+
Sbjct: 426  AFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQAEARVLMLSSNNILSPAN 485

Query: 498  GAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSV 557
            G P+ VPSQDMVLGL YL+   EG  GEGM+F+   E   A EN  V LH++I+ R  S 
Sbjct: 486  GKPIIVPSQDMVLGLYYLTREREGAKGEGMVFSSPEEALRAYENGEVDLHARIKVRITS- 544

Query: 558  DKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKST 617
                    K+ +TT GR+I  EILP    + F   N+ + KK IS +++ +YR  G K T
Sbjct: 545  -------KKLVETTVGRVIFNEILPE--GLPFINVNKPLKKKEISKIINEVYRRYGLKET 595

Query: 618  VAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGE 677
            V F D +  LGF+YA  SGIS G DDI++P  K++II EA+K V E E QY  GLIT GE
Sbjct: 596  VIFLDKIKDLGFKYATRSGISIGIDDIVIPPEKKEIIEEAEKEVAEIEKQYRRGLITDGE 655

Query: 678  KYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQMRQL 737
            +YNKV+D+W K TD+V + MM  + +         Q+  N I+MM+ SGARGS  Q+RQL
Sbjct: 656  RYNKVIDIWSKATDEVAKAMMKNLSK--------DQESFNPIYMMADSGARGSASQIRQL 707

Query: 738  GGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRL 797
             GMRGL+AKPSGEIIE+PI+S+F+ GL   E+F S  G RKGL D  ++TA SGYL+RRL
Sbjct: 708  AGMRGLMAKPSGEIIETPIKSNFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRL 767

Query: 798  VDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPLTNECIVKA 857
            VDVAQ+ +V + DC T +G+ +T I++ G+V+  L  R+LGR   +D+++P T E IV A
Sbjct: 768  VDVAQDVIVREDDCGTDRGIEVTAIIEGGEVIEPLEERILGRVLAEDVVDPETGEVIVPA 827

Query: 858  GQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAA 917
            G LI E   ++IE+ GI  V+IRS LTCE+  GVC  CYGRDLA G LVN+GEAVGVIAA
Sbjct: 828  GTLIDEEIADKIEEAGIEEVKIRSVLTCETRHGVCAKCYGRDLATGKLVNIGEAVGVIAA 887

Query: 918  QSIGEPGTQLTMRTFHLGG---------------AVTVMDRSFIESPCDGIVKIKNRNVC 962
            QSIGEPGTQLTMRTFH GG               A      + I +  DG V        
Sbjct: 888  QSIGEPGTQLTMRTFHTGGVDITGGLPRVAELFEARKPKGPAII-AEIDGTVSF------ 940

Query: 963  RNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEW--DPH 1019
                       +     ++     E+  + I  G  L V +G  +E G ++++   DPH
Sbjct: 941  -------GKETKGKRRIVITPDDGEEREYLIPKGKHLLVQEGDHVEAGDKLTDGSIDPH 992