RPSBLAST alignment for GI: 254780142 and conserved domain: KOG0260
>gnl|CDD|35481 KOG0260, KOG0260, KOG0260, RNA polymerase II, large subunit [Transcription]. Length = 1605
Score = 209 bits (534), Expect = 3e-54
Identities = 201/876 (22%), Positives = 328/876 (37%), Gaps = 121/876 (13%)
Query: 16 RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGK 75
R SV+ I SP +I +S EI+ PET +P+ GL R+ G
Sbjct: 13 RTVKSVQFGILSPDEIRRMSVAEIEFPET--MEGGRPKLGGLMDPRL-----------GT 59
Query: 76 YKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTL----LGM 131
R +C+ CG + HI+LA PV HP FLK + + + +
Sbjct: 60 IDRD----SLCQTCGGNMF---ECPGHFGHIELAKPVFHPGFLKKVKKILRCVCFYCSKI 112
Query: 132 SLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELL 191
L + + E D + G
Sbjct: 113 LKDKFNPKEDQILRKRYCSKGRLLMVLDVCKGKVVCEGGIDVESDGR-SGCGLKQPSIRR 171
Query: 192 IALDLQN-LALTLRDQLSKSSSIFRR--KKIIKRLKIVDSFITSGN----NPGWMIIRKL 244
+ LDL D + +I KR+ D P WMI+ L
Sbjct: 172 LGLDLWAFWKQGDEDSQESKRKLSAERVLEIFKRISDEDIDQLGFKPKIARPEWMILTVL 231
Query: 245 PVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQES 304
PV PP +RP + + DL +I +N L R + AP II +++LQ
Sbjct: 232 PVPPPAVRPEIVMQGSARGEDDLTHKLADIIKKNIGLKRNEENGAPAHIIEEYEQLLQFH 291
Query: 305 VDALFDNG-RHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPEL 363
V DN + + RPLKS+S LKGK+GR R NL+GKRVD+S R+VI P L
Sbjct: 292 VATYVDNDIPGQPQADQKSGRPLKSISARLKGKEGRIRGNLMGKRVDFSARTVITGDPNL 351
Query: 364 QLHQCGLPKLMAL-----ELFKPFLYAQLEK-----------KGYVSTVKQAKKFVEKER 407
L + G+P+ +A E PF +L++ Y+ + +
Sbjct: 352 SLDEVGVPRSIAKRLTFPEHVTPFNIDRLQELVRRGLLEHPGAKYI-IRDNGDRIDLRYH 410
Query: 408 PEVWDV---LAEVVHQH-----VVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGY 459
D+ V +H VVL NR PSLH++SM A +++ +L+ V + Y
Sbjct: 411 KRAGDIHLQPGYKVERHLMDGDVVLFNRQPSLHKMSMMAHRVRVLPYSTFRLNLSVTSPY 470
Query: 460 NADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVH 519
NADFDGD+M ++ S E + E L + ++ P S PV QD + T
Sbjct: 471 NADFDGDEMNLHVPQSLETKAELEELAMVPKQIISPQSNKPVMGIVQDTLTA-VRKMTKR 529
Query: 520 EG--DPGEGMLFADMGEVYHA-------------------LENKIVTLHSKIRGRYKSVD 558
+ + + M + + + I+ + +
Sbjct: 530 DVFLNRAQVMNLLMYVPDWDGPPPAKPAILKPKPLWTGKQIFSLIIPGGINYIRDHSTHP 589
Query: 559 KDGNSISKIYDTTPGRMII--GEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKS 616
+ + DT R++I GE+ + +C + + + +V I+ G K
Sbjct: 590 DSEDELISPGDT---RVLIEGGEL------LIGVLCKKTV-GSSAGGLVHVIFLEKGPKI 639
Query: 617 TVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRG 676
F D + L + G S G D I + +I + + + + R
Sbjct: 640 ARGFFDSIQTLINSWLLREGFSIGIGDTIADAATMCVIQNT--IKEAKRDVLA---VIRE 694
Query: 677 EKYNKVVDLWGKTTDKVTEEMMARI-KRVEFDPETGRQK---KMNSIFMMSHSGARGSIH 732
+ N++ G+T + E + R+ + QK + N+ M +G++GS
Sbjct: 695 AQNNELEPTPGRTLRETFENKVNRVLNDARDKSGSSAQKSLSESNNFKTMVVAGSKGSFI 754
Query: 733 QMRQLG---------GMR---GLIAKPSGEIIESP--------IRSHFKGGLCGFEFFQS 772
+ Q+ G R G + + + + + GL EFF
Sbjct: 755 NISQVSACVGQQNVEGKRIPFGFPKRTLPHFSKDDYSPESRGFVENSYLTGLTPQEFFFH 814
Query: 773 CVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQ 808
+GGR+GL+D ++TA +GY+ RRL+ ++ +V
Sbjct: 815 AMGGREGLIDTAVKTAETGYIQRRLMKAMEDIMVAY 850