RPSBLAST alignment for GI: 254780142 and conserved domain: PRK14906

>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha domain fusion protein; Provisional. Length = 1460
 Score =  829 bits (2142), Expect = 0.0
 Identities = 414/908 (45%), Positives = 565/908 (62%), Gaps = 67/908 (7%)

Query: 155  LEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIF 214
            +E  Q++++E     +       F   MGA+A+ +LL A+DL+  A  LR  ++      
Sbjct: 232  IEPKQLISDEALYREMRLNYSIYFKGGMGAEAVRDLLDAIDLEKEAEELRAIIANGKGQ- 290

Query: 215  RRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRV 274
            +R+K +KRLK+VD+F+ SGN+P  MI+  +PV+PPDLRP+V LD GRFA SDLNDLYRRV
Sbjct: 291  KREKAVKRLKVVDAFLKSGNDPADMILDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRV 350

Query: 275  IGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLK 334
            I RNNRL RL  L APEII+ NEKRMLQE+VD+LFDNGR  R VTG   RPLKSL+DMLK
Sbjct: 351  INRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLADMLK 410

Query: 335  GKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVS 394
            GKQGRFR NLLGKRVDYSGRSVIV GP L+LHQCGLP  MALELFKPF+  +L +  Y +
Sbjct: 411  GKQGRFRQNLLGKRVDYSGRSVIVVGPHLKLHQCGLPSAMALELFKPFVMKRLVELEYAA 470

Query: 395  TVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPL 454
             +K AK+ V++    VWDVL EV+  H VLLNRAP+LHRL +QAFEP ++ GKAI+LHPL
Sbjct: 471  NIKAAKRAVDRGASYVWDVLEEVIQDHPVLLNRAPTLHRLGIQAFEPVLVEGKAIKLHPL 530

Query: 455  VCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCY 514
            VC  +NADFDGDQMAV+  +S +AQ EARVLMLS+NN+  PA G P+TVP+QDM++G+ Y
Sbjct: 531  VCTAFNADFDGDQMAVHVPLSTQAQAEARVLMLSSNNIKSPAHGRPLTVPTQDMIIGVYY 590

Query: 515  LSTVHEGDPGEGMLFADMGEVYHALE-NKIVTLHSKI----------RGRYKSVDKDGNS 563
            L+T  +G  GEG  FAD  +  +A +    + L +KI          RG Y   D +   
Sbjct: 591  LTTERDGFEGEGRTFADFDDALNAYDARADLDLQAKIVVRLSRDMTVRGSYG--DLEETK 648

Query: 564  ISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKSTVAFCDD 623
              +  +TT GR+I  ++LP      +   N +M+KK+I  +V+               D 
Sbjct: 649  AGERIETTVGRIIFNQVLPE----DYPYLNYKMVKKDIGRLVNDCCNRYSTAEVEPILDG 704

Query: 624  LMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGEKYNKVV 683
            + + GF YA  +G++    D  +P+ K +I+AEAD+ V   +  Y DG ++  E++ +VV
Sbjct: 705  IKKTGFHYATRAGLTVSVYDATIPDDKPEILAEADEKVAAIDEDYEDGFLSERERHKQVV 764

Query: 684  DLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQMRQLGGMRGL 743
            D+W + T++V E M+A      FD       + N I+MM+ SGARG+I Q+RQL GMRGL
Sbjct: 765  DIWTEATEEVGEAMLA-----GFD-------EDNPIYMMADSGARGNIKQIRQLAGMRGL 812

Query: 744  IAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQN 803
            +A   GEII+ PI+++F+ GL   E+F S  G RKGL+D  +RTA SGYL+RRLVDVAQ+
Sbjct: 813  MADMKGEIIDLPIKANFREGLSVLEYFISTHGARKGLVDTALRTADSGYLTRRLVDVAQD 872

Query: 804  CVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPLTNECIVKAGQLILE 863
             +V + DC T +G+T   +   G V  +L    +GR  L+D+ +P   E ++ AG  I  
Sbjct: 873  VIVREEDCGTDEGVTYPLVKPKGDVDTNL----IGRCLLEDVCDP-NGEVLLSAGDYI-- 925

Query: 864  SHVNEIEK---CGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAAQSI 920
              ++++++    G+  V+IR+ +TC +  GVC  CYG DLA    VN+G AVG+IAAQSI
Sbjct: 926  ESMDDLKRLVEAGVTKVQIRTLMTCHAEYGVCQKCYGWDLATRRPVNIGTAVGIIAAQSI 985

Query: 921  GEPGTQLTMRTFHLGG--------AVTVMDRSFIESPCDGIVKIKNRNVCRNSTNDL-IS 971
            GEPGTQLTMRTFH GG         +  +   F         K K   V    +  L I+
Sbjct: 986  GEPGTQLTMRTFHSGGVAGDDITQGLPRVAELF------EARKPKGEAVLAEISGTLQIT 1039

Query: 972  MGRNT-TLQILDMSGQEQ-----YSHRIMYGAKLFVDDGGVIECGQRISEW--DPHTFPI 1023
              +   TL I D  G  +        + M G    V+DG  +  GQ+I+    +PH    
Sbjct: 1040 GDKTEKTLTIHDQDGNSREYVVSARVQFMPG----VEDGVEVRVGQQITRGSVNPHDLLR 1095

Query: 1024 ITEVSGTV 1031
            +T+ + T+
Sbjct: 1096 LTDPNTTL 1103