RPSBLAST alignment for GI: 254780142 and conserved domain: COG0086

>gnl|CDD|30435 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]. Length = 808
 Score =  801 bits (2069), Expect = 0.0
 Identities = 402/856 (46%), Positives = 502/856 (58%), Gaps = 78/856 (9%)

Query: 20  SVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRM 79
            ++  +ASP +I S   GE+KKPETINYRT KPER GLF  RIFGP KDYEC CGKYKR+
Sbjct: 6   DIKFGLASPEEIRS-WSGEVKKPETINYRT-KPERGGLFDERIFGPDKDYECTCGKYKRI 63

Query: 80  KYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVERV 139
              G                     HI+LA+PVAH WF KS+PS    LL M+ RD ERV
Sbjct: 64  CPGGF-------------------GHIELAAPVAHIWFFKSIPS----LLDMTCRDCERV 100

Query: 140 LYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQNL 199
           LYFE+YVV+    + LEK Q+L E EYV        D F A  GA+AI  LL   DL   
Sbjct: 101 LYFEAYVVLG---TDLEKIQLLNETEYVY-------DSFCAHCGAEAIKILLEKPDL--- 147

Query: 200 ALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDF 259
             T R++ + S +  + KK++KRLK+VD+F+ SGN P WMI+  LPV PPDLRP + LD 
Sbjct: 148 -ETEREEETLSPT--KVKKLLKRLKVVDAFLLSGNRPEWMILTVLPVPPPDLRPSIQLDG 204

Query: 260 GRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVT 319
           GRFA SDLNDLYRRVI RNNRL RL  L AP II+RNEKRMLQE+VDALFDN R  R VT
Sbjct: 205 GRFAESDLNDLYRRVINRNNRLKRLLELAAP-IIVRNEKRMLQEAVDALFDNRR-PRAVT 262

Query: 320 GANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELF 379
           G   RPLKSLS  LKGKQGRFR NLLGKRVDYSGRSVI  GP L+L+QCG+PK MALELF
Sbjct: 263 GG--RPLKSLSQRLKGKQGRFRQNLLGKRVDYSGRSVISVGPNLKLNQCGVPKKMALELF 320

Query: 380 KPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLS-MQA 438
           KPF+  +L  +G  +  K AK+ VE+  PEVWDVL EV+    VLLNRAP+LHRLS MQA
Sbjct: 321 KPFVVTELNIEGLRTGAKYAKRMVERRLPEVWDVLREVIDGDPVLLNRAPTLHRLSIMQA 380

Query: 439 FEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASG 498
           FEP +  GKAI+LHPLVC  YNADFDGD+MAV+   S EA  EAR LM +  N+L P  G
Sbjct: 381 FEPVLPEGKAIRLHPLVCEAYNADFDGDEMAVHVPASGEAAAEARGLMGTQMNILTPHYG 440

Query: 499 APVTVPSQDMVLGLCYLSTVH----EGDPGEGML---FADMGEVYHALENKIVTLHSKIR 551
            P+  P QD V G   L+ V         GE  L   +AD  E   A+  KI     K+ 
Sbjct: 441 GPIVAPIQDTVGGPYLLTIVDAKLPSTPVGEIYLKDEYADDREKAEAIAKKIELTTGKVI 500

Query: 552 GRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRH 611
               S D    +   I  TT GR I    LP   ++   I N ++IK  I   + TIYR 
Sbjct: 501 VSTISPD---LAELSIIVTTDGRRIFNRGLPEDKDVLVKIVNGKLIKGVIDKKIVTIYRE 557

Query: 612 CGQ----KSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQ 667
            G     K+ V   D L  LG +     GI  G+ DI   + K++I+ EA+  V +   Q
Sbjct: 558 YGPEVASKALVKLLDKLKNLGIKGIGGFGIGIGRKDIEAEDEKDEIVIEAEGSVLKLILQ 617

Query: 668 YNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGA 727
           Y +G +TR E+ N V  +     + +   ++  IK    +    +      I  M  SGA
Sbjct: 618 YEEGDLTRTERNNIVEIIEVLGIEALRNAIIEEIKITLEE----QGLDFVDIRHMGLSGA 673

Query: 728 RGSIHQMRQLGGMRGLIAKPSGE-------------IIESPIRSHFKGGLCGFEFFQSCV 774
           R +I Q+ QL G +G++ +                   E P  S F  GL   E+F   +
Sbjct: 674 RMNISQIVQLIGQQGVMGEKISVLARAAFEVTVKHLEAEGPGESSFLEGLTENEYFGHPI 733

Query: 775 GGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGS 834
           GGR GL+D  ++TA SGYL+RRLVDVAQ+ +V + DC T  G+ +    + G+    L  
Sbjct: 734 GGRTGLVDTALKTADSGYLTRRLVDVAQDLIVQEDDCVT-DGIGVVIQFEYGEDGEDLTE 792

Query: 835 RVLGRTALDDIINPLT 850
           R+LGR   +D++ P+T
Sbjct: 793 RILGRVLEEDVLRPVT 808