RPSBLAST alignment for GI: 254780142 and conserved domain: PRK02625

>gnl|CDD|179452 PRK02625, rpoC1, DNA-directed RNA polymerase subunit gamma; Provisional. Length = 627
 Score =  763 bits (1972), Expect = 0.0
 Identities = 330/617 (53%), Positives = 431/617 (69%), Gaps = 51/617 (8%)

Query: 10  NPWTDDRGFDSVRISIASPAKIASLS---------YGEIKKPETINYRTFKPERDGLFCA 60
           N  T++R FD V+I +ASP +I              GE+ KPETINYRT KPE DGLFC 
Sbjct: 2   NLRTENR-FDYVKIGLASPERIRQWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE 60

Query: 61  RIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKS 120
           +IFGP KD+EC CGKYKR++++GI+CE+CGVEVT S VRR RM  I LA+PV H W+LK 
Sbjct: 61  KIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVTHVWYLKG 120

Query: 121 LPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKY-QILTEEEYVEAVSQ-FGQDQF 178
           +PS ++ LL M LRDVE+++YF  YVV+DPG     KY Q+LTE++++E   Q + +D  
Sbjct: 121 IPSYVAILLDMPLRDVEQIVYFNCYVVLDPGNHKNLKYKQLLTEDQWLEIEDQIYAEDSE 180

Query: 179 I-----AMMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSG 233
           +       +GA+A+  LL  L+L+  A  LR++++ S    +R K+IKRL+++D+FI +G
Sbjct: 181 LEGEEVVGIGAEALKRLLEDLNLEEEAEQLREEIANSKGQ-KRAKLIKRLRVIDNFIATG 239

Query: 234 NNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEII 293
           + P WM++  +PV+PPDLRP+V LD GRFA SDLNDLYRRVI RNNRL RL+ + APEII
Sbjct: 240 SRPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEII 299

Query: 294 IRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSG 353
           +RNEKRMLQE+VDAL DNGR  R V GAN RPLKSLSD+++GKQGRFR NLLGKRVDYSG
Sbjct: 300 VRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSG 359

Query: 354 RSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDV 413
           RSVIV GP+L++HQCGLPK MA+ELF+PF+  +L ++G V+ +K AKK +++  PEVW V
Sbjct: 360 RSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQGIVNNIKAAKKLIQRADPEVWQV 419

Query: 414 LAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAV 473
           L EV+  H VLLNRAP+LHRL +QAFEP ++ G+AIQLHPLVC  +NADFDGDQMAV+  
Sbjct: 420 LEEVIEGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 479

Query: 474 ISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDP-GEGMLFADM 532
           +S EAQ EAR+LML++NN+L PA+G P+  PSQDMVLG  YL+  + G   G G  FA +
Sbjct: 480 LSLEAQAEARLLMLASNNILSPATGEPIVTPSQDMVLGCYYLTAENPGAQKGAGRYFASL 539

Query: 533 GEVYHALENKIVTLHSKIRGRYKS--------------------------------VDKD 560
            +V  A E   + LH+ +  R+                                   D+D
Sbjct: 540 EDVIMAFEQGRIDLHAWVWVRFNGEVEDDDEDTEPLKTETLEDGTRIEQYRYRRDRFDED 599

Query: 561 GNSISKIYDTTPGRMII 577
           GN IS+   TT GR+I+
Sbjct: 600 GNLISQYILTTVGRVIM 616