RPSBLAST alignment for GI: 254780142 and conserved domain: PRK02625
>gnl|CDD|179452 PRK02625, rpoC1, DNA-directed RNA polymerase subunit gamma; Provisional. Length = 627
Score = 763 bits (1972), Expect = 0.0
Identities = 330/617 (53%), Positives = 431/617 (69%), Gaps = 51/617 (8%)
Query: 10 NPWTDDRGFDSVRISIASPAKIASLS---------YGEIKKPETINYRTFKPERDGLFCA 60
N T++R FD V+I +ASP +I GE+ KPETINYRT KPE DGLFC
Sbjct: 2 NLRTENR-FDYVKIGLASPERIRQWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE 60
Query: 61 RIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKS 120
+IFGP KD+EC CGKYKR++++GI+CE+CGVEVT S VRR RM I LA+PV H W+LK
Sbjct: 61 KIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVTHVWYLKG 120
Query: 121 LPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKY-QILTEEEYVEAVSQ-FGQDQF 178
+PS ++ LL M LRDVE+++YF YVV+DPG KY Q+LTE++++E Q + +D
Sbjct: 121 IPSYVAILLDMPLRDVEQIVYFNCYVVLDPGNHKNLKYKQLLTEDQWLEIEDQIYAEDSE 180
Query: 179 I-----AMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSG 233
+ +GA+A+ LL L+L+ A LR++++ S +R K+IKRL+++D+FI +G
Sbjct: 181 LEGEEVVGIGAEALKRLLEDLNLEEEAEQLREEIANSKGQ-KRAKLIKRLRVIDNFIATG 239
Query: 234 NNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEII 293
+ P WM++ +PV+PPDLRP+V LD GRFA SDLNDLYRRVI RNNRL RL+ + APEII
Sbjct: 240 SRPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEII 299
Query: 294 IRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSG 353
+RNEKRMLQE+VDAL DNGR R V GAN RPLKSLSD+++GKQGRFR NLLGKRVDYSG
Sbjct: 300 VRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSG 359
Query: 354 RSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDV 413
RSVIV GP+L++HQCGLPK MA+ELF+PF+ +L ++G V+ +K AKK +++ PEVW V
Sbjct: 360 RSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQGIVNNIKAAKKLIQRADPEVWQV 419
Query: 414 LAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAV 473
L EV+ H VLLNRAP+LHRL +QAFEP ++ G+AIQLHPLVC +NADFDGDQMAV+
Sbjct: 420 LEEVIEGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 479
Query: 474 ISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDP-GEGMLFADM 532
+S EAQ EAR+LML++NN+L PA+G P+ PSQDMVLG YL+ + G G G FA +
Sbjct: 480 LSLEAQAEARLLMLASNNILSPATGEPIVTPSQDMVLGCYYLTAENPGAQKGAGRYFASL 539
Query: 533 GEVYHALENKIVTLHSKIRGRYKS--------------------------------VDKD 560
+V A E + LH+ + R+ D+D
Sbjct: 540 EDVIMAFEQGRIDLHAWVWVRFNGEVEDDDEDTEPLKTETLEDGTRIEQYRYRRDRFDED 599
Query: 561 GNSISKIYDTTPGRMII 577
GN IS+ TT GR+I+
Sbjct: 600 GNLISQYILTTVGRVIM 616