RPSBLAST alignment for GI: 254780142 and conserved domain: KOG0260

>gnl|CDD|35481 KOG0260, KOG0260, KOG0260, RNA polymerase II, large subunit [Transcription]. Length = 1605
 Score =  209 bits (534), Expect = 3e-54
 Identities = 201/876 (22%), Positives = 328/876 (37%), Gaps = 121/876 (13%)

Query: 16  RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGK 75
           R   SV+  I SP +I  +S  EI+ PET      +P+  GL   R+           G 
Sbjct: 13  RTVKSVQFGILSPDEIRRMSVAEIEFPET--MEGGRPKLGGLMDPRL-----------GT 59

Query: 76  YKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKSLPSRISTL----LGM 131
             R      +C+ CG  +           HI+LA PV HP FLK +   +  +      +
Sbjct: 60  IDRD----SLCQTCGGNMF---ECPGHFGHIELAKPVFHPGFLKKVKKILRCVCFYCSKI 112

Query: 132 SLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIAMMGADAIYELL 191
                                  L    +   +   E       D   +  G        
Sbjct: 113 LKDKFNPKEDQILRKRYCSKGRLLMVLDVCKGKVVCEGGIDVESDGR-SGCGLKQPSIRR 171

Query: 192 IALDLQN-LALTLRDQLSKSSSIFRR--KKIIKRLKIVDSFITSGN----NPGWMIIRKL 244
           + LDL         D       +      +I KR+   D            P WMI+  L
Sbjct: 172 LGLDLWAFWKQGDEDSQESKRKLSAERVLEIFKRISDEDIDQLGFKPKIARPEWMILTVL 231

Query: 245 PVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRMLQES 304
           PV PP +RP + +        DL      +I +N  L R +   AP  II   +++LQ  
Sbjct: 232 PVPPPAVRPEIVMQGSARGEDDLTHKLADIIKKNIGLKRNEENGAPAHIIEEYEQLLQFH 291

Query: 305 VDALFDNG-RHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAGPEL 363
           V    DN    +      + RPLKS+S  LKGK+GR R NL+GKRVD+S R+VI   P L
Sbjct: 292 VATYVDNDIPGQPQADQKSGRPLKSISARLKGKEGRIRGNLMGKRVDFSARTVITGDPNL 351

Query: 364 QLHQCGLPKLMAL-----ELFKPFLYAQLEK-----------KGYVSTVKQAKKFVEKER 407
            L + G+P+ +A      E   PF   +L++             Y+       +   +  
Sbjct: 352 SLDEVGVPRSIAKRLTFPEHVTPFNIDRLQELVRRGLLEHPGAKYI-IRDNGDRIDLRYH 410

Query: 408 PEVWDV---LAEVVHQH-----VVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGY 459
               D+       V +H     VVL NR PSLH++SM A   +++     +L+  V + Y
Sbjct: 411 KRAGDIHLQPGYKVERHLMDGDVVLFNRQPSLHKMSMMAHRVRVLPYSTFRLNLSVTSPY 470

Query: 460 NADFDGDQMAVYAVISPEAQLEARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVH 519
           NADFDGD+M ++   S E + E   L +    ++ P S  PV    QD +       T  
Sbjct: 471 NADFDGDEMNLHVPQSLETKAELEELAMVPKQIISPQSNKPVMGIVQDTLTA-VRKMTKR 529

Query: 520 EG--DPGEGMLFADMGEVYHA-------------------LENKIVTLHSKIRGRYKSVD 558
           +   +  + M        +                     + + I+         + +  
Sbjct: 530 DVFLNRAQVMNLLMYVPDWDGPPPAKPAILKPKPLWTGKQIFSLIIPGGINYIRDHSTHP 589

Query: 559 KDGNSISKIYDTTPGRMII--GEILPRHHEISFDICNQEMIKKNISAMVDTIYRHCGQKS 616
              + +    DT   R++I  GE+      +   +C + +   +   +V  I+   G K 
Sbjct: 590 DSEDELISPGDT---RVLIEGGEL------LIGVLCKKTV-GSSAGGLVHVIFLEKGPKI 639

Query: 617 TVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKMVKEYENQYNDGLITRG 676
              F D +  L   +    G S G  D I   +   +I     + +   +      + R 
Sbjct: 640 ARGFFDSIQTLINSWLLREGFSIGIGDTIADAATMCVIQNT--IKEAKRDVLA---VIRE 694

Query: 677 EKYNKVVDLWGKTTDKVTEEMMARI-KRVEFDPETGRQK---KMNSIFMMSHSGARGSIH 732
            + N++    G+T  +  E  + R+         +  QK   + N+   M  +G++GS  
Sbjct: 695 AQNNELEPTPGRTLRETFENKVNRVLNDARDKSGSSAQKSLSESNNFKTMVVAGSKGSFI 754

Query: 733 QMRQLG---------GMR---GLIAKPSGEIIESP--------IRSHFKGGLCGFEFFQS 772
            + Q+          G R   G   +      +          + + +  GL   EFF  
Sbjct: 755 NISQVSACVGQQNVEGKRIPFGFPKRTLPHFSKDDYSPESRGFVENSYLTGLTPQEFFFH 814

Query: 773 CVGGRKGLLDVVMRTASSGYLSRRLVDVAQNCVVNQ 808
            +GGR+GL+D  ++TA +GY+ RRL+   ++ +V  
Sbjct: 815 AMGGREGLIDTAVKTAETGYIQRRLMKAMEDIMVAY 850