RPSBLAST alignment for GI: 254780142 and conserved domain: PRK14906
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha domain fusion protein; Provisional. Length = 1460
Score = 829 bits (2142), Expect = 0.0
Identities = 414/908 (45%), Positives = 565/908 (62%), Gaps = 67/908 (7%)
Query: 155 LEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQNLALTLRDQLSKSSSIF 214
+E Q++++E + F MGA+A+ +LL A+DL+ A LR ++
Sbjct: 232 IEPKQLISDEALYREMRLNYSIYFKGGMGAEAVRDLLDAIDLEKEAEELRAIIANGKGQ- 290
Query: 215 RRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRV 274
+R+K +KRLK+VD+F+ SGN+P MI+ +PV+PPDLRP+V LD GRFA SDLNDLYRRV
Sbjct: 291 KREKAVKRLKVVDAFLKSGNDPADMILDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRV 350
Query: 275 IGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVTGANRRPLKSLSDMLK 334
I RNNRL RL L APEII+ NEKRMLQE+VD+LFDNGR R VTG RPLKSL+DMLK
Sbjct: 351 INRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLADMLK 410
Query: 335 GKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELFKPFLYAQLEKKGYVS 394
GKQGRFR NLLGKRVDYSGRSVIV GP L+LHQCGLP MALELFKPF+ +L + Y +
Sbjct: 411 GKQGRFRQNLLGKRVDYSGRSVIVVGPHLKLHQCGLPSAMALELFKPFVMKRLVELEYAA 470
Query: 395 TVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPL 454
+K AK+ V++ VWDVL EV+ H VLLNRAP+LHRL +QAFEP ++ GKAI+LHPL
Sbjct: 471 NIKAAKRAVDRGASYVWDVLEEVIQDHPVLLNRAPTLHRLGIQAFEPVLVEGKAIKLHPL 530
Query: 455 VCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCY 514
VC +NADFDGDQMAV+ +S +AQ EARVLMLS+NN+ PA G P+TVP+QDM++G+ Y
Sbjct: 531 VCTAFNADFDGDQMAVHVPLSTQAQAEARVLMLSSNNIKSPAHGRPLTVPTQDMIIGVYY 590
Query: 515 LSTVHEGDPGEGMLFADMGEVYHALE-NKIVTLHSKI----------RGRYKSVDKDGNS 563
L+T +G GEG FAD + +A + + L +KI RG Y D +
Sbjct: 591 LTTERDGFEGEGRTFADFDDALNAYDARADLDLQAKIVVRLSRDMTVRGSYG--DLEETK 648
Query: 564 ISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKSTVAFCDD 623
+ +TT GR+I ++LP + N +M+KK+I +V+ D
Sbjct: 649 AGERIETTVGRIIFNQVLPE----DYPYLNYKMVKKDIGRLVNDCCNRYSTAEVEPILDG 704
Query: 624 LMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRGEKYNKVV 683
+ + GF YA +G++ D +P+ K +I+AEAD+ V + Y DG ++ E++ +VV
Sbjct: 705 IKKTGFHYATRAGLTVSVYDATIPDDKPEILAEADEKVAAIDEDYEDGFLSERERHKQVV 764
Query: 684 DLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGARGSIHQMRQLGGMRGL 743
D+W + T++V E M+A FD + N I+MM+ SGARG+I Q+RQL GMRGL
Sbjct: 765 DIWTEATEEVGEAMLA-----GFD-------EDNPIYMMADSGARGNIKQIRQLAGMRGL 812
Query: 744 IAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGLLDVVMRTASSGYLSRRLVDVAQN 803
+A GEII+ PI+++F+ GL E+F S G RKGL+D +RTA SGYL+RRLVDVAQ+
Sbjct: 813 MADMKGEIIDLPIKANFREGLSVLEYFISTHGARKGLVDTALRTADSGYLTRRLVDVAQD 872
Query: 804 CVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDIINPLTNECIVKAGQLILE 863
+V + DC T +G+T + G V +L +GR L+D+ +P E ++ AG I
Sbjct: 873 VIVREEDCGTDEGVTYPLVKPKGDVDTNL----IGRCLLEDVCDP-NGEVLLSAGDYI-- 925
Query: 864 SHVNEIEK---CGIRSVRIRSALTCESSRGVCVLCYGRDLARGSLVNVGEAVGVIAAQSI 920
++++++ G+ V+IR+ +TC + GVC CYG DLA VN+G AVG+IAAQSI
Sbjct: 926 ESMDDLKRLVEAGVTKVQIRTLMTCHAEYGVCQKCYGWDLATRRPVNIGTAVGIIAAQSI 985
Query: 921 GEPGTQLTMRTFHLGG--------AVTVMDRSFIESPCDGIVKIKNRNVCRNSTNDL-IS 971
GEPGTQLTMRTFH GG + + F K K V + L I+
Sbjct: 986 GEPGTQLTMRTFHSGGVAGDDITQGLPRVAELF------EARKPKGEAVLAEISGTLQIT 1039
Query: 972 MGRNT-TLQILDMSGQEQ-----YSHRIMYGAKLFVDDGGVIECGQRISEW--DPHTFPI 1023
+ TL I D G + + M G V+DG + GQ+I+ +PH
Sbjct: 1040 GDKTEKTLTIHDQDGNSREYVVSARVQFMPG----VEDGVEVRVGQQITRGSVNPHDLLR 1095
Query: 1024 ITEVSGTV 1031
+T+ + T+
Sbjct: 1096 LTDPNTTL 1103