RPSBLAST alignment for GI: 254780142 and conserved domain: COG0086
>gnl|CDD|30435 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]. Length = 808
Score = 801 bits (2069), Expect = 0.0
Identities = 402/856 (46%), Positives = 502/856 (58%), Gaps = 78/856 (9%)
Query: 20 SVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKYKRM 79
++ +ASP +I S GE+KKPETINYRT KPER GLF RIFGP KDYEC CGKYKR+
Sbjct: 6 DIKFGLASPEEIRS-WSGEVKKPETINYRT-KPERGGLFDERIFGPDKDYECTCGKYKRI 63
Query: 80 KYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTLLGMSLRDVERV 139
G HI+LA+PVAH WF KS+PS LL M+ RD ERV
Sbjct: 64 CPGGF-------------------GHIELAAPVAHIWFFKSIPS----LLDMTCRDCERV 100
Query: 140 LYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELLIALDLQNL 199
LYFE+YVV+ + LEK Q+L E EYV D F A GA+AI LL DL
Sbjct: 101 LYFEAYVVLG---TDLEKIQLLNETEYVY-------DSFCAHCGAEAIKILLEKPDL--- 147
Query: 200 ALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMIIRKLPVLPPDLRPLVALDF 259
T R++ + S + + KK++KRLK+VD+F+ SGN P WMI+ LPV PPDLRP + LD
Sbjct: 148 -ETEREEETLSPT--KVKKLLKRLKVVDAFLLSGNRPEWMILTVLPVPPPDLRPSIQLDG 204
Query: 260 GRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQESVDALFDNGRHKRVVT 319
GRFA SDLNDLYRRVI RNNRL RL L AP II+RNEKRMLQE+VDALFDN R R VT
Sbjct: 205 GRFAESDLNDLYRRVINRNNRLKRLLELAAP-IIVRNEKRMLQEAVDALFDNRR-PRAVT 262
Query: 320 GANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPELQLHQCGLPKLMALELF 379
G RPLKSLS LKGKQGRFR NLLGKRVDYSGRSVI GP L+L+QCG+PK MALELF
Sbjct: 263 GG--RPLKSLSQRLKGKQGRFRQNLLGKRVDYSGRSVISVGPNLKLNQCGVPKKMALELF 320
Query: 380 KPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQHVVLLNRAPSLHRLS-MQA 438
KPF+ +L +G + K AK+ VE+ PEVWDVL EV+ VLLNRAP+LHRLS MQA
Sbjct: 321 KPFVVTELNIEGLRTGAKYAKRMVERRLPEVWDVLREVIDGDPVLLNRAPTLHRLSIMQA 380
Query: 439 FEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASG 498
FEP + GKAI+LHPLVC YNADFDGD+MAV+ S EA EAR LM + N+L P G
Sbjct: 381 FEPVLPEGKAIRLHPLVCEAYNADFDGDEMAVHVPASGEAAAEARGLMGTQMNILTPHYG 440
Query: 499 APVTVPSQDMVLGLCYLSTVH----EGDPGEGML---FADMGEVYHALENKIVTLHSKIR 551
P+ P QD V G L+ V GE L +AD E A+ KI K+
Sbjct: 441 GPIVAPIQDTVGGPYLLTIVDAKLPSTPVGEIYLKDEYADDREKAEAIAKKIELTTGKVI 500
Query: 552 GRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKNISAMVDTIYRH 611
S D + I TT GR I LP ++ I N ++IK I + TIYR
Sbjct: 501 VSTISPD---LAELSIIVTTDGRRIFNRGLPEDKDVLVKIVNGKLIKGVIDKKIVTIYRE 557
Query: 612 CGQ----KSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQ 667
G K+ V D L LG + GI G+ DI + K++I+ EA+ V + Q
Sbjct: 558 YGPEVASKALVKLLDKLKNLGIKGIGGFGIGIGRKDIEAEDEKDEIVIEAEGSVLKLILQ 617
Query: 668 YNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIFMMSHSGA 727
Y +G +TR E+ N V + + + ++ IK + + I M SGA
Sbjct: 618 YEEGDLTRTERNNIVEIIEVLGIEALRNAIIEEIKITLEE----QGLDFVDIRHMGLSGA 673
Query: 728 RGSIHQMRQLGGMRGLIAKPSGE-------------IIESPIRSHFKGGLCGFEFFQSCV 774
R +I Q+ QL G +G++ + E P S F GL E+F +
Sbjct: 674 RMNISQIVQLIGQQGVMGEKISVLARAAFEVTVKHLEAEGPGESSFLEGLTENEYFGHPI 733
Query: 775 GGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGS 834
GGR GL+D ++TA SGYL+RRLVDVAQ+ +V + DC T G+ + + G+ L
Sbjct: 734 GGRTGLVDTALKTADSGYLTRRLVDVAQDLIVQEDDCVT-DGIGVVIQFEYGEDGEDLTE 792
Query: 835 RVLGRTALDDIINPLT 850
R+LGR +D++ P+T
Sbjct: 793 RILGRVLEEDVLRPVT 808