RPSBLAST alignment for GI: 254780142 and conserved domain: PRK00566
>gnl|CDD|179068 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional. Length = 1156
Score = 1716 bits (4448), Expect = 0.0
Identities = 596/1019 (58%), Positives = 731/1019 (71%), Gaps = 50/1019 (4%)
Query: 18 FDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYK 77
FD+++I +ASP KI S SYGE+KKPETINYRT KPERDGLFC RIFGP KDYEC+CGKYK
Sbjct: 7 FDAIKIGLASPEKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDYECLCGKYK 66
Query: 78 RMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVE 137
R++YKGIICE+CGVEVT S VRR+RM HI+LA+PVAH WF KSLPSRI LL MSL+D+E
Sbjct: 67 RVRYKGIICERCGVEVTRSKVRRERMGHIELAAPVAHIWFFKSLPSRIGLLLDMSLKDLE 126
Query: 138 RVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQ 197
RVLYFESYVV+DPG + LEK Q+LTEEEY EA+ ++G D+F+A MGA+AI ELL +DL+
Sbjct: 127 RVLYFESYVVIDPGDTPLEKKQLLTEEEYREALEEYG-DEFVAKMGAEAIKELLKNIDLE 185
Query: 198 NLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVAL 257
A LR++L ++ S +RKK +KRLK+V++F SGN P WMI+ LPV+PPDLRPLV L
Sbjct: 186 AEAEELREELKETGSEQKRKKALKRLKVVEAFRKSGNKPEWMILDVLPVIPPDLRPLVQL 245
Query: 258 DFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRV 317
D GRFA SDLNDLYRRVI RNNRL RL L APEII+RNEKRMLQE+VDALFDNGR R
Sbjct: 246 DGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIVRNEKRMLQEAVDALFDNGRRGRP 305
Query: 318 VTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALE 377
VTG N RPLKSLSDMLKGKQGRFR NLLGKRVDYSGRSVIV GPEL+LHQCGLPK MALE
Sbjct: 306 VTGPNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALE 365
Query: 378 LFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQ 437
LFKPF+ +L ++G +T+K AKK VE+E PEVWDVL EV+ +H VLLNRAP+LHRL +Q
Sbjct: 366 LFKPFIMKKLVERGLATTIKSAKKMVEREDPEVWDVLEEVIKEHPVLLNRAPTLHRLGIQ 425
Query: 438 AFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPAS 497
AFEP +I GKAIQLHPLVC +NADFDGDQMAV+ +S EAQ EARVLMLS+NN+L PA+
Sbjct: 426 AFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQAEARVLMLSSNNILSPAN 485
Query: 498 GAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALENKIVTLHSKIRGRYKSV 557
G P+ VPSQDMVLGL YL+ EG GEGM+F+ E A EN V LH++I+ R S
Sbjct: 486 GKPIIVPSQDMVLGLYYLTREREGAKGEGMVFSSPEEALRAYENGEVDLHARIKVRITS- 544
Query: 558 DKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKST 617
K+ +TT GR+I EILP + F N+ + KK IS +++ +YR G K T
Sbjct: 545 -------KKLVETTVGRVIFNEILPE--GLPFINVNKPLKKKEISKIINEVYRRYGLKET 595
Query: 618 VAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGE 677
V F D + LGF+YA SGIS G DDI++P K++II EA+K V E E QY GLIT GE
Sbjct: 596 VIFLDKIKDLGFKYATRSGISIGIDDIVIPPEKKEIIEEAEKEVAEIEKQYRRGLITDGE 655
Query: 678 KYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQMRQL 737
+YNKV+D+W K TD+V + MM + + Q+ N I+MM+ SGARGS Q+RQL
Sbjct: 656 RYNKVIDIWSKATDEVAKAMMKNLSK--------DQESFNPIYMMADSGARGSASQIRQL 707
Query: 738 GGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRL 797
GMRGL+AKPSGEIIE+PI+S+F+ GL E+F S G RKGL D ++TA SGYL+RRL
Sbjct: 708 AGMRGLMAKPSGEIIETPIKSNFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRL 767
Query: 798 VDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPLTNECIVKA 857
VDVAQ+ +V + DC T +G+ +T I++ G+V+ L R+LGR +D+++P T E IV A
Sbjct: 768 VDVAQDVIVREDDCGTDRGIEVTAIIEGGEVIEPLEERILGRVLAEDVVDPETGEVIVPA 827
Query: 858 GQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAA 917
G LI E ++IE+ GI V+IRS LTCE+ GVC CYGRDLA G LVN+GEAVGVIAA
Sbjct: 828 GTLIDEEIADKIEEAGIEEVKIRSVLTCETRHGVCAKCYGRDLATGKLVNIGEAVGVIAA 887
Query: 918 QSIGEPGTQLTMRTFHLGG---------------AVTVMDRSFIESPCDGIVKIKNRNVC 962
QSIGEPGTQLTMRTFH GG A + I + DG V
Sbjct: 888 QSIGEPGTQLTMRTFHTGGVDITGGLPRVAELFEARKPKGPAII-AEIDGTVSF------ 940
Query: 963 RNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEW--DPH 1019
+ ++ E+ + I G L V +G +E G ++++ DPH
Sbjct: 941 -------GKETKGKRRIVITPDDGEEREYLIPKGKHLLVQEGDHVEAGDKLTDGSIDPH 992